Wall clock time and date at job start Tue Mar 31 2020 07:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.34776 * 120.00038 * 180.02562 * 18 17 16 20 20 O 1.21694 * 119.99794 * 359.97438 * 19 18 17 21 21 C 1.46660 * 119.99939 * 179.97438 * 19 18 17 22 22 C 1.36540 * 125.98559 * 179.71179 * 21 19 18 23 23 C 1.40370 * 106.70632 * 179.91193 * 22 21 19 24 24 C 1.35126 * 107.11075 * 0.35136 * 23 22 21 25 25 O 1.33928 * 108.77207 * 359.78257 * 24 23 22 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 36 36 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 37 37 H 0.97000 * 119.99454 * 359.97438 * 18 17 16 38 38 H 1.07999 * 126.65060 * 0.03684 * 22 21 19 39 39 H 1.07999 * 126.44459 * 180.15713 * 23 22 21 40 40 H 1.08005 * 125.61433 * 179.78639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 5.4101 0.1800 -6.2291 20 8 5.7044 1.3450 -6.0362 21 6 5.8994 -0.5114 -7.4264 22 6 6.6838 0.0325 -8.4027 23 6 6.9108 -0.9795 -9.3485 24 6 6.2566 -2.0805 -8.9174 25 8 5.6484 -1.7945 -7.7590 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 3.5409 1.0721 -4.4431 36 1 4.9938 0.5582 -3.5525 37 1 4.4003 -1.4035 -5.4959 38 1 7.0589 1.0447 -8.4391 39 1 7.4954 -0.8934 -10.2525 40 1 6.2289 -3.0342 -9.4237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:44 Heat of formation + Delta-G solvation = -80.832396 kcal Electronic energy + Delta-G solvation = -22831.439595 eV Core-core repulsion = 19226.207995 eV Total energy + Delta-G solvation = -3605.231600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.62878 -40.99415 -40.38621 -37.27716 -36.38048 -34.81135 -34.04332 -32.65784 -31.30018 -30.25817 -27.53189 -27.30035 -25.89708 -23.76249 -22.72134 -22.49957 -21.49100 -20.07124 -19.35478 -18.52500 -18.05470 -17.46300 -17.36258 -17.00753 -16.90147 -16.55281 -15.96570 -15.86811 -15.19543 -14.84561 -14.51883 -14.26038 -14.08383 -13.93099 -13.77283 -13.54839 -13.53349 -13.20500 -12.94002 -12.74962 -12.66507 -12.63122 -12.46001 -12.17450 -12.11655 -11.61769 -11.19222 -11.04435 -10.69292 -10.47622 -10.39656 -9.64387 -9.31462 -8.14004 -6.30689 0.01523 1.41673 1.43911 1.44469 1.51524 1.57797 1.80093 2.04559 2.06044 2.38358 2.60432 3.14032 3.57321 3.78766 3.89557 3.96623 4.03226 4.14174 4.38591 4.59616 4.62434 4.76802 4.77714 4.84055 4.84920 4.91530 4.93464 4.97173 5.07709 5.11340 5.16878 5.40675 5.48913 5.60765 5.68146 5.82896 6.04773 6.17317 6.38171 6.77620 6.84214 6.95561 7.32529 7.48832 8.90214 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033040 B = 0.002578 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.266364 B =10857.241187 C =10954.830481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.006 0.994 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.286 1.286 10 H -0.260 1.260 11 H -0.278 1.278 12 N -0.600 5.600 13 C 0.076 3.924 14 C 0.494 3.506 15 O -0.608 6.608 16 C -0.130 4.130 17 C 0.142 3.858 18 N -0.701 5.701 19 C 0.597 3.403 20 O -0.567 6.567 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.236 4.236 24 C 0.016 3.984 25 O -0.167 6.167 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.422 0.578 38 H 0.154 0.846 39 H 0.183 0.817 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 -13.976 -23.577 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.156 3.844 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.211 1.211 10 H -0.184 1.184 11 H -0.203 1.203 12 N -0.330 5.330 13 C -0.066 4.066 14 C 0.283 3.717 15 O -0.491 6.491 16 C -0.169 4.169 17 C 0.018 3.982 18 N -0.352 5.352 19 C 0.385 3.615 20 O -0.448 6.448 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.255 4.255 24 C -0.053 4.053 25 O -0.062 6.062 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.260 0.740 38 H 0.172 0.828 39 H 0.200 0.800 40 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 7.234 -12.670 -22.954 27.198 hybrid contribution 0.178 0.121 1.073 1.094 sum 7.412 -12.549 -21.882 26.291 Atomic orbital electron populations 1.21857 0.97121 1.00156 0.99828 1.18529 0.91662 0.92218 0.81946 0.97642 1.21562 1.31863 1.13113 0.91058 0.91781 1.25777 0.95130 0.95672 1.02164 1.70029 1.37370 1.23937 1.24444 0.85499 0.78343 0.79049 0.78053 1.21147 1.18442 1.20342 1.48242 1.48884 1.13645 1.22230 1.21930 1.01689 0.80150 1.02810 1.21147 0.78462 0.86691 0.85414 1.90671 1.60160 1.19973 1.78296 1.21737 1.02470 0.99376 0.93349 1.20853 0.97676 0.94832 0.84839 1.45663 1.50795 1.16571 1.22216 1.16857 0.78219 0.85161 0.81270 1.90891 1.59990 1.17391 1.76495 1.21629 1.09702 0.84621 0.99990 1.22276 0.97387 1.01848 0.93345 1.22224 1.07155 0.92639 1.03464 1.25436 0.93579 1.02208 0.84121 1.84050 1.59322 1.26267 1.36554 0.91625 0.96205 0.93261 0.92705 0.91364 0.88336 0.91479 0.85140 0.84789 0.92449 0.92765 0.73983 0.82796 0.79956 0.72548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.97 71.98 0.65 -5.66 16 2 C 0.26 13.45 2.64 44.24 0.12 13.56 16 3 H 0.01 0.35 6.90 -2.39 -0.02 0.34 16 4 C -0.54 -29.00 7.99 25.60 0.20 -28.79 16 5 H 0.06 3.30 7.33 -2.91 -0.02 3.28 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 8 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.60 -24.28 2.75 -826.80 -2.28 -26.56 16 13 C 0.08 2.13 9.24 127.77 1.18 3.31 16 14 C 0.49 19.51 7.67 87.66 0.67 20.18 16 15 O -0.61 -31.12 15.31 -3.03 -0.05 -31.17 16 16 C -0.13 -3.10 4.37 29.85 0.13 -2.97 16 17 C 0.14 4.03 4.96 86.38 0.43 4.46 16 18 N -0.70 -15.45 5.55 -467.10 -2.59 -18.04 16 19 C 0.60 16.24 7.79 86.44 0.67 16.91 16 20 O -0.57 -20.58 16.86 -4.33 -0.07 -20.65 16 21 C -0.11 -2.28 7.13 24.07 0.17 -2.11 16 22 C -0.13 -2.41 10.62 22.39 0.24 -2.17 16 23 C -0.24 -2.62 10.88 22.07 0.24 -2.38 16 24 C 0.02 0.13 12.08 67.10 0.81 0.94 16 25 O -0.17 -2.49 10.40 -4.98 -0.05 -2.54 16 26 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 27 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.86 6.44 -2.38 -0.02 1.84 16 32 H 0.07 2.10 7.02 -2.39 -0.02 2.08 16 33 H 0.13 2.29 7.40 -2.39 -0.02 2.28 16 34 H 0.13 2.23 8.11 -2.39 -0.02 2.21 16 35 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.42 6.02 8.23 -92.71 -0.76 5.26 16 38 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.26 -0.62 8.06 -2.91 -0.02 -0.64 16 Total: -1.00 -81.81 342.82 3.49 -78.32 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.30 Total: 12.52 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.96 Total: 16.38 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -4.63 Total: -97.85 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.17 Total: -54.36 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -81.81 3.49 -78.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.511 kcal (2) G-P(sol) polarization free energy of solvation -81.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds