Wall clock time and date at job start Tue Mar 31 2020 07:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47284 * 2 1 4 4 C 1.53003 * 109.46966 * 120.00252 * 2 1 3 5 5 O 1.42901 * 109.47213 * 54.99891 * 4 2 1 6 6 N 1.46504 * 109.46847 * 240.00054 * 2 1 3 7 7 C 1.34774 * 119.99862 * 85.00426 * 6 2 1 8 8 O 1.21586 * 120.00017 * 359.97438 * 7 6 2 9 9 N 1.34774 * 119.99877 * 180.02562 * 7 6 2 10 10 C 1.46499 * 119.99922 * 179.72216 * 9 7 6 11 11 C 1.50702 * 109.47074 * 180.27298 * 10 9 7 12 12 C 1.38325 * 119.96491 * 269.72403 * 11 10 9 13 13 C 1.38283 * 120.13698 * 179.76955 * 12 11 10 14 14 C 1.38129 * 120.06595 * 0.50920 * 13 12 11 15 15 C 1.38851 * 119.93121 * 359.74214 * 14 13 12 16 16 O 1.35749 * 120.06741 * 179.97438 * 15 14 13 17 17 C 1.34827 * 117.00296 * 354.50117 * 16 15 14 18 18 H 1.08003 * 120.00182 * 5.04631 * 17 16 15 19 19 C 1.38655 * 120.00529 * 185.05233 * 17 16 15 20 20 N 1.31565 * 119.99520 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00503 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46770 * 59.99949 * 21 19 17 23 23 H 1.48498 * 109.47303 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47177 * 300.00146 * 21 19 17 25 25 C 1.38076 * 119.96443 * 90.00280 * 11 10 9 26 26 H 1.09003 * 109.46982 * 300.00162 * 1 2 3 27 27 H 1.08996 * 109.46958 * 59.99489 * 1 2 3 28 28 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47052 * 174.99699 * 4 2 1 30 30 H 1.08996 * 109.47039 * 294.99766 * 4 2 1 31 31 H 0.96695 * 114.00248 * 179.97438 * 5 4 2 32 32 H 0.96995 * 119.99736 * 264.99886 * 6 2 1 33 33 H 0.96995 * 120.00312 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47639 * 300.27251 * 10 9 7 35 35 H 1.09005 * 109.47077 * 60.27569 * 10 9 7 36 36 H 1.07993 * 119.93149 * 359.97438 * 12 11 10 37 37 H 1.07992 * 119.96593 * 180.25688 * 13 12 11 38 38 H 1.08007 * 120.03044 * 179.77294 * 14 13 12 39 39 H 0.97003 * 119.99613 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.03761 * 359.95513 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4702 -2.0304 1.3094 6 7 2.0183 -0.6906 -1.1962 7 6 2.1471 -0.0182 -2.3571 8 8 1.8576 1.1614 -2.4118 9 7 2.5958 -0.6537 -3.4577 10 6 2.7300 0.0757 -4.7211 11 6 3.2407 -0.8578 -5.7883 12 6 4.6018 -0.9924 -5.9948 13 6 5.0745 -1.8516 -6.9698 14 6 4.1878 -2.5702 -7.7478 15 6 2.8208 -2.4334 -7.5464 16 8 1.9470 -3.1379 -8.3098 17 6 2.4649 -3.8651 -9.3201 18 1 3.5358 -3.9342 -9.4421 19 6 1.6228 -4.5242 -10.2027 20 7 0.3183 -4.4404 -10.0540 21 14 2.3404 -5.5311 -11.6029 22 1 3.1953 -6.6113 -11.0483 23 1 1.2382 -6.1312 -12.3967 24 1 3.1584 -4.6518 -12.4764 25 6 2.3493 -1.5735 -6.5627 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1264 -0.7996 1.2056 30 1 1.7517 -0.1584 2.1369 31 1 1.7505 -2.5465 2.0776 32 1 2.2490 -1.6317 -1.1526 33 1 2.8264 -1.5948 -3.4142 34 1 1.7582 0.4700 -5.0181 35 1 3.4323 0.8993 -4.5924 36 1 5.2968 -0.4279 -5.3911 37 1 6.1378 -1.9576 -7.1259 38 1 4.5576 -3.2384 -8.5117 39 1 -0.2708 -4.9012 -10.6717 40 1 1.2866 -1.4651 -6.4036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113629747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:16 Heat of formation + Delta-G solvation = -113.720680 kcal Electronic energy + Delta-G solvation = -22592.675722 eV Core-core repulsion = 18986.017979 eV Total energy + Delta-G solvation = -3606.657743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25227 -40.70937 -38.69935 -38.18846 -35.89118 -35.51532 -34.28664 -32.63089 -31.30484 -30.60082 -27.58864 -27.35069 -26.61973 -23.28321 -22.82069 -22.25481 -21.58016 -19.95431 -19.30100 -18.70230 -18.32846 -17.39269 -16.84368 -16.65013 -16.19134 -16.10373 -16.00268 -15.55506 -15.44434 -15.22724 -14.90133 -14.50557 -14.33450 -13.96293 -13.84007 -13.67382 -13.42454 -13.18441 -13.00119 -12.51928 -12.44581 -12.37449 -12.26821 -12.14155 -11.95447 -11.40484 -11.20711 -10.90037 -10.80049 -10.37968 -9.79529 -9.76457 -9.03406 -8.46801 -6.15638 0.36943 0.70826 1.35685 1.46027 1.52021 1.80282 2.15381 2.17972 2.81515 3.12561 3.32614 3.41068 3.48227 3.83481 3.92128 4.09926 4.15879 4.31358 4.43014 4.44569 4.53499 4.61206 4.64041 4.69202 4.73419 4.85373 4.99070 5.02383 5.11579 5.25855 5.33217 5.42911 5.59878 5.62540 5.70850 5.72300 5.99123 6.02427 6.17382 6.95321 6.97761 7.07425 7.57113 7.78306 8.76212 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002727 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.277258 B =10266.407153 C =10779.022082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.089 0.911 4 C 0.077 3.923 5 O -0.588 6.588 6 N -0.728 5.728 7 C 0.700 3.300 8 O -0.635 6.635 9 N -0.731 5.731 10 C 0.194 3.806 11 C -0.058 4.058 12 C -0.167 4.167 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.112 3.888 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.182 4.182 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.400 0.600 32 H 0.409 0.591 33 H 0.407 0.593 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.272 0.728 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.973 4.847 20.991 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.107 0.893 4 C -0.001 4.001 5 O -0.396 6.396 6 N -0.384 5.384 7 C 0.400 3.600 8 O -0.516 6.516 9 N -0.386 5.386 10 C 0.070 3.930 11 C -0.059 4.059 12 C -0.186 4.186 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.122 0.878 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.201 4.201 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.250 0.750 32 H 0.245 0.755 33 H 0.243 0.757 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.997 6.033 20.335 22.668 hybrid contribution 0.098 -1.508 -0.502 1.592 sum 8.095 4.525 19.833 21.894 Atomic orbital electron populations 1.22037 0.95502 1.02145 1.01680 1.21069 0.94483 0.96568 0.82952 0.89259 1.22406 0.97285 0.84319 0.96131 1.86455 1.73387 1.27496 1.52312 1.45097 1.70823 1.14287 1.08201 1.16121 0.78046 0.84725 0.81075 1.90876 1.59157 1.16240 1.85374 1.45081 1.70854 1.14443 1.08260 1.19856 1.00843 0.92417 0.79886 1.19445 0.93540 0.96814 0.96079 1.20999 0.94063 1.02348 1.01144 1.21171 0.99851 0.94030 0.93624 1.21385 0.92460 1.06305 1.05215 1.19847 0.90350 0.91559 0.92044 1.83948 1.34610 1.55148 1.40259 1.21801 0.94038 1.27668 1.05460 0.87850 1.26606 0.95464 0.98929 1.01107 1.70191 1.04032 1.43179 1.38612 0.84647 0.77801 0.77848 0.75935 1.17975 1.19856 1.18146 1.20219 0.99570 1.00934 0.99422 0.90052 0.94957 0.92254 0.91749 0.89865 0.74971 0.75485 0.75736 0.92439 0.89616 0.83338 0.83211 0.86067 0.91881 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.29 71.98 0.67 -2.40 16 2 C 0.15 2.76 2.98 44.99 0.13 2.90 16 3 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 4 C 0.08 0.78 6.79 71.98 0.49 1.26 16 5 O -0.59 -6.54 12.51 -148.98 -1.86 -8.40 16 6 N -0.73 -15.15 5.06 -457.80 -2.32 -17.47 16 7 C 0.70 19.55 8.53 179.06 1.53 21.08 16 8 O -0.63 -22.56 16.01 -3.99 -0.06 -22.63 16 9 N -0.73 -18.95 5.55 -482.30 -2.68 -21.63 16 10 C 0.19 5.58 5.80 85.63 0.50 6.08 16 11 C -0.06 -1.88 5.25 -19.88 -0.10 -1.99 16 12 C -0.17 -4.76 9.70 22.30 0.22 -4.55 16 13 C -0.07 -2.16 10.04 22.25 0.22 -1.94 16 14 C -0.23 -9.67 9.17 22.39 0.21 -9.47 16 15 C 0.11 5.44 6.65 22.58 0.15 5.60 16 16 O -0.23 -13.89 9.76 -22.69 -0.22 -14.11 16 17 C -0.41 -23.78 9.49 67.92 0.64 -23.14 16 18 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 20 N -0.92 -56.71 13.67 21.61 0.30 -56.41 16 21 Si 1.02 42.40 29.55 68.60 2.03 44.42 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 C -0.18 -7.60 9.65 22.39 0.22 -7.38 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.24 7.56 -2.39 -0.02 1.23 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.40 0.88 9.12 -74.06 -0.68 0.21 16 32 H 0.41 7.03 8.40 -92.71 -0.78 6.25 16 33 H 0.41 9.21 8.48 -92.71 -0.79 8.42 16 34 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.09 2.27 8.08 -2.38 -0.02 2.25 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -78.07 345.43 -0.63 -78.71 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -1.14 Total: 32.34 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.33 Total: -14.82 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -4.70 Total: -95.51 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -2.15 Total: -45.14 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -78.07 -0.63 -78.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113629747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.013 kcal (2) G-P(sol) polarization free energy of solvation -78.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds