Wall clock time and date at job start Tue Mar 31 2020 07:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47399 * 240.00110 * 2 1 3 5 5 C 1.34769 * 120.00003 * 85.00006 * 4 2 1 6 6 O 1.21614 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.47378 * 120.00151 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19340 * 179.97438 * 7 5 4 9 9 C 1.34184 * 105.95357 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12515 * 0.02562 * 9 8 7 11 11 C 1.33658 * 110.90640 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46991 * 120.00279 * 2 1 3 13 13 O 1.21276 * 120.00291 * 119.99800 * 12 2 1 14 14 N 1.34778 * 119.99701 * 299.99988 * 12 2 1 15 15 C 1.46496 * 120.00145 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99899 * 180.02562 * 14 12 2 17 17 H 1.09006 * 109.47064 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.47357 * 119.99766 * 16 14 12 19 19 C 1.50701 * 109.46969 * 239.99963 * 16 14 12 20 20 H 1.07998 * 120.00225 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99834 * 179.97438 * 19 16 14 22 22 N 1.31521 * 120.00382 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00086 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47390 * 119.99924 * 23 21 19 26 26 H 1.48503 * 109.47157 * 239.99814 * 23 21 19 27 27 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47193 * 299.99891 * 1 2 3 29 29 H 1.09009 * 109.46751 * 60.00065 * 1 2 3 30 30 H 0.97000 * 119.99846 * 265.00668 * 4 2 1 31 31 H 1.07999 * 127.02375 * 0.22997 * 8 7 5 32 32 H 1.07998 * 125.43737 * 180.02562 * 9 8 7 33 33 H 1.08002 * 125.79551 * 180.02562 * 11 10 9 34 34 H 1.09002 * 109.46887 * 90.00356 * 15 14 12 35 35 H 1.08998 * 109.47209 * 209.99672 * 15 14 12 36 36 H 1.09000 * 109.47225 * 330.00313 * 15 14 12 37 37 H 1.09000 * 109.47531 * 179.97438 * 18 16 14 38 38 H 1.08998 * 109.47108 * 300.00509 * 18 16 14 39 39 H 1.09009 * 109.46628 * 60.00014 * 18 16 14 40 40 H 0.96997 * 120.00514 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5606 8 6 2.8374 -0.1387 -4.8991 9 6 3.2945 -1.1405 -5.6660 10 8 3.3883 -2.2548 -4.9238 11 6 3.0022 -2.0235 -3.6652 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 0.8649 0.9414 2.5890 16 6 2.1953 -0.9403 3.6507 17 1 2.8009 -1.7968 3.3541 18 6 3.0451 0.0217 4.4834 19 6 1.0235 -1.4143 4.4712 20 1 0.0155 -1.2211 4.1351 21 6 1.2382 -2.0956 5.6505 22 7 2.4657 -2.3314 6.0597 23 14 -0.2143 -2.6837 6.6672 24 1 -1.4796 -2.2958 5.9935 25 1 -0.1586 -4.1617 6.8015 26 1 -0.1596 -2.0619 8.0147 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 2.2490 -1.6318 -1.1526 31 1 2.6572 0.8821 -5.2023 32 1 3.5466 -1.0626 -6.7132 33 1 2.9823 -2.7505 -2.8668 34 1 -0.1832 0.6439 2.6222 35 1 1.1226 1.4665 3.5087 36 1 1.0287 1.6002 1.7362 37 1 3.4084 -0.4918 5.3736 38 1 3.8926 0.3645 3.8899 39 1 2.4392 0.8779 4.7801 40 1 2.6168 -2.8110 6.8892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:01 Heat of formation + Delta-G solvation = -69.973164 kcal Electronic energy + Delta-G solvation = -23667.573178 eV Core-core repulsion = 20062.812469 eV Total energy + Delta-G solvation = -3604.760709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48442 -41.47208 -40.09406 -37.30210 -36.15719 -34.88080 -33.94929 -32.43705 -30.98307 -30.06226 -27.87398 -27.30391 -25.90271 -24.51547 -22.58336 -22.34882 -21.19008 -20.39792 -19.40004 -18.49880 -17.96855 -17.47190 -17.15871 -17.00947 -16.68129 -16.29008 -16.03094 -15.74149 -15.44852 -14.81896 -14.67859 -14.47309 -14.22838 -13.83852 -13.60829 -13.49907 -13.35184 -13.26950 -12.98519 -12.82428 -12.79804 -12.63592 -12.36798 -12.15757 -12.09879 -11.28852 -11.14352 -10.87897 -10.75144 -10.51324 -10.27557 -9.75211 -9.39010 -8.14165 -6.30285 0.31414 1.13422 1.42192 1.44077 1.54571 1.62465 1.77481 2.06993 2.26261 2.37022 2.51461 3.14497 3.43775 3.61821 3.77262 3.97345 4.05410 4.13150 4.36770 4.53439 4.62285 4.65424 4.74936 4.77588 4.79747 4.88307 4.96748 4.99327 5.04996 5.18329 5.23420 5.34819 5.46140 5.58232 5.66318 5.98020 6.00850 6.15396 6.39971 6.71356 6.77080 7.06123 7.21145 7.42878 8.90430 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003292 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.971872 B = 8502.145126 C = 8775.884346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.114 0.886 4 N -0.704 5.704 5 C 0.591 3.409 6 O -0.575 6.575 7 C -0.268 4.268 8 C -0.193 4.193 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.040 3.960 12 C 0.496 3.504 13 O -0.591 6.591 14 N -0.590 5.590 15 C 0.074 3.926 16 C 0.262 3.738 17 H 0.014 0.986 18 C -0.136 4.136 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.015 3.985 22 N -0.918 5.918 23 Si 0.964 3.036 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.411 0.589 31 H 0.161 0.839 32 H 0.251 0.749 33 H 0.235 0.765 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.019 0.981 39 H 0.049 0.951 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 4.108 -18.946 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.132 0.868 4 N -0.356 5.356 5 C 0.381 3.619 6 O -0.456 6.456 7 C -0.273 4.273 8 C -0.212 4.212 9 C -0.088 4.088 10 O -0.071 6.071 11 C -0.031 4.031 12 C 0.283 3.717 13 O -0.473 6.473 14 N -0.319 5.319 15 C -0.068 4.068 16 C 0.161 3.839 17 H 0.032 0.968 18 C -0.194 4.194 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.184 4.184 22 N -0.557 5.557 23 Si 0.789 3.211 24 H -0.188 1.188 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.249 0.751 31 H 0.178 0.822 32 H 0.267 0.733 33 H 0.251 0.749 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.892 4.101 -18.957 19.488 hybrid contribution -0.320 -0.641 1.123 1.332 sum -2.212 3.460 -17.834 18.301 Atomic orbital electron populations 1.22316 0.91179 1.03521 1.04894 1.20710 0.96921 0.97244 0.82263 0.86849 1.45618 1.66937 1.14868 1.08197 1.17552 0.76361 0.85723 0.82302 1.90734 1.52544 1.16752 1.85582 1.21501 1.14243 0.95869 0.95649 1.22961 1.05578 1.01852 0.90830 1.24698 1.03142 0.82017 0.98904 1.83848 1.66098 1.37339 1.19790 1.24953 0.95854 0.96396 0.85879 1.20965 0.80412 0.84650 0.85629 1.90603 1.41058 1.28737 1.86854 1.48124 1.49254 1.28912 1.05653 1.22080 0.94852 0.86298 1.03607 1.18589 0.93702 0.90681 0.80953 0.96805 1.21916 0.97592 0.98937 1.01003 1.21594 0.93040 1.36549 1.06179 0.91803 1.25713 0.98363 0.95742 0.98593 1.70025 1.21178 1.41346 1.23131 0.85419 0.79567 0.77610 0.78480 1.18760 1.21245 1.20273 0.92186 0.88383 0.90557 0.75127 0.82175 0.73293 0.74882 0.91242 0.90679 0.89191 0.91262 0.96193 0.93200 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.12 71.98 0.66 -3.47 16 2 C 0.14 4.17 2.18 44.24 0.10 4.27 16 3 H 0.11 3.40 6.83 -2.39 -0.02 3.38 16 4 N -0.70 -20.19 4.94 -449.42 -2.22 -22.41 16 5 C 0.59 17.36 7.78 86.65 0.67 18.04 16 6 O -0.58 -20.16 16.65 -4.07 -0.07 -20.23 16 7 C -0.27 -6.38 6.31 -18.99 -0.12 -6.50 16 8 C -0.19 -3.81 11.01 23.65 0.26 -3.55 16 9 C -0.02 -0.30 12.03 66.89 0.80 0.50 16 10 O -0.18 -2.95 10.52 4.48 0.05 -2.90 16 11 C 0.04 0.73 11.61 67.39 0.78 1.51 16 12 C 0.50 19.56 7.14 87.66 0.63 20.19 16 13 O -0.59 -27.62 15.16 -3.02 -0.05 -27.67 16 14 N -0.59 -23.87 2.75 -826.80 -2.28 -26.15 16 15 C 0.07 2.22 8.05 127.77 1.03 3.25 16 16 C 0.26 13.20 2.63 44.25 0.12 13.32 16 17 H 0.01 0.84 6.90 -2.38 -0.02 0.82 16 18 C -0.14 -6.42 8.95 71.98 0.64 -5.77 16 19 C -0.54 -28.07 8.37 25.60 0.21 -27.86 16 20 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 21 C 0.02 0.82 5.30 84.65 0.45 1.27 16 22 N -0.92 -51.81 11.32 21.45 0.24 -51.57 16 23 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.10 2.26 4.53 -2.39 -0.01 2.25 16 29 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.41 11.08 6.76 -92.71 -0.63 10.45 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.24 2.98 7.47 -2.91 -0.02 2.96 16 34 H 0.07 1.94 6.95 -2.39 -0.02 1.92 16 35 H 0.07 2.29 6.42 -2.39 -0.02 2.28 16 36 H 0.09 2.12 6.01 -2.39 -0.01 2.11 16 37 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 2.12 6.66 -2.38 -0.02 2.10 16 40 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -72.62 333.81 4.39 -68.22 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.45 Total: 23.45 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 6.23 Total: 15.20 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.25 Total: -100.13 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.07 Total: -50.79 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.62 4.39 -68.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.750 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds