Wall clock time and date at job start Tue Mar 31 2020 07:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47212 * 2 1 4 4 N 1.46498 * 109.47211 * 240.00066 * 2 1 3 5 5 C 1.34776 * 119.99907 * 84.99576 * 4 2 1 6 6 O 1.21693 * 120.00442 * 0.02562 * 5 4 2 7 7 C 1.46659 * 119.99783 * 179.97438 * 5 4 2 8 8 C 1.36544 * 125.98558 * 179.71733 * 7 5 4 9 9 C 1.40373 * 106.70528 * 179.85770 * 8 7 5 10 10 C 1.35121 * 107.11235 * 0.40656 * 9 8 7 11 11 O 1.33928 * 108.77443 * 359.74659 * 10 9 8 12 12 C 1.50701 * 109.47328 * 119.99690 * 2 1 3 13 13 O 1.21286 * 119.99691 * 99.91696 * 12 2 1 14 14 N 1.34774 * 119.99941 * 279.92053 * 12 2 1 15 15 C 1.46504 * 119.99625 * 184.63704 * 14 12 2 16 16 C 1.46501 * 120.00431 * 4.62982 * 14 12 2 17 17 H 1.08998 * 109.46681 * 5.50693 * 16 14 12 18 18 C 1.52995 * 109.46791 * 125.50879 * 16 14 12 19 19 C 1.50701 * 109.47064 * 245.51040 * 16 14 12 20 20 H 1.07997 * 120.00463 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99617 * 179.97438 * 19 16 14 22 22 N 1.31520 * 119.99473 * 180.02562 * 21 19 16 23 23 Si 1.86797 * 120.00093 * 359.97438 * 21 19 16 24 24 H 1.48504 * 109.46881 * 90.00459 * 23 21 19 25 25 H 1.48507 * 109.47111 * 209.99946 * 23 21 19 26 26 H 1.48493 * 109.47332 * 329.99978 * 23 21 19 27 27 H 1.09002 * 109.46770 * 293.15894 * 1 2 3 28 28 H 1.09001 * 109.47107 * 53.15795 * 1 2 3 29 29 H 1.08993 * 109.46789 * 173.16309 * 1 2 3 30 30 H 0.97001 * 119.99860 * 264.99929 * 4 2 1 31 31 H 1.07995 * 126.64856 * 359.96202 * 8 7 5 32 32 H 1.07997 * 126.43817 * 180.15361 * 9 8 7 33 33 H 1.08005 * 125.61405 * 179.71168 * 10 9 8 34 34 H 1.09007 * 109.46779 * 273.66538 * 15 14 12 35 35 H 1.08990 * 109.47398 * 33.66469 * 15 14 12 36 36 H 1.09002 * 109.47370 * 153.67356 * 15 14 12 37 37 H 1.09005 * 109.46693 * 180.02562 * 18 16 14 38 38 H 1.09002 * 109.47346 * 60.00825 * 18 16 14 39 39 H 1.08991 * 109.47708 * 299.99877 * 18 16 14 40 40 H 0.97008 * 119.99401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6364 -0.7094 -3.5544 8 6 2.8080 -0.1519 -4.7890 9 6 3.2936 -1.1681 -5.6268 10 6 3.3873 -2.2893 -4.8786 11 8 2.9905 -2.0091 -3.6305 12 6 2.0324 -0.7103 1.2305 13 8 2.4051 -1.8621 1.1561 14 7 2.0675 -0.0658 2.4136 15 6 2.6496 -0.7208 3.5876 16 6 1.5236 1.2900 2.5256 17 1 1.0504 1.5705 1.5846 18 6 0.4872 1.3323 3.6503 19 6 2.6394 2.2549 2.8340 20 1 3.6522 1.8943 2.9367 21 6 2.3671 3.5980 2.9850 22 7 3.3410 4.4402 3.2537 23 14 0.6154 4.2218 2.8066 24 1 -0.0582 4.1906 4.1297 25 1 0.6360 5.6156 2.2944 26 1 -0.1240 3.3552 1.8541 27 1 -0.3633 0.4042 0.9449 28 1 -0.3633 0.6162 -0.8224 29 1 -0.3633 -1.0203 -0.1223 30 1 2.2491 -1.6317 -1.1526 31 1 2.6101 0.8729 -5.0666 32 1 3.5415 -1.0727 -6.6736 33 1 3.7259 -3.2531 -5.2294 34 1 1.8883 -1.3249 4.0814 35 1 3.4747 -1.3606 3.2749 36 1 3.0186 0.0357 4.2802 37 1 0.0823 2.3409 3.7333 38 1 0.9605 1.0519 4.5913 39 1 -0.3197 0.6345 3.4273 40 1 3.1494 5.3853 3.3595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:50 Heat of formation + Delta-G solvation = -65.310933 kcal Electronic energy + Delta-G solvation = -24160.896322 eV Core-core repulsion = 20556.337783 eV Total energy + Delta-G solvation = -3604.558539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.66353 -41.59576 -40.23193 -37.64791 -36.30483 -34.61282 -34.06647 -32.57930 -31.94578 -30.49089 -28.22464 -27.12833 -25.72905 -23.97517 -23.09252 -22.67817 -21.44388 -20.50757 -19.52959 -18.97738 -18.04274 -17.69704 -17.38203 -17.14037 -16.71207 -16.34694 -16.12848 -15.71544 -15.28697 -14.93465 -14.70370 -14.43413 -14.16308 -14.00973 -13.94967 -13.74691 -13.58584 -13.43948 -13.26024 -13.06789 -12.97675 -12.74553 -12.51357 -12.01759 -11.59176 -11.53532 -11.44148 -11.06067 -10.97849 -10.73744 -10.45484 -9.68736 -9.54881 -8.33478 -6.41203 -0.01359 1.31983 1.33759 1.39973 1.43252 1.48034 1.60253 1.95800 2.03604 2.29665 2.32178 3.01555 3.31398 3.66819 3.95157 3.96639 4.03762 4.10686 4.30325 4.45746 4.51022 4.54794 4.60890 4.63322 4.70959 4.74251 4.90256 4.90746 4.93780 4.95236 5.03471 5.08187 5.23204 5.39678 5.47523 5.65308 5.81647 6.06934 6.30881 6.52851 6.63355 6.86771 7.02334 7.26241 8.82818 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.004510 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.069706 B = 6206.333919 C = 6921.448571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 H 0.096 0.904 4 N -0.696 5.696 5 C 0.601 3.399 6 O -0.555 6.555 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.231 4.231 10 C 0.012 3.988 11 O -0.174 6.174 12 C 0.511 3.489 13 O -0.576 6.576 14 N -0.583 5.583 15 C 0.093 3.907 16 C 0.224 3.776 17 H 0.059 0.941 18 C -0.160 4.160 19 C -0.536 4.536 20 H 0.036 0.964 21 C 0.023 3.977 22 N -0.940 5.940 23 Si 0.938 3.062 24 H -0.255 1.255 25 H -0.302 1.302 26 H -0.237 1.237 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.417 0.583 31 H 0.160 0.840 32 H 0.188 0.812 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 -13.701 -13.277 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 H 0.114 0.886 4 N -0.349 5.349 5 C 0.389 3.611 6 O -0.435 6.435 7 C -0.163 4.163 8 C -0.141 4.141 9 C -0.250 4.250 10 C -0.057 4.057 11 O -0.070 6.070 12 C 0.298 3.702 13 O -0.458 6.458 14 N -0.313 5.313 15 C -0.049 4.049 16 C 0.121 3.879 17 H 0.077 0.923 18 C -0.218 4.218 19 C -0.575 4.575 20 H 0.054 0.946 21 C -0.176 4.176 22 N -0.579 5.579 23 Si 0.764 3.236 24 H -0.181 1.181 25 H -0.230 1.230 26 H -0.161 1.161 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.255 0.745 31 H 0.178 0.822 32 H 0.206 0.794 33 H 0.273 0.727 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.716 -13.480 -12.966 19.557 hybrid contribution 0.126 0.729 0.179 0.761 sum -5.590 -12.750 -12.787 18.903 Atomic orbital electron populations 1.22132 0.90613 1.04109 1.04223 1.20827 0.97547 0.97154 0.82948 0.88607 1.45634 1.66241 1.14969 1.08033 1.16855 0.77158 0.85427 0.81651 1.90877 1.52440 1.15549 1.84649 1.21642 1.14177 0.83833 0.96677 1.22285 0.98651 1.02031 0.91089 1.22235 1.07706 0.91945 1.03110 1.25468 0.97933 1.02537 0.79775 1.84088 1.64082 1.25520 1.33266 1.20509 0.78271 0.86292 0.85087 1.90591 1.51356 1.17843 1.85987 1.47892 1.57682 1.16529 1.09162 1.21573 0.98406 0.97485 0.87434 1.19431 0.92652 0.78680 0.97133 0.92317 1.22377 0.98594 1.00792 1.00037 1.21368 0.94308 0.92296 1.49479 0.94573 1.25744 1.01471 0.96730 0.93684 1.70030 1.34563 1.03943 1.49383 0.86025 0.80250 0.77286 0.80058 1.18065 1.22953 1.16059 0.89926 0.90659 0.90051 0.74486 0.82231 0.79439 0.72656 0.90924 0.92261 0.90893 0.93335 0.91684 0.91104 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.06 71.98 0.65 -3.86 16 2 C 0.12 4.46 2.11 44.25 0.09 4.55 16 3 H 0.10 4.05 6.41 -2.39 -0.02 4.04 16 4 N -0.70 -23.18 5.04 -450.09 -2.27 -25.45 16 5 C 0.60 20.65 7.75 86.44 0.67 21.32 16 6 O -0.55 -22.57 16.53 -4.32 -0.07 -22.64 16 7 C -0.11 -3.13 7.13 24.07 0.17 -2.96 16 8 C -0.12 -2.82 10.62 22.39 0.24 -2.58 16 9 C -0.23 -3.59 10.87 22.07 0.24 -3.35 16 10 C 0.01 0.17 12.08 67.10 0.81 0.98 16 11 O -0.17 -3.99 10.40 -5.04 -0.05 -4.05 16 12 C 0.51 19.82 6.91 87.66 0.61 20.43 16 13 O -0.58 -23.37 15.61 -3.05 -0.05 -23.41 16 14 N -0.58 -23.06 2.75 -826.79 -2.28 -25.34 16 15 C 0.09 3.29 9.23 127.77 1.18 4.47 16 16 C 0.22 9.48 1.45 44.24 0.06 9.55 16 17 H 0.06 2.48 3.62 -2.39 -0.01 2.47 16 18 C -0.16 -5.81 8.59 71.98 0.62 -5.19 16 19 C -0.54 -28.66 8.65 25.60 0.22 -28.44 16 20 H 0.04 2.20 8.03 -2.91 -0.02 2.18 16 21 C 0.02 1.26 5.45 84.65 0.46 1.72 16 22 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 23 Si 0.94 41.41 24.37 68.60 1.67 43.08 16 24 H -0.26 -10.40 6.87 99.48 0.68 -9.72 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.24 -9.38 6.53 99.48 0.65 -8.74 16 27 H 0.08 2.36 6.65 -2.39 -0.02 2.34 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.42 12.95 7.49 -92.71 -0.69 12.25 16 31 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.26 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.06 2.10 7.61 -2.39 -0.02 2.08 16 36 H 0.07 2.71 7.35 -2.39 -0.02 2.69 16 37 H 0.05 1.81 3.28 -2.38 -0.01 1.81 16 38 H 0.06 2.29 7.44 -2.39 -0.02 2.28 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 40 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -71.62 331.99 3.59 -68.04 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.30 Total: 29.57 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.03 Total: 16.63 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -4.24 Total: -107.22 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.17 Total: -50.10 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.67 Total: 43.08 kcal Total: -71.62 3.59 -68.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.727 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds