Wall clock time and date at job start Tue Mar 31 2020 07:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.50699 * 109.46851 * 240.00066 * 2 1 3 5 5 H 1.08006 * 119.99695 * 239.99659 * 4 2 1 6 6 C 1.37873 * 120.00288 * 59.99795 * 4 2 1 7 7 N 1.31514 * 119.99737 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47061 * 60.00068 * 8 6 4 10 10 H 1.48502 * 109.47346 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46964 * 300.00120 * 8 6 4 12 12 N 1.46502 * 109.47176 * 119.99787 * 2 1 3 13 13 C 1.46505 * 119.99936 * 60.00481 * 12 2 1 14 14 C 1.34771 * 120.00230 * 239.99642 * 12 2 1 15 15 O 1.21287 * 119.99435 * 0.02562 * 14 12 2 16 16 C 1.50693 * 120.00299 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47435 * 180.02562 * 16 14 12 18 18 N 1.46493 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 16 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47786 * 60.00318 * 1 2 3 27 27 H 1.09008 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46903 * 299.99702 * 1 2 3 29 29 H 0.97009 * 119.99733 * 179.97438 * 7 6 4 30 30 H 1.09008 * 109.46456 * 269.99578 * 13 12 2 31 31 H 1.09003 * 109.47318 * 29.99063 * 13 12 2 32 32 H 1.08996 * 109.47235 * 149.99893 * 13 12 2 33 33 H 1.08997 * 109.47542 * 59.99831 * 16 14 12 34 34 H 1.09001 * 109.46974 * 300.00200 * 16 14 12 35 35 H 1.08997 * 109.47315 * 59.99176 * 17 16 14 36 36 H 1.09001 * 109.46782 * 299.99802 * 17 16 14 37 37 H 0.96998 * 120.00266 * 359.97438 * 18 17 16 38 38 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 39 39 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9426 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8267 -0.4200 -5.2205 11 1 3.8073 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.0859 1.1257 1.8915 16 6 3.2961 -0.7461 3.3134 17 6 4.1455 0.2157 4.1466 18 7 4.6348 -0.4752 5.3421 19 6 5.4098 0.1798 6.2292 20 8 5.7035 1.3450 6.0368 21 6 5.8992 -0.5117 7.4264 22 6 6.6881 0.0306 8.4001 23 6 6.9121 -0.9804 9.3476 24 6 6.2579 -2.0814 8.9165 25 8 5.6490 -1.7951 7.7585 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7086 1.1612 -3.4844 30 1 0.7376 -2.1444 1.9994 31 1 1.5295 -2.5969 0.4708 32 1 2.4630 -2.5819 1.9864 33 1 3.9017 -1.6023 3.0166 34 1 2.4485 -1.0890 3.9069 35 1 3.5396 1.0717 4.4435 36 1 4.9931 0.5590 3.5533 37 1 4.4010 -1.4040 5.4954 38 1 7.0664 1.0416 8.4344 39 1 7.4966 -0.8943 10.2516 40 1 6.2275 -3.0341 9.4243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:48 Heat of formation + Delta-G solvation = -55.642234 kcal Electronic energy + Delta-G solvation = -22830.363195 eV Core-core repulsion = 19226.223922 eV Total energy + Delta-G solvation = -3604.139273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.98774 -39.72345 -39.01340 -35.67970 -35.07503 -33.40395 -32.91838 -31.40189 -30.04976 -28.97223 -26.15176 -25.25708 -24.75087 -22.73051 -22.03722 -20.95535 -20.54441 -18.95263 -18.09949 -16.84327 -16.68684 -16.55110 -16.39074 -15.73537 -15.51538 -15.10705 -14.62622 -14.26027 -14.20586 -13.47903 -13.36819 -13.33262 -13.02728 -12.77755 -12.50307 -12.32607 -12.00850 -11.57512 -11.43320 -11.37810 -11.05621 -10.85545 -10.70895 -10.50609 -10.40755 -10.27960 -10.18054 -9.33918 -9.22162 -9.00119 -8.96356 -8.43873 -7.63262 -6.08538 -4.16940 0.77268 2.02704 2.36129 2.96445 2.98607 3.26435 3.29970 3.32428 3.35466 3.96298 4.36187 4.39256 4.56084 4.67200 4.88020 5.12722 5.14789 5.22902 5.29427 5.42727 5.47240 5.55186 5.73182 5.92126 5.96605 6.00508 6.01559 6.20361 6.32603 6.49048 6.73704 6.81414 7.04552 7.25640 7.38572 7.51521 7.69662 7.89768 7.99509 8.18111 8.48837 8.80322 9.00357 9.49459 10.96737 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033030 B = 0.002578 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.500341 B =10857.023661 C =10954.292631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.507 3.493 15 O -0.549 6.549 16 C -0.153 4.153 17 C 0.133 3.867 18 N -0.719 5.719 19 C 0.600 3.400 20 O -0.515 6.515 21 C -0.075 4.075 22 C -0.123 4.123 23 C -0.225 4.225 24 C -0.009 4.009 25 O -0.165 6.165 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.011 0.989 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.404 0.596 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -9.833 21.483 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.293 3.707 15 O -0.428 6.428 16 C -0.193 4.193 17 C 0.010 3.990 18 N -0.370 5.370 19 C 0.385 3.615 20 O -0.392 6.392 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.244 4.244 24 C -0.079 4.079 25 O -0.060 6.060 26 H 0.112 0.888 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.238 0.762 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.836 -8.436 20.832 23.492 hybrid contribution 0.272 -1.140 -0.558 1.298 sum 7.108 -9.576 20.274 23.522 Atomic orbital electron populations 1.22082 0.98153 0.99367 1.00826 1.18956 0.90905 0.94592 0.79859 0.91823 1.21265 1.31972 1.13066 0.90309 0.92313 1.24898 0.94927 0.94985 0.98983 1.69872 1.36176 1.22528 1.23907 0.86545 0.79249 0.79519 0.81997 1.20259 1.21153 1.20236 1.48243 1.48868 1.11654 1.23552 1.21619 0.98755 0.83293 1.02477 1.20039 0.79531 0.87113 0.84065 1.90695 1.58312 1.17012 1.76792 1.21844 1.01047 0.99896 0.96539 1.21183 0.98872 0.94746 0.84160 1.45936 1.51514 1.15950 1.23550 1.16521 0.78775 0.85588 0.80589 1.90927 1.58029 1.15107 1.75124 1.22177 1.07261 0.83272 1.00046 1.22013 0.98113 1.01312 0.92886 1.21881 1.06344 0.93315 1.02892 1.24419 0.96608 1.00964 0.85912 1.84060 1.58946 1.27560 1.35419 0.88821 0.95189 0.97022 0.92587 0.93832 0.90025 0.92808 0.88659 0.88820 0.90023 0.89952 0.76167 0.82154 0.82581 0.77320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.26 6.50 2.64 -69.08 -0.18 6.31 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.08 7.99 -34.44 -0.28 -14.35 16 5 H 0.06 1.53 7.33 -52.48 -0.38 1.14 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.59 -12.18 2.75 -175.26 -0.48 -12.66 16 13 C 0.08 1.29 9.24 59.85 0.55 1.84 16 14 C 0.51 10.00 7.67 -10.99 -0.08 9.92 16 15 O -0.55 -13.30 15.31 5.55 0.08 -13.21 16 16 C -0.15 -2.02 4.37 -27.89 -0.12 -2.14 16 17 C 0.13 1.88 4.96 -4.05 -0.02 1.86 16 18 N -0.72 -8.28 5.55 -61.63 -0.34 -8.62 16 19 C 0.60 8.04 7.79 -12.86 -0.10 7.94 16 20 O -0.51 -8.80 16.86 5.19 0.09 -8.72 16 21 C -0.08 -0.83 7.13 -36.79 -0.26 -1.10 16 22 C -0.12 -1.20 10.62 -39.39 -0.42 -1.62 16 23 C -0.23 -1.59 10.87 -39.89 -0.43 -2.03 16 24 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 25 O -0.16 -1.47 10.40 5.00 0.05 -1.42 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.65 7.67 -51.92 -0.40 0.25 16 28 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 32 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 33 H 0.10 1.06 7.40 -51.93 -0.38 0.67 16 34 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 37 H 0.40 3.46 8.23 -40.82 -0.34 3.12 16 38 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.21 0.40 8.06 -52.49 -0.42 -0.02 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -34.07 342.81 -5.96 -40.03 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.39 Total: 2.50 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.75 Total: 5.47 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.20 Total: -45.69 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.22 Total: -23.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.07 -5.96 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.610 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds