Wall clock time and date at job start Tue Mar 31 2020 07:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47284 * 2 1 4 4 C 1.53003 * 109.46966 * 120.00252 * 2 1 3 5 5 O 1.42901 * 109.47213 * 54.99891 * 4 2 1 6 6 N 1.46504 * 109.46847 * 240.00054 * 2 1 3 7 7 C 1.34774 * 119.99862 * 85.00426 * 6 2 1 8 8 O 1.21586 * 120.00017 * 359.97438 * 7 6 2 9 9 N 1.34774 * 119.99877 * 180.02562 * 7 6 2 10 10 C 1.46499 * 119.99922 * 179.72216 * 9 7 6 11 11 C 1.50702 * 109.47074 * 180.27298 * 10 9 7 12 12 C 1.38325 * 119.96491 * 269.72403 * 11 10 9 13 13 C 1.38283 * 120.13698 * 179.76955 * 12 11 10 14 14 C 1.38129 * 120.06595 * 0.50920 * 13 12 11 15 15 C 1.38851 * 119.93121 * 359.74214 * 14 13 12 16 16 O 1.35749 * 120.06741 * 179.97438 * 15 14 13 17 17 C 1.34827 * 117.00296 * 354.50117 * 16 15 14 18 18 H 1.08003 * 120.00182 * 5.04631 * 17 16 15 19 19 C 1.38655 * 120.00529 * 185.05233 * 17 16 15 20 20 N 1.31565 * 119.99520 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00503 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46770 * 59.99949 * 21 19 17 23 23 H 1.48498 * 109.47303 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47177 * 300.00146 * 21 19 17 25 25 C 1.38076 * 119.96443 * 90.00280 * 11 10 9 26 26 H 1.09003 * 109.46982 * 300.00162 * 1 2 3 27 27 H 1.08996 * 109.46958 * 59.99489 * 1 2 3 28 28 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47052 * 174.99699 * 4 2 1 30 30 H 1.08996 * 109.47039 * 294.99766 * 4 2 1 31 31 H 0.96695 * 114.00248 * 179.97438 * 5 4 2 32 32 H 0.96995 * 119.99736 * 264.99886 * 6 2 1 33 33 H 0.96995 * 120.00312 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47639 * 300.27251 * 10 9 7 35 35 H 1.09005 * 109.47077 * 60.27569 * 10 9 7 36 36 H 1.07993 * 119.93149 * 359.97438 * 12 11 10 37 37 H 1.07992 * 119.96593 * 180.25688 * 13 12 11 38 38 H 1.08007 * 120.03044 * 179.77294 * 14 13 12 39 39 H 0.97003 * 119.99613 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.03761 * 359.95513 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4702 -2.0304 1.3094 6 7 2.0183 -0.6906 -1.1962 7 6 2.1471 -0.0182 -2.3571 8 8 1.8576 1.1614 -2.4118 9 7 2.5958 -0.6537 -3.4577 10 6 2.7300 0.0757 -4.7211 11 6 3.2407 -0.8578 -5.7883 12 6 4.6018 -0.9924 -5.9948 13 6 5.0745 -1.8516 -6.9698 14 6 4.1878 -2.5702 -7.7478 15 6 2.8208 -2.4334 -7.5464 16 8 1.9470 -3.1379 -8.3098 17 6 2.4649 -3.8651 -9.3201 18 1 3.5358 -3.9342 -9.4421 19 6 1.6228 -4.5242 -10.2027 20 7 0.3183 -4.4404 -10.0540 21 14 2.3404 -5.5311 -11.6029 22 1 3.1953 -6.6113 -11.0483 23 1 1.2382 -6.1312 -12.3967 24 1 3.1584 -4.6518 -12.4764 25 6 2.3493 -1.5735 -6.5627 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1264 -0.7996 1.2056 30 1 1.7517 -0.1584 2.1369 31 1 1.7505 -2.5465 2.0776 32 1 2.2490 -1.6317 -1.1526 33 1 2.8264 -1.5948 -3.4142 34 1 1.7582 0.4700 -5.0181 35 1 3.4323 0.8993 -4.5924 36 1 5.2968 -0.4279 -5.3911 37 1 6.1378 -1.9576 -7.1259 38 1 4.5576 -3.2384 -8.5117 39 1 -0.2708 -4.9012 -10.6717 40 1 1.2866 -1.4651 -6.4036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113629747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:17 Heat of formation + Delta-G solvation = -86.634926 kcal Electronic energy + Delta-G solvation = -22591.501196 eV Core-core repulsion = 18986.017979 eV Total energy + Delta-G solvation = -3605.483217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08606 -39.09546 -37.76120 -36.78084 -34.93987 -34.31060 -32.33355 -31.43149 -30.06847 -29.03916 -26.72644 -25.84838 -25.01664 -21.84422 -21.62433 -20.76564 -20.61845 -18.71052 -17.79736 -17.58142 -17.02885 -16.37611 -15.53208 -15.13307 -15.09696 -14.74483 -14.49943 -14.36328 -14.23967 -13.72950 -13.61806 -13.43891 -13.06407 -12.74932 -12.52319 -12.35875 -12.11303 -11.70466 -11.62712 -11.36283 -11.20399 -10.91900 -10.80915 -10.69531 -10.48915 -10.47084 -10.12810 -9.40574 -9.25188 -8.88296 -8.73255 -8.23837 -7.31938 -6.48303 -4.07973 1.88620 2.27818 2.87774 3.10833 3.12315 3.15005 3.29825 3.86543 3.93224 4.29161 4.55422 4.61504 4.77361 4.95786 4.98558 5.08064 5.24807 5.29976 5.36351 5.55380 5.59458 5.79209 5.82736 5.86737 5.96774 6.08742 6.18941 6.26615 6.48983 6.57013 6.60939 6.83178 6.97566 7.03403 7.20158 7.20848 7.28406 7.36659 7.72106 7.95674 8.10615 8.68570 8.96833 9.65766 10.69408 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002727 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.277258 B =10266.407153 C =10779.022082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 H 0.098 0.902 4 C 0.067 3.933 5 O -0.569 6.569 6 N -0.741 5.741 7 C 0.703 3.297 8 O -0.598 6.598 9 N -0.737 5.737 10 C 0.187 3.813 11 C -0.072 4.072 12 C -0.194 4.194 13 C -0.077 4.077 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.170 4.170 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.380 0.620 32 H 0.400 0.600 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.271 0.729 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 4.568 19.128 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.058 3.942 3 H 0.116 0.884 4 C -0.011 4.011 5 O -0.374 6.374 6 N -0.398 5.398 7 C 0.403 3.597 8 O -0.477 6.477 9 N -0.391 5.391 10 C 0.064 3.936 11 C -0.073 4.073 12 C -0.214 4.214 13 C -0.095 4.095 14 C -0.246 4.246 15 C 0.096 3.904 16 O -0.080 6.080 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.190 4.190 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.234 0.766 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.823 5.767 18.393 19.870 hybrid contribution 0.940 -1.627 -0.223 1.892 sum 5.763 4.140 18.170 19.507 Atomic orbital electron populations 1.22096 0.94891 1.02815 1.02108 1.20857 0.94939 0.96314 0.82121 0.88443 1.22509 0.96875 0.84338 0.97395 1.86509 1.72951 1.27173 1.50774 1.45122 1.71926 1.13925 1.08777 1.15977 0.78273 0.85081 0.80356 1.90900 1.57555 1.14495 1.84719 1.45256 1.70855 1.14145 1.08864 1.19989 1.01159 0.92578 0.79909 1.19289 0.93381 0.97950 0.96703 1.20481 0.94104 1.04246 1.02550 1.20744 0.98335 0.95513 0.94908 1.21239 0.93054 1.05720 1.04561 1.19324 0.89266 0.90450 0.91327 1.83982 1.32625 1.52762 1.38584 1.21275 0.93183 1.27460 1.05079 0.89101 1.25297 0.95164 0.97710 0.98291 1.70034 1.02223 1.40657 1.36671 0.85778 0.78415 0.79431 0.79791 1.19499 1.20246 1.19467 1.20102 0.99353 1.00428 0.99072 0.92150 0.91989 0.91587 0.92953 0.92127 0.77254 0.76595 0.76738 0.91063 0.91162 0.87511 0.87315 0.85488 0.91898 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.29 37.16 0.35 -1.30 16 2 C 0.16 1.59 2.98 -67.92 -0.20 1.38 16 3 H 0.10 1.03 7.58 -51.93 -0.39 0.63 16 4 C 0.07 0.43 6.79 37.16 0.25 0.69 16 5 O -0.57 -3.90 12.51 -35.23 -0.44 -4.34 16 6 N -0.74 -8.25 5.06 -58.67 -0.30 -8.55 16 7 C 0.70 10.20 8.53 -86.92 -0.74 9.46 16 8 O -0.60 -10.77 16.01 5.29 0.08 -10.68 16 9 N -0.74 -10.15 5.55 -66.41 -0.37 -10.52 16 10 C 0.19 2.85 5.80 -5.19 -0.03 2.82 16 11 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 12 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 13 C -0.08 -1.35 10.04 -39.60 -0.40 -1.74 16 14 C -0.23 -4.74 9.17 -39.39 -0.36 -5.10 16 15 C 0.15 3.53 6.65 -39.11 -0.26 3.27 16 16 O -0.18 -4.95 9.76 0.06 0.00 -4.94 16 17 C -0.39 -10.83 9.49 30.89 0.29 -10.54 16 18 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 21 Si 0.94 20.25 29.55 -169.99 -5.02 15.22 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.17 -3.47 9.65 -39.39 -0.38 -3.85 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.72 7.56 -51.93 -0.39 0.32 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.38 0.96 9.12 45.56 0.42 1.38 16 32 H 0.40 3.82 8.40 -40.82 -0.34 3.48 16 33 H 0.40 4.90 8.48 -40.82 -0.35 4.56 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 40 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -33.49 345.43 -7.15 -40.65 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.56 Total: 11.58 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.51 Total: -9.31 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.09 Total: -43.38 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.36 Total: -19.97 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.49 -7.15 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113629747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.990 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds