Wall clock time and date at job start Tue Mar 31 2020 08:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.36931 * 119.99855 * 264.28332 * 3 2 1 5 5 H 1.08002 * 119.99779 * 188.63630 * 4 3 2 6 6 C 1.38806 * 120.00067 * 8.64214 * 4 3 2 7 7 N 1.31622 * 120.00292 * 24.60478 * 6 4 3 8 8 Si 1.86805 * 120.00112 * 204.60054 * 6 4 3 9 9 H 1.48500 * 109.47009 * 85.02628 * 8 6 4 10 10 H 1.48501 * 109.47077 * 205.02438 * 8 6 4 11 11 H 1.48503 * 109.47170 * 325.02809 * 8 6 4 12 12 C 1.46505 * 120.00031 * 84.28682 * 3 2 1 13 13 C 1.53004 * 109.46980 * 270.00135 * 12 3 2 14 14 C 1.53002 * 109.46762 * 180.02562 * 13 12 3 15 15 O 1.42895 * 109.46725 * 179.97438 * 14 13 12 16 16 C 1.35899 * 116.99986 * 179.97438 * 15 14 13 17 17 C 1.38736 * 120.05628 * 179.97438 * 16 15 14 18 18 C 1.38146 * 119.94347 * 180.02562 * 17 16 15 19 19 C 1.38267 * 120.05501 * 0.02562 * 18 17 16 20 20 N 1.48007 * 119.94218 * 179.97438 * 19 18 17 21 21 O 1.21794 * 120.00275 * 359.97438 * 20 19 18 22 22 O 1.21802 * 119.99822 * 179.72791 * 20 19 18 23 23 C 1.38268 * 120.11205 * 0.25468 * 19 18 17 24 24 C 1.38146 * 120.05257 * 359.44514 * 23 19 18 25 25 H 1.09004 * 109.46622 * 60.00145 * 1 2 3 26 26 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47432 * 300.00340 * 1 2 3 28 28 H 1.08990 * 109.47723 * 239.99708 * 2 1 3 29 29 H 1.09003 * 109.47162 * 119.99319 * 2 1 3 30 30 H 0.97001 * 120.00093 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47291 * 149.99621 * 12 3 2 32 32 H 1.09005 * 109.47123 * 29.99620 * 12 3 2 33 33 H 1.08989 * 109.47437 * 60.00032 * 13 12 3 34 34 H 1.09005 * 109.46772 * 299.99700 * 13 12 3 35 35 H 1.09003 * 109.47357 * 59.99827 * 14 13 12 36 36 H 1.08996 * 109.47248 * 299.99548 * 14 13 12 37 37 H 1.08001 * 120.03085 * 359.97438 * 17 16 15 38 38 H 1.08003 * 119.97152 * 179.97438 * 18 17 16 39 39 H 1.07995 * 119.97131 * 179.72755 * 23 19 18 40 40 H 1.08001 * 120.02479 * 180.25301 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8470 2.9502 -1.1712 6 6 2.0732 1.3644 -2.3873 7 7 1.0959 0.4857 -2.4602 8 14 3.0772 1.7730 -3.9087 9 1 4.3048 0.9377 -3.9307 10 1 2.2691 1.4974 -5.1237 11 1 3.4558 3.2087 -3.8811 12 6 2.1434 2.1140 1.2625 13 6 0.8336 2.8475 1.5583 14 6 0.9645 3.6132 2.8765 15 8 -0.2586 4.2987 3.1525 16 6 -0.3106 5.0316 4.2957 17 6 -1.4671 5.7234 4.6256 18 6 -1.5172 6.4682 5.7880 19 6 -0.4159 6.5250 6.6221 20 7 -0.4722 7.3242 7.8666 21 8 -1.4878 7.9314 8.1550 22 8 0.4956 7.3710 8.6046 23 6 0.7398 5.8412 6.2926 24 6 0.7929 5.0900 5.1345 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 0.8973 0.0501 -3.3039 31 1 2.9551 2.8372 1.1840 32 1 2.3577 1.4134 2.0695 33 1 0.0219 2.1243 1.6369 34 1 0.6192 3.5481 0.7513 35 1 1.7762 4.3365 2.7975 36 1 1.1791 2.9130 3.6837 37 1 -2.3272 5.6803 3.9738 38 1 -2.4172 7.0071 6.0451 39 1 1.6001 5.8907 6.9435 40 1 1.6944 4.5528 4.8796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121067470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:04 Heat of formation + Delta-G solvation = 7.082043 kcal Electronic energy + Delta-G solvation = -22641.151466 eV Core-core repulsion = 19039.732122 eV Total energy + Delta-G solvation = -3601.419344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.31826 -40.61471 -38.07575 -36.70584 -36.43698 -33.05520 -31.84167 -31.37174 -30.55969 -29.10924 -26.55105 -25.57754 -24.00707 -23.14519 -22.29604 -21.08085 -20.28632 -19.56249 -18.79808 -18.47975 -17.67271 -16.94259 -16.36476 -16.23137 -15.32359 -15.06218 -14.27265 -14.24425 -14.20709 -13.72684 -13.45284 -13.31455 -12.80225 -12.47280 -11.98786 -11.89427 -11.70962 -11.50124 -11.41782 -11.35835 -11.30220 -11.21932 -10.88969 -10.77749 -10.47918 -10.38480 -9.91042 -9.84415 -9.68494 -9.42950 -9.03329 -8.45459 -7.01280 -5.85670 -3.17884 -0.30864 0.56858 1.17193 1.26285 2.75710 2.95516 3.33488 3.41344 3.41935 4.02077 4.11982 4.33019 4.42043 4.57027 4.84671 4.94914 4.97403 5.12907 5.23556 5.25787 5.33111 5.41770 5.57265 5.70010 5.78040 5.83482 6.04822 6.20289 6.23089 6.48402 6.58248 6.72091 6.83059 6.94622 7.03612 7.09457 7.49282 7.57808 7.69306 8.02339 8.27107 9.14706 9.76892 10.21169 11.17968 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.002429 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.861872 B =11525.847676 C =11685.489785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 N -0.594 5.594 4 C -0.254 4.254 5 H 0.074 0.926 6 C -0.001 4.001 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.157 3.843 13 C -0.145 4.145 14 C 0.054 3.946 15 O -0.297 6.297 16 C 0.196 3.804 17 C -0.157 4.157 18 C -0.014 4.014 19 C -0.097 4.097 20 N 0.039 4.961 21 O -0.171 6.171 22 O -0.172 6.172 23 C -0.010 4.010 24 C -0.213 4.213 25 H 0.090 0.910 26 H 0.019 0.981 27 H 0.013 0.987 28 H 0.088 0.912 29 H 0.003 0.997 30 H 0.253 0.747 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 7.511 14.796 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 N -0.314 5.314 4 C -0.383 4.383 5 H 0.092 0.908 6 C -0.199 4.199 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.207 1.207 12 C 0.029 3.971 13 C -0.185 4.185 14 C -0.021 4.021 15 O -0.208 6.208 16 C 0.146 3.854 17 C -0.176 4.176 18 C -0.034 4.034 19 C -0.181 4.181 20 N 0.555 4.445 21 O -0.385 6.385 22 O -0.386 6.386 23 C -0.029 4.029 24 C -0.233 4.233 25 H 0.109 0.891 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.106 0.894 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.724 6.977 13.860 15.755 hybrid contribution 0.482 0.411 -0.420 0.760 sum -2.241 7.388 13.440 15.500 Atomic orbital electron populations 1.22421 0.99241 0.98288 1.01131 1.20838 0.92532 0.84327 0.98293 1.44281 1.75503 1.10149 1.01507 1.19268 1.31675 1.03842 0.83512 0.90810 1.24746 0.97802 0.99916 0.97425 1.70153 1.27099 1.31728 1.25053 0.86356 0.80271 0.77880 0.82647 1.21528 1.21910 1.20739 1.20669 0.93168 0.94116 0.89160 1.22709 1.03365 0.99584 0.92884 1.23358 0.83556 0.94918 1.00301 1.86275 1.39875 1.58830 1.35774 1.19551 0.93184 0.87417 0.85206 1.20507 0.98495 1.00399 0.98243 1.20816 0.97115 0.94442 0.90984 1.20939 0.99645 1.07142 0.90342 1.43527 0.99944 0.99171 1.01871 1.94523 1.21448 1.43890 1.78667 1.94527 1.27806 1.68437 1.47833 1.20815 0.96073 0.90491 0.95505 1.21379 1.00358 1.05440 0.96108 0.89102 0.96175 0.96787 0.89363 0.97879 0.93690 0.93465 0.94151 0.90887 0.90746 0.91578 0.91707 0.82684 0.82472 0.82801 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.58 37.16 0.36 -2.97 16 2 C 0.17 3.77 5.64 -4.04 -0.02 3.74 16 3 N -0.59 -13.63 2.54 -173.24 -0.44 -14.07 16 4 C -0.25 -6.48 9.70 -15.06 -0.15 -6.63 16 5 H 0.07 1.85 7.93 -52.49 -0.42 1.43 16 6 C 0.00 -0.04 4.91 -17.43 -0.09 -0.12 16 7 N -0.89 -24.04 8.54 55.49 0.47 -23.57 16 8 Si 0.90 20.77 29.62 -169.99 -5.03 15.73 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.16 2.81 5.71 -4.04 -0.02 2.78 16 13 C -0.14 -2.33 5.79 -26.73 -0.15 -2.49 16 14 C 0.05 0.63 4.74 37.16 0.18 0.81 16 15 O -0.30 -3.68 10.14 -19.42 -0.20 -3.88 16 16 C 0.20 2.02 6.69 -39.22 -0.26 1.76 16 17 C -0.16 -1.42 9.99 -39.43 -0.39 -1.81 16 18 C -0.01 -0.13 9.55 -39.60 -0.38 -0.51 16 19 C -0.10 -1.01 6.85 -79.93 -0.55 -1.56 16 20 N 0.04 0.48 4.45 33.97 0.15 0.63 16 21 O -0.17 -2.23 18.44 -29.46 -0.54 -2.77 16 22 O -0.17 -2.26 18.44 -29.46 -0.54 -2.81 16 23 C -0.01 -0.09 9.55 -39.60 -0.38 -0.47 16 24 C -0.21 -1.90 9.04 -39.43 -0.36 -2.26 16 25 H 0.09 2.29 6.28 -51.93 -0.33 1.96 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.01 0.27 5.98 -51.93 -0.31 -0.04 16 28 H 0.09 2.26 5.87 -51.93 -0.31 1.96 16 29 H 0.00 0.06 7.97 -51.93 -0.41 -0.35 16 30 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.04 0.65 7.95 -51.93 -0.41 0.24 16 33 H 0.07 1.28 5.93 -51.94 -0.31 0.97 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 36 H 0.06 0.65 7.66 -51.93 -0.40 0.26 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.16 1.13 7.61 -52.48 -0.40 0.73 16 39 H 0.15 1.16 7.60 -52.49 -0.40 0.76 16 40 H 0.15 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -28.33 336.66 -8.51 -36.84 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.24 Total: -1.48 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.22 Total: -9.71 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.19 Total: -37.00 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.28 Total: -9.46 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.33 -8.51 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121067470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.925 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds