Wall clock time and date at job start Tue Mar 31 2020 08:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.36931 * 119.99855 * 264.28332 * 3 2 1 5 5 H 1.08002 * 119.99779 * 188.63630 * 4 3 2 6 6 C 1.38806 * 120.00067 * 8.64214 * 4 3 2 7 7 N 1.31622 * 120.00292 * 24.60478 * 6 4 3 8 8 Si 1.86805 * 120.00112 * 204.60054 * 6 4 3 9 9 H 1.48500 * 109.47009 * 85.02628 * 8 6 4 10 10 H 1.48501 * 109.47077 * 205.02438 * 8 6 4 11 11 H 1.48503 * 109.47170 * 325.02809 * 8 6 4 12 12 C 1.46505 * 120.00031 * 84.28682 * 3 2 1 13 13 C 1.53004 * 109.46980 * 270.00135 * 12 3 2 14 14 C 1.53002 * 109.46762 * 180.02562 * 13 12 3 15 15 O 1.42895 * 109.46725 * 179.97438 * 14 13 12 16 16 C 1.35899 * 116.99986 * 179.97438 * 15 14 13 17 17 C 1.38736 * 120.05628 * 179.97438 * 16 15 14 18 18 C 1.38146 * 119.94347 * 180.02562 * 17 16 15 19 19 C 1.38267 * 120.05501 * 0.02562 * 18 17 16 20 20 N 1.48007 * 119.94218 * 179.97438 * 19 18 17 21 21 O 1.21794 * 120.00275 * 359.97438 * 20 19 18 22 22 O 1.21802 * 119.99822 * 179.72791 * 20 19 18 23 23 C 1.38268 * 120.11205 * 0.25468 * 19 18 17 24 24 C 1.38146 * 120.05257 * 359.44514 * 23 19 18 25 25 H 1.09004 * 109.46622 * 60.00145 * 1 2 3 26 26 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47432 * 300.00340 * 1 2 3 28 28 H 1.08990 * 109.47723 * 239.99708 * 2 1 3 29 29 H 1.09003 * 109.47162 * 119.99319 * 2 1 3 30 30 H 0.97001 * 120.00093 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47291 * 149.99621 * 12 3 2 32 32 H 1.09005 * 109.47123 * 29.99620 * 12 3 2 33 33 H 1.08989 * 109.47437 * 60.00032 * 13 12 3 34 34 H 1.09005 * 109.46772 * 299.99700 * 13 12 3 35 35 H 1.09003 * 109.47357 * 59.99827 * 14 13 12 36 36 H 1.08996 * 109.47248 * 299.99548 * 14 13 12 37 37 H 1.08001 * 120.03085 * 359.97438 * 17 16 15 38 38 H 1.08003 * 119.97152 * 179.97438 * 18 17 16 39 39 H 1.07995 * 119.97131 * 179.72755 * 23 19 18 40 40 H 1.08001 * 120.02479 * 180.25301 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8470 2.9502 -1.1712 6 6 2.0732 1.3644 -2.3873 7 7 1.0959 0.4857 -2.4602 8 14 3.0772 1.7730 -3.9087 9 1 4.3048 0.9377 -3.9307 10 1 2.2691 1.4974 -5.1237 11 1 3.4558 3.2087 -3.8811 12 6 2.1434 2.1140 1.2625 13 6 0.8336 2.8475 1.5583 14 6 0.9645 3.6132 2.8765 15 8 -0.2586 4.2987 3.1525 16 6 -0.3106 5.0316 4.2957 17 6 -1.4671 5.7234 4.6256 18 6 -1.5172 6.4682 5.7880 19 6 -0.4159 6.5250 6.6221 20 7 -0.4722 7.3242 7.8666 21 8 -1.4878 7.9314 8.1550 22 8 0.4956 7.3710 8.6046 23 6 0.7398 5.8412 6.2926 24 6 0.7929 5.0900 5.1345 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 0.8973 0.0501 -3.3039 31 1 2.9551 2.8372 1.1840 32 1 2.3577 1.4134 2.0695 33 1 0.0219 2.1243 1.6369 34 1 0.6192 3.5481 0.7513 35 1 1.7762 4.3365 2.7975 36 1 1.1791 2.9130 3.6837 37 1 -2.3272 5.6803 3.9738 38 1 -2.4172 7.0071 6.0451 39 1 1.6001 5.8907 6.9435 40 1 1.6944 4.5528 4.8796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121067470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:04 Heat of formation + Delta-G solvation = -6.295045 kcal Electronic energy + Delta-G solvation = -22641.731540 eV Core-core repulsion = 19039.732122 eV Total energy + Delta-G solvation = -3601.999418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.21723 -41.43071 -38.96337 -38.05592 -37.64979 -34.48408 -32.79682 -32.42524 -31.91679 -30.75592 -27.64754 -26.78895 -25.42631 -24.18742 -23.24624 -22.41789 -21.87170 -20.37842 -19.71858 -19.37538 -18.67596 -18.57941 -17.31845 -17.18422 -16.79982 -16.00903 -15.72251 -15.51389 -14.92744 -14.88495 -14.67773 -14.49270 -14.09254 -13.76758 -13.60785 -13.26072 -12.94762 -12.83297 -12.71873 -12.60349 -12.33590 -12.31034 -12.28863 -12.27436 -11.99716 -11.95001 -11.64937 -11.36391 -11.15281 -10.52206 -10.35157 -9.83000 -8.84593 -7.80027 -5.11816 -1.18636 -0.10533 0.31315 0.42135 1.48585 1.52429 1.57823 1.89807 2.22948 2.55551 3.29650 3.32601 3.45885 3.59153 3.66096 3.87117 3.98474 4.11546 4.20372 4.37876 4.41823 4.54915 4.63040 4.70036 4.73261 4.77494 4.81865 4.92846 5.02531 5.08656 5.19870 5.24927 5.28828 5.35324 5.53841 5.63999 5.82762 6.10072 6.17448 6.37949 6.51567 7.22997 7.95260 8.33990 9.21690 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.002429 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.861872 B =11525.847676 C =11685.489785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.256 4.256 5 H 0.074 0.926 6 C -0.052 4.052 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.290 1.290 10 H -0.302 1.302 11 H -0.275 1.275 12 C 0.153 3.847 13 C -0.132 4.132 14 C 0.061 3.939 15 O -0.315 6.315 16 C 0.184 3.816 17 C -0.156 4.156 18 C -0.010 4.010 19 C -0.109 4.109 20 N 0.040 4.960 21 O -0.188 6.188 22 O -0.189 6.189 23 C -0.008 4.008 24 C -0.206 4.206 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.245 0.755 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 7.939 16.148 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.041 3.959 3 N -0.333 5.333 4 C -0.386 4.386 5 H 0.092 0.908 6 C -0.247 4.247 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.217 1.217 10 H -0.229 1.229 11 H -0.200 1.200 12 C 0.026 3.974 13 C -0.172 4.172 14 C -0.014 4.014 15 O -0.227 6.227 16 C 0.135 3.865 17 C -0.175 4.175 18 C -0.029 4.029 19 C -0.193 4.193 20 N 0.552 4.448 21 O -0.400 6.400 22 O -0.400 6.400 23 C -0.027 4.027 24 C -0.225 4.225 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.186 0.814 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.040 7.443 15.265 17.105 hybrid contribution 0.259 0.297 -0.781 0.874 sum -1.781 7.740 14.484 16.519 Atomic orbital electron populations 1.22212 0.98818 0.98642 1.00034 1.20718 0.92860 0.84565 0.97774 1.44455 1.75810 1.10615 1.02466 1.19519 1.30748 1.03625 0.84678 0.90767 1.25357 0.98864 1.00801 0.99714 1.70315 1.28211 1.32984 1.24879 0.85490 0.78664 0.77783 0.79770 1.21744 1.22880 1.20014 1.20855 0.94120 0.94723 0.87689 1.22303 1.01548 0.98839 0.94525 1.23166 0.83928 0.95700 0.98566 1.86203 1.40038 1.59527 1.36941 1.19733 0.94159 0.87670 0.84889 1.20680 0.98756 0.99841 0.98252 1.20988 0.97306 0.94147 0.90503 1.21171 1.00864 1.07569 0.89722 1.43811 0.99589 0.99083 1.02352 1.94510 1.21630 1.44635 1.79217 1.94512 1.27928 1.68943 1.48655 1.21023 0.96096 0.89856 0.95707 1.21566 1.00606 1.04976 0.95367 0.92680 0.95070 0.95220 0.92689 0.95414 0.94563 0.92502 0.91617 0.92530 0.93790 0.89639 0.89106 0.81373 0.81018 0.81307 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 9.58 71.98 0.69 -5.30 16 2 C 0.17 7.47 5.64 86.38 0.49 7.96 16 3 N -0.61 -27.57 2.54 -702.00 -1.78 -29.35 16 4 C -0.26 -13.00 9.70 84.03 0.82 -12.18 16 5 H 0.07 3.67 7.93 -2.91 -0.02 3.65 16 6 C -0.05 -2.76 4.91 84.86 0.42 -2.35 16 7 N -0.92 -50.38 8.54 21.65 0.18 -50.20 16 8 Si 0.95 43.18 29.62 68.60 2.03 45.21 16 9 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.15 5.09 5.71 86.38 0.49 5.58 16 13 C -0.13 -4.01 5.79 30.60 0.18 -3.83 16 14 C 0.06 1.24 4.74 71.98 0.34 1.59 16 15 O -0.32 -7.03 10.14 -92.41 -0.94 -7.96 16 16 C 0.18 3.29 6.69 22.51 0.15 3.44 16 17 C -0.16 -2.46 9.99 22.37 0.22 -2.23 16 18 C -0.01 -0.16 9.55 22.25 0.21 0.05 16 19 C -0.11 -2.06 6.85 36.39 0.25 -1.81 16 20 N 0.04 0.95 4.45 -46.44 -0.21 0.74 16 21 O -0.19 -4.77 18.44 18.89 0.35 -4.42 16 22 O -0.19 -4.79 18.44 18.88 0.35 -4.44 16 23 C -0.01 -0.12 9.55 22.25 0.21 0.09 16 24 C -0.21 -2.97 9.04 22.37 0.20 -2.77 16 25 H 0.05 2.81 6.28 -2.38 -0.01 2.80 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.03 1.15 5.98 -2.39 -0.01 1.14 16 28 H 0.05 2.85 5.87 -2.39 -0.01 2.84 16 29 H 0.03 1.09 7.97 -2.39 -0.02 1.08 16 30 H 0.24 13.31 8.31 -92.71 -0.77 12.54 16 31 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 32 H 0.07 1.87 7.95 -2.38 -0.02 1.85 16 33 H 0.06 1.90 5.93 -2.39 -0.01 1.88 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16 36 H 0.09 1.42 7.66 -2.39 -0.02 1.40 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.17 2.14 7.61 -2.91 -0.02 2.12 16 39 H 0.17 2.06 7.60 -2.91 -0.02 2.04 16 40 H 0.18 1.72 6.30 -2.91 -0.02 1.70 16 Total: -1.00 -61.74 336.66 5.71 -56.03 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.05 Total: 6.15 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 4.67 Total: -11.77 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.80 Total: -78.80 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.24 Total: -16.82 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -61.74 5.71 -56.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121067470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.733 kcal (2) G-P(sol) polarization free energy of solvation -61.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds