Wall clock time and date at job start Tue Mar 31 2020 07:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47399 * 240.00110 * 2 1 3 5 5 C 1.34769 * 120.00003 * 85.00006 * 4 2 1 6 6 O 1.21614 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.47378 * 120.00151 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19340 * 179.97438 * 7 5 4 9 9 C 1.34184 * 105.95357 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12515 * 0.02562 * 9 8 7 11 11 C 1.33658 * 110.90640 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46991 * 120.00279 * 2 1 3 13 13 O 1.21276 * 120.00291 * 119.99800 * 12 2 1 14 14 N 1.34778 * 119.99701 * 299.99988 * 12 2 1 15 15 C 1.46496 * 120.00145 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99899 * 180.02562 * 14 12 2 17 17 H 1.09006 * 109.47064 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.47357 * 119.99766 * 16 14 12 19 19 C 1.50701 * 109.46969 * 239.99963 * 16 14 12 20 20 H 1.07998 * 120.00225 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99834 * 179.97438 * 19 16 14 22 22 N 1.31521 * 120.00382 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00086 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47390 * 119.99924 * 23 21 19 26 26 H 1.48503 * 109.47157 * 239.99814 * 23 21 19 27 27 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47193 * 299.99891 * 1 2 3 29 29 H 1.09009 * 109.46751 * 60.00065 * 1 2 3 30 30 H 0.97000 * 119.99846 * 265.00668 * 4 2 1 31 31 H 1.07999 * 127.02375 * 0.22997 * 8 7 5 32 32 H 1.07998 * 125.43737 * 180.02562 * 9 8 7 33 33 H 1.08002 * 125.79551 * 180.02562 * 11 10 9 34 34 H 1.09002 * 109.46887 * 90.00356 * 15 14 12 35 35 H 1.08998 * 109.47209 * 209.99672 * 15 14 12 36 36 H 1.09000 * 109.47225 * 330.00313 * 15 14 12 37 37 H 1.09000 * 109.47531 * 179.97438 * 18 16 14 38 38 H 1.08998 * 109.47108 * 300.00509 * 18 16 14 39 39 H 1.09009 * 109.46628 * 60.00014 * 18 16 14 40 40 H 0.96997 * 120.00514 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5606 8 6 2.8374 -0.1387 -4.8991 9 6 3.2945 -1.1405 -5.6660 10 8 3.3883 -2.2548 -4.9238 11 6 3.0022 -2.0235 -3.6652 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 0.8649 0.9414 2.5890 16 6 2.1953 -0.9403 3.6507 17 1 2.8009 -1.7968 3.3541 18 6 3.0451 0.0217 4.4834 19 6 1.0235 -1.4143 4.4712 20 1 0.0155 -1.2211 4.1351 21 6 1.2382 -2.0956 5.6505 22 7 2.4657 -2.3314 6.0597 23 14 -0.2143 -2.6837 6.6672 24 1 -1.4796 -2.2958 5.9935 25 1 -0.1586 -4.1617 6.8015 26 1 -0.1596 -2.0619 8.0147 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 2.2490 -1.6318 -1.1526 31 1 2.6572 0.8821 -5.2023 32 1 3.5466 -1.0626 -6.7132 33 1 2.9823 -2.7505 -2.8668 34 1 -0.1832 0.6439 2.6222 35 1 1.1226 1.4665 3.5087 36 1 1.0287 1.6002 1.7362 37 1 3.4084 -0.4918 5.3736 38 1 3.8926 0.3645 3.8899 39 1 2.4392 0.8779 4.7801 40 1 2.6168 -2.8110 6.8892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:02 Heat of formation + Delta-G solvation = -47.053197 kcal Electronic energy + Delta-G solvation = -23666.579293 eV Core-core repulsion = 20062.812469 eV Total energy + Delta-G solvation = -3603.766824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.72139 -40.07840 -38.72798 -35.60680 -34.80977 -33.24179 -32.88485 -31.13723 -29.77336 -28.73753 -26.45640 -25.29920 -24.69681 -23.27279 -21.67156 -20.96134 -20.09041 -19.10375 -18.20504 -16.81079 -16.50745 -16.33637 -16.12182 -15.60839 -15.21030 -14.94436 -14.76271 -14.49686 -14.03962 -13.53970 -13.31974 -13.11824 -12.98357 -12.63439 -12.57526 -12.13869 -12.04152 -11.65605 -11.45073 -11.26129 -11.11355 -10.80608 -10.76709 -10.29274 -10.22777 -10.06482 -10.00973 -9.30828 -9.21292 -9.04034 -8.90165 -8.48246 -7.70860 -6.12380 -4.20664 1.18615 1.88054 2.70855 3.01416 3.16868 3.22765 3.31034 3.32651 3.34702 3.89856 4.35262 4.41010 4.50154 4.83254 4.94833 5.18766 5.21102 5.27556 5.33884 5.45046 5.59623 5.70753 5.76890 5.88832 5.99074 6.06627 6.15940 6.33111 6.39278 6.71313 6.72898 6.76412 6.99030 7.31573 7.43109 7.52968 7.65624 7.94531 8.11766 8.19394 8.41433 8.72713 8.90070 9.46057 10.92963 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003292 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.971872 B = 8502.145126 C = 8775.884346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 H 0.110 0.890 4 N -0.705 5.705 5 C 0.589 3.411 6 O -0.542 6.542 7 C -0.234 4.234 8 C -0.165 4.165 9 C -0.044 4.044 10 O -0.175 6.175 11 C 0.026 3.974 12 C 0.502 3.498 13 O -0.552 6.552 14 N -0.584 5.584 15 C 0.079 3.921 16 C 0.258 3.742 17 H 0.064 0.936 18 C -0.148 4.148 19 C -0.526 4.526 20 H 0.060 0.940 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.407 0.593 31 H 0.159 0.841 32 H 0.208 0.792 33 H 0.214 0.786 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.012 0.988 39 H 0.031 0.969 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 3.748 -17.639 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.127 0.873 4 N -0.357 5.357 5 C 0.377 3.623 6 O -0.420 6.420 7 C -0.238 4.238 8 C -0.184 4.184 9 C -0.110 4.110 10 O -0.070 6.070 11 C -0.045 4.045 12 C 0.287 3.713 13 O -0.432 6.432 14 N -0.314 5.314 15 C -0.065 4.065 16 C 0.158 3.842 17 H 0.082 0.918 18 C -0.207 4.207 19 C -0.564 4.564 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.244 0.756 31 H 0.177 0.823 32 H 0.225 0.775 33 H 0.231 0.769 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.664 3.723 -17.633 18.034 hybrid contribution -0.758 -0.504 0.789 1.204 sum -1.422 3.219 -16.844 17.208 Atomic orbital electron populations 1.22355 0.93072 1.03409 1.03913 1.20815 0.95689 0.97851 0.83894 0.87282 1.45607 1.66953 1.14702 1.08478 1.17217 0.77179 0.86073 0.81839 1.90767 1.50847 1.15371 1.85031 1.21513 1.11935 0.94591 0.95793 1.22780 1.03700 1.00882 0.91051 1.23941 1.05826 0.83491 0.97773 1.83803 1.66481 1.36760 1.19914 1.24599 0.97662 0.96912 0.85308 1.20281 0.81209 0.85037 0.84775 1.90628 1.39434 1.26886 1.86213 1.48170 1.48714 1.27938 1.06572 1.21810 0.94985 0.87552 1.02109 1.19000 0.94342 0.91403 0.79478 0.91802 1.22109 0.97325 0.99016 1.02231 1.21336 0.92619 1.36508 1.05960 0.92133 1.24897 0.95946 0.95580 0.97371 1.69886 1.19248 1.40708 1.22714 0.86431 0.82434 0.78549 0.79917 1.19785 1.20920 1.20918 0.91846 0.89556 0.91450 0.75616 0.82311 0.77524 0.76944 0.92520 0.90583 0.92464 0.88686 0.96907 0.94960 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.12 37.15 0.34 -1.98 16 2 C 0.13 1.97 2.18 -69.08 -0.15 1.82 16 3 H 0.11 1.71 6.83 -51.93 -0.35 1.35 16 4 N -0.70 -10.26 4.94 -56.03 -0.28 -10.53 16 5 C 0.59 8.76 7.78 -12.54 -0.10 8.66 16 6 O -0.54 -9.55 16.65 5.27 0.09 -9.47 16 7 C -0.23 -2.87 6.31 -103.28 -0.65 -3.52 16 8 C -0.16 -1.73 11.01 -37.45 -0.41 -2.14 16 9 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 10 O -0.17 -1.67 10.52 7.66 0.08 -1.59 16 11 C 0.03 0.25 11.61 30.07 0.35 0.60 16 12 C 0.50 9.87 7.14 -10.98 -0.08 9.80 16 13 O -0.55 -12.57 15.16 5.56 0.08 -12.49 16 14 N -0.58 -11.90 2.75 -175.26 -0.48 -12.38 16 15 C 0.08 1.27 8.05 59.84 0.48 1.75 16 16 C 0.26 6.36 2.63 -69.08 -0.18 6.18 16 17 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 18 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 19 C -0.53 -13.77 8.37 -34.44 -0.29 -14.06 16 20 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 23 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.11 4.53 -51.93 -0.24 0.87 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.41 5.52 6.76 -40.82 -0.28 5.24 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.21 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.21 1.52 7.47 -52.49 -0.39 1.13 16 34 H 0.06 0.86 6.95 -51.93 -0.36 0.50 16 35 H 0.08 1.24 6.42 -51.93 -0.33 0.90 16 36 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.03 0.69 6.66 -51.92 -0.35 0.34 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -32.83 333.81 -4.91 -37.74 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.93 Total: 6.48 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.10 Total: 5.60 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.13 Total: -46.88 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.25 Total: -23.55 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.83 -4.91 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.315 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds