Wall clock time and date at job start Tue Mar 31 2020 07:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47212 * 2 1 4 4 N 1.46498 * 109.47211 * 240.00066 * 2 1 3 5 5 C 1.34776 * 119.99907 * 84.99576 * 4 2 1 6 6 O 1.21693 * 120.00442 * 0.02562 * 5 4 2 7 7 C 1.46659 * 119.99783 * 179.97438 * 5 4 2 8 8 C 1.36544 * 125.98558 * 179.71733 * 7 5 4 9 9 C 1.40373 * 106.70528 * 179.85770 * 8 7 5 10 10 C 1.35121 * 107.11235 * 0.40656 * 9 8 7 11 11 O 1.33928 * 108.77443 * 359.74659 * 10 9 8 12 12 C 1.50701 * 109.47328 * 119.99690 * 2 1 3 13 13 O 1.21286 * 119.99691 * 99.91696 * 12 2 1 14 14 N 1.34774 * 119.99941 * 279.92053 * 12 2 1 15 15 C 1.46504 * 119.99625 * 184.63704 * 14 12 2 16 16 C 1.46501 * 120.00431 * 4.62982 * 14 12 2 17 17 H 1.08998 * 109.46681 * 5.50693 * 16 14 12 18 18 C 1.52995 * 109.46791 * 125.50879 * 16 14 12 19 19 C 1.50701 * 109.47064 * 245.51040 * 16 14 12 20 20 H 1.07997 * 120.00463 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99617 * 179.97438 * 19 16 14 22 22 N 1.31520 * 119.99473 * 180.02562 * 21 19 16 23 23 Si 1.86797 * 120.00093 * 359.97438 * 21 19 16 24 24 H 1.48504 * 109.46881 * 90.00459 * 23 21 19 25 25 H 1.48507 * 109.47111 * 209.99946 * 23 21 19 26 26 H 1.48493 * 109.47332 * 329.99978 * 23 21 19 27 27 H 1.09002 * 109.46770 * 293.15894 * 1 2 3 28 28 H 1.09001 * 109.47107 * 53.15795 * 1 2 3 29 29 H 1.08993 * 109.46789 * 173.16309 * 1 2 3 30 30 H 0.97001 * 119.99860 * 264.99929 * 4 2 1 31 31 H 1.07995 * 126.64856 * 359.96202 * 8 7 5 32 32 H 1.07997 * 126.43817 * 180.15361 * 9 8 7 33 33 H 1.08005 * 125.61405 * 179.71168 * 10 9 8 34 34 H 1.09007 * 109.46779 * 273.66538 * 15 14 12 35 35 H 1.08990 * 109.47398 * 33.66469 * 15 14 12 36 36 H 1.09002 * 109.47370 * 153.67356 * 15 14 12 37 37 H 1.09005 * 109.46693 * 180.02562 * 18 16 14 38 38 H 1.09002 * 109.47346 * 60.00825 * 18 16 14 39 39 H 1.08991 * 109.47708 * 299.99877 * 18 16 14 40 40 H 0.97008 * 119.99401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6364 -0.7094 -3.5544 8 6 2.8080 -0.1519 -4.7890 9 6 3.2936 -1.1681 -5.6268 10 6 3.3873 -2.2893 -4.8786 11 8 2.9905 -2.0091 -3.6305 12 6 2.0324 -0.7103 1.2305 13 8 2.4051 -1.8621 1.1561 14 7 2.0675 -0.0658 2.4136 15 6 2.6496 -0.7208 3.5876 16 6 1.5236 1.2900 2.5256 17 1 1.0504 1.5705 1.5846 18 6 0.4872 1.3323 3.6503 19 6 2.6394 2.2549 2.8340 20 1 3.6522 1.8943 2.9367 21 6 2.3671 3.5980 2.9850 22 7 3.3410 4.4402 3.2537 23 14 0.6154 4.2218 2.8066 24 1 -0.0582 4.1906 4.1297 25 1 0.6360 5.6156 2.2944 26 1 -0.1240 3.3552 1.8541 27 1 -0.3633 0.4042 0.9449 28 1 -0.3633 0.6162 -0.8224 29 1 -0.3633 -1.0203 -0.1223 30 1 2.2491 -1.6317 -1.1526 31 1 2.6101 0.8729 -5.0666 32 1 3.5415 -1.0727 -6.6736 33 1 3.7259 -3.2531 -5.2294 34 1 1.8883 -1.3249 4.0814 35 1 3.4747 -1.3606 3.2749 36 1 3.0186 0.0357 4.2802 37 1 0.0823 2.3409 3.7333 38 1 0.9605 1.0519 4.5913 39 1 -0.3197 0.6345 3.4273 40 1 3.1494 5.3853 3.3595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:51 Heat of formation + Delta-G solvation = -42.017324 kcal Electronic energy + Delta-G solvation = -24159.886236 eV Core-core repulsion = 20556.337783 eV Total energy + Delta-G solvation = -3603.548453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.78571 -40.12473 -38.81254 -35.97989 -34.91779 -33.19403 -32.64330 -31.31621 -30.20891 -29.49926 -26.76226 -25.22523 -24.48909 -22.66676 -21.88241 -21.45029 -20.27087 -19.22334 -18.17120 -17.10448 -16.70441 -16.43852 -16.10921 -15.90594 -15.11894 -14.91487 -14.61208 -14.28932 -13.93865 -13.32860 -13.23409 -13.11401 -13.05563 -12.87339 -12.79699 -12.41190 -12.10329 -12.08883 -11.78233 -11.47112 -11.39606 -11.21457 -10.77214 -10.29234 -10.25009 -10.20849 -9.82992 -9.52972 -9.36896 -9.08254 -8.77874 -8.73696 -7.90689 -6.24985 -4.28514 0.98169 2.21737 2.55282 2.93550 3.14931 3.19656 3.21484 3.24540 3.29985 3.76750 4.23294 4.56996 4.75148 4.83219 4.93597 5.05081 5.30935 5.43549 5.49427 5.61192 5.73386 5.78074 5.90867 5.96908 6.01573 6.08479 6.15776 6.16924 6.25590 6.27423 6.37084 6.42649 6.58347 6.69651 6.78134 7.18362 7.44692 7.54486 7.93415 8.13935 8.37007 8.60185 8.79037 9.33705 10.87457 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.004510 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.069706 B = 6206.333919 C = 6921.448571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 H 0.126 0.874 4 N -0.699 5.699 5 C 0.602 3.398 6 O -0.515 6.515 7 C -0.070 4.070 8 C -0.123 4.123 9 C -0.226 4.226 10 C -0.010 4.010 11 O -0.162 6.162 12 C 0.512 3.488 13 O -0.566 6.566 14 N -0.577 5.577 15 C 0.094 3.906 16 C 0.219 3.781 17 H 0.055 0.945 18 C -0.164 4.164 19 C -0.538 4.538 20 H 0.082 0.918 21 C 0.079 3.921 22 N -0.887 5.887 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.263 1.263 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.412 0.588 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.209 0.791 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -11.623 -11.825 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.143 0.857 4 N -0.352 5.352 5 C 0.387 3.613 6 O -0.392 6.392 7 C -0.123 4.123 8 C -0.144 4.144 9 C -0.245 4.245 10 C -0.080 4.080 11 O -0.057 6.057 12 C 0.298 3.702 13 O -0.447 6.447 14 N -0.306 5.306 15 C -0.049 4.049 16 C 0.117 3.883 17 H 0.073 0.927 18 C -0.222 4.222 19 C -0.576 4.576 20 H 0.100 0.900 21 C -0.125 4.125 22 N -0.524 5.524 23 Si 0.711 3.289 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.188 1.188 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.250 0.750 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.226 0.774 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.891 -11.348 -11.524 16.635 hybrid contribution -0.631 0.215 -0.160 0.686 sum -4.522 -11.133 -11.684 16.760 Atomic orbital electron populations 1.22160 0.92865 1.02830 1.03933 1.20931 0.95779 0.98879 0.82975 0.85662 1.45679 1.66179 1.14921 1.08423 1.16520 0.77971 0.85726 0.81036 1.90919 1.50478 1.13925 1.83852 1.22122 1.10429 0.82528 0.97176 1.21987 0.99981 1.01313 0.91119 1.21852 1.07953 0.92930 1.01778 1.24401 1.01268 1.00902 0.81456 1.84100 1.63664 1.26553 1.31373 1.20276 0.78650 0.86370 0.84891 1.90605 1.50902 1.17333 1.85825 1.47845 1.57454 1.16999 1.08342 1.21494 0.97620 0.97691 0.88092 1.19580 0.93622 0.79024 0.96059 0.92742 1.22472 0.98484 1.00119 1.01076 1.21155 0.94728 0.91142 1.50574 0.90046 1.24892 0.97093 0.96549 0.93965 1.69871 1.31894 1.03561 1.47026 0.86950 0.85139 0.78221 0.78600 1.20232 1.21887 1.18837 0.90360 0.90864 0.91865 0.75035 0.82128 0.82644 0.77426 0.93744 0.91984 0.89822 0.92871 0.92031 0.94552 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.06 37.16 0.34 -2.15 16 2 C 0.12 2.20 2.11 -69.08 -0.15 2.06 16 3 H 0.13 2.57 6.41 -51.93 -0.33 2.23 16 4 N -0.70 -11.54 5.04 -56.25 -0.28 -11.83 16 5 C 0.60 10.11 7.75 -12.86 -0.10 10.01 16 6 O -0.51 -10.09 16.53 5.20 0.09 -10.00 16 7 C -0.07 -1.00 7.13 -36.80 -0.26 -1.26 16 8 C -0.12 -1.51 10.62 -39.39 -0.42 -1.93 16 9 C -0.23 -2.11 10.87 -39.89 -0.43 -2.54 16 10 C -0.01 -0.09 12.08 29.62 0.36 0.27 16 11 O -0.16 -1.99 10.40 4.99 0.05 -1.94 16 12 C 0.51 10.04 6.91 -10.99 -0.08 9.96 16 13 O -0.57 -11.69 15.61 5.55 0.09 -11.61 16 14 N -0.58 -11.56 2.75 -175.26 -0.48 -12.05 16 15 C 0.09 1.69 9.23 59.85 0.55 2.24 16 16 C 0.22 4.73 1.45 -69.08 -0.10 4.63 16 17 H 0.06 1.18 3.62 -51.93 -0.19 0.99 16 18 C -0.16 -3.19 8.59 37.16 0.32 -2.87 16 19 C -0.54 -13.99 8.65 -34.44 -0.30 -14.29 16 20 H 0.08 2.35 8.03 -52.49 -0.42 1.93 16 21 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 22 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 23 Si 0.88 20.33 24.37 -169.99 -4.14 16.19 16 24 H -0.28 -6.12 6.87 56.52 0.39 -5.73 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.26 -5.70 6.53 56.52 0.37 -5.33 16 27 H 0.08 1.22 6.65 -51.93 -0.35 0.87 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.41 6.42 7.49 -40.82 -0.31 6.11 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.21 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.06 1.10 7.61 -51.93 -0.39 0.71 16 36 H 0.08 1.53 7.35 -51.93 -0.38 1.15 16 37 H 0.05 1.08 3.28 -51.93 -0.17 0.91 16 38 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -31.49 331.99 -4.34 -35.83 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.07 Total: 9.22 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -0.36 Total: 6.17 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.01 Total: -48.86 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.22 Total: -23.55 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.14 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.49 -4.34 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.192 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds