Wall clock time and date at job start Tue Mar 31 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47300 * 2 1 4 4 N 1.46499 * 109.47221 * 120.00372 * 2 1 3 5 5 C 1.34780 * 119.99773 * 275.00031 * 4 2 1 6 6 O 1.21616 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.47380 * 119.99623 * 180.02562 * 5 4 2 8 8 C 1.47027 * 127.19016 * 179.97438 * 7 5 4 9 9 C 1.34175 * 105.95370 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12443 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.91105 * 359.76407 * 10 9 8 12 12 C 1.50699 * 109.46965 * 240.00249 * 2 1 3 13 13 O 1.21283 * 119.99843 * 240.00210 * 12 2 1 14 14 N 1.34776 * 120.00475 * 59.99867 * 12 2 1 15 15 C 1.46509 * 119.99370 * 0.02562 * 14 12 2 16 16 C 1.46497 * 120.00710 * 180.02562 * 14 12 2 17 17 H 1.09002 * 109.46725 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47188 * 240.00300 * 16 14 12 19 19 C 1.50697 * 109.47081 * 119.99864 * 16 14 12 20 20 H 1.07999 * 120.00055 * 0.02562 * 19 16 14 21 21 C 1.37878 * 119.99687 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00458 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 119.99926 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.46980 * 89.99582 * 23 21 19 25 25 H 1.48493 * 109.47135 * 209.99651 * 23 21 19 26 26 H 1.48498 * 109.47274 * 330.00048 * 23 21 19 27 27 H 1.08995 * 109.46890 * 59.99793 * 1 2 3 28 28 H 1.09000 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46855 * 299.99985 * 1 2 3 30 30 H 0.97002 * 120.00493 * 94.99643 * 4 2 1 31 31 H 1.07998 * 127.01989 * 359.94043 * 8 7 5 32 32 H 1.07998 * 125.43519 * 180.02562 * 9 8 7 33 33 H 1.08001 * 125.80126 * 180.26301 * 11 10 9 34 34 H 1.09003 * 109.46975 * 269.99637 * 15 14 12 35 35 H 1.08995 * 109.47277 * 29.99688 * 15 14 12 36 36 H 1.09003 * 109.46743 * 150.00175 * 15 14 12 37 37 H 1.09002 * 109.47153 * 299.99573 * 18 16 14 38 38 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 39 39 H 1.09004 * 109.47261 * 59.99745 * 18 16 14 40 40 H 0.96999 * 120.00480 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1618 2.4117 7 6 2.6389 -0.7131 3.5603 8 6 2.8395 -0.1385 4.8987 9 6 3.2962 -1.1404 5.6655 10 8 3.3887 -2.2549 4.9235 11 6 2.9969 -2.0251 3.6665 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 0.8649 0.9416 -2.5889 16 6 2.1945 -0.9408 -3.6508 17 1 2.7994 -1.7976 -3.3542 18 6 3.0448 0.0205 -4.4838 19 6 1.0221 -1.4140 -4.4708 20 1 0.0144 -1.2192 -4.1348 21 6 1.2359 -2.0956 -5.6501 22 7 2.4630 -2.3323 -6.0596 23 14 -0.2174 -2.6815 -6.6670 24 1 -0.6012 -1.6244 -7.6368 25 1 0.1586 -3.9154 -7.4027 26 1 -1.3649 -2.9704 -5.7699 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2491 -1.6319 1.1526 31 1 2.6571 0.8817 5.2024 32 1 3.5481 -1.0626 6.7128 33 1 2.9707 -2.7537 2.8697 34 1 -0.1832 0.6441 -2.6221 35 1 1.0288 1.6003 -1.7361 36 1 1.1227 1.4668 -3.5086 37 1 2.4395 0.8771 -4.7805 38 1 3.4081 -0.4937 -5.3736 39 1 3.8929 0.3627 -3.8907 40 1 2.6135 -2.8122 -6.8891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:59 Heat of formation + Delta-G solvation = -69.937083 kcal Electronic energy + Delta-G solvation = -23667.443069 eV Core-core repulsion = 20062.683925 eV Total energy + Delta-G solvation = -3604.759144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48532 -41.47129 -40.09311 -37.30145 -36.15669 -34.88095 -33.94910 -32.43745 -30.98382 -30.06258 -27.87370 -27.30212 -25.90305 -24.51581 -22.58334 -22.34878 -21.18984 -20.39787 -19.40009 -18.49654 -17.96846 -17.47093 -17.16078 -17.00702 -16.68115 -16.29137 -16.03119 -15.74201 -15.45101 -14.81584 -14.67959 -14.47200 -14.22743 -13.83882 -13.60464 -13.49874 -13.34990 -13.26901 -12.99517 -12.81134 -12.79064 -12.63014 -12.36275 -12.17610 -12.11385 -11.29029 -11.14993 -10.87870 -10.74900 -10.50742 -10.27554 -9.75245 -9.39081 -8.13991 -6.30232 0.31394 1.13438 1.43029 1.44310 1.53608 1.62370 1.77449 2.06981 2.26271 2.37025 2.51495 3.14565 3.43762 3.61804 3.77233 3.97327 4.05361 4.13152 4.36772 4.53440 4.62268 4.65436 4.74928 4.77574 4.79751 4.88232 4.96708 4.99321 5.04976 5.18325 5.23398 5.34811 5.46105 5.58170 5.66166 5.98039 6.00882 6.15382 6.39932 6.71350 6.76878 7.06087 7.21130 7.42902 8.90403 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.003292 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.831800 B = 8502.480430 C = 8775.832137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.114 0.886 4 N -0.704 5.704 5 C 0.591 3.409 6 O -0.575 6.575 7 C -0.268 4.268 8 C -0.193 4.193 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.040 3.960 12 C 0.496 3.504 13 O -0.591 6.591 14 N -0.590 5.590 15 C 0.073 3.927 16 C 0.263 3.737 17 H 0.014 0.986 18 C -0.136 4.136 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.016 3.984 22 N -0.918 5.918 23 Si 0.964 3.036 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.269 1.269 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.411 0.589 31 H 0.161 0.839 32 H 0.251 0.749 33 H 0.235 0.765 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.019 0.981 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 4.097 18.927 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.132 0.868 4 N -0.356 5.356 5 C 0.381 3.619 6 O -0.456 6.456 7 C -0.273 4.273 8 C -0.212 4.212 9 C -0.088 4.088 10 O -0.071 6.071 11 C -0.031 4.031 12 C 0.283 3.717 13 O -0.473 6.473 14 N -0.319 5.319 15 C -0.068 4.068 16 C 0.161 3.839 17 H 0.032 0.968 18 C -0.194 4.194 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.184 4.184 22 N -0.557 5.557 23 Si 0.789 3.211 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.194 1.194 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.249 0.751 31 H 0.178 0.822 32 H 0.267 0.733 33 H 0.251 0.749 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.893 4.086 18.937 19.465 hybrid contribution -0.331 -0.627 -1.118 1.324 sum -2.224 3.459 17.819 18.287 Atomic orbital electron populations 1.22316 0.91178 1.03515 1.04899 1.20709 0.96922 0.97243 0.82263 0.86848 1.45620 1.66944 1.14869 1.08192 1.17556 0.76355 0.85724 0.82303 1.90735 1.52548 1.16748 1.85578 1.21504 1.14291 0.95811 0.95665 1.22961 1.05596 1.01861 0.90804 1.24696 1.03155 0.82027 0.98881 1.83846 1.65936 1.37376 1.19916 1.24952 0.95829 0.96383 0.85912 1.20967 0.80415 0.84650 0.85632 1.90604 1.41062 1.28739 1.86858 1.48126 1.49270 1.28896 1.05653 1.22084 0.94863 0.86295 1.03605 1.18581 0.93696 0.90666 0.80942 0.96808 1.21917 0.97581 0.98939 1.01010 1.21565 0.93036 1.36649 1.06245 0.91809 1.25710 0.98368 0.95715 0.98577 1.70015 1.21237 1.41316 1.23094 0.85468 0.79270 0.77754 0.78591 1.19492 1.21350 1.19378 0.88376 0.92197 0.90553 0.75127 0.82175 0.73292 0.74879 0.91218 0.89191 0.90685 0.93209 0.91258 0.96202 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.12 71.98 0.66 -3.47 16 2 C 0.14 4.17 2.18 44.25 0.10 4.27 16 3 H 0.11 3.40 6.83 -2.39 -0.02 3.39 16 4 N -0.70 -20.21 4.94 -449.41 -2.22 -22.43 16 5 C 0.59 17.37 7.78 86.65 0.67 18.04 16 6 O -0.58 -20.16 16.65 -4.08 -0.07 -20.23 16 7 C -0.27 -6.38 6.31 -18.99 -0.12 -6.50 16 8 C -0.19 -3.81 11.01 23.65 0.26 -3.55 16 9 C -0.02 -0.30 12.03 66.89 0.80 0.50 16 10 O -0.18 -2.95 10.52 4.54 0.05 -2.90 16 11 C 0.04 0.73 11.61 67.39 0.78 1.51 16 12 C 0.50 19.57 7.14 87.66 0.63 20.20 16 13 O -0.59 -27.65 15.17 -3.04 -0.05 -27.69 16 14 N -0.59 -23.89 2.75 -826.79 -2.28 -26.16 16 15 C 0.07 2.22 8.04 127.77 1.03 3.25 16 16 C 0.26 13.23 2.63 44.24 0.12 13.35 16 17 H 0.01 0.84 6.90 -2.39 -0.02 0.82 16 18 C -0.14 -6.42 8.95 71.98 0.64 -5.78 16 19 C -0.54 -28.16 8.37 25.60 0.21 -27.95 16 20 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 21 C 0.02 0.85 5.30 84.66 0.45 1.30 16 22 N -0.92 -51.83 11.32 21.45 0.24 -51.59 16 23 Si 0.96 42.01 29.54 68.60 2.03 44.04 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H 0.10 2.26 4.53 -2.39 -0.01 2.25 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.41 11.09 6.76 -92.71 -0.63 10.46 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.24 2.98 7.47 -2.91 -0.02 2.96 16 34 H 0.07 1.94 6.95 -2.39 -0.02 1.92 16 35 H 0.09 2.12 6.01 -2.39 -0.01 2.11 16 36 H 0.07 2.29 6.43 -2.39 -0.02 2.27 16 37 H 0.05 2.12 6.66 -2.39 -0.02 2.10 16 38 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -72.63 333.81 4.39 -68.23 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.45 Total: 23.55 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.23 Total: 15.18 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -4.25 Total: -100.18 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.07 Total: -50.83 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -72.63 4.39 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.702 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds