Wall clock time and date at job start Tue Mar 31 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46794 * 2 1 4 4 C 1.50693 * 109.47121 * 120.00402 * 2 1 3 5 5 H 1.08006 * 120.00190 * 114.32419 * 4 2 1 6 6 C 1.37878 * 120.00181 * 294.31489 * 4 2 1 7 7 N 1.31513 * 120.00242 * 155.05315 * 6 4 2 8 8 Si 1.86798 * 120.00129 * 335.32955 * 6 4 2 9 9 H 1.48490 * 109.47603 * 179.72508 * 8 6 4 10 10 H 1.48508 * 109.46934 * 299.72526 * 8 6 4 11 11 H 1.48505 * 109.47050 * 59.71999 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3 13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1 14 14 C 1.46902 * 111.00334 * 60.00000 * 12 2 1 15 15 C 1.52998 * 109.47473 * 189.99922 * 14 12 2 16 16 O 1.42902 * 109.47006 * 64.99714 * 15 14 12 17 17 C 1.35901 * 116.99807 * 180.02562 * 16 15 14 18 18 C 1.38754 * 120.05778 * 359.72486 * 17 16 15 19 19 C 1.38121 * 119.94585 * 179.79165 * 18 17 16 20 20 C 1.38290 * 120.05364 * 0.48392 * 19 18 17 21 21 C 1.38244 * 120.11228 * 359.74759 * 20 19 18 22 22 N 1.48008 * 119.97187 * 180.02562 * 21 20 19 23 23 O 1.21798 * 119.99656 * 180.02562 * 22 21 20 24 24 O 1.21799 * 120.00161 * 0.02562 * 22 21 20 25 25 C 1.38169 * 120.05390 * 0.02562 * 21 20 19 26 26 H 1.09001 * 109.47132 * 171.91475 * 1 2 3 27 27 H 1.09002 * 109.46962 * 291.91327 * 1 2 3 28 28 H 1.08998 * 109.47417 * 51.91130 * 1 2 3 29 29 H 0.97006 * 119.99437 * 355.22693 * 7 6 4 30 30 H 1.09001 * 109.46948 * 60.00177 * 13 12 2 31 31 H 1.08994 * 109.47451 * 180.02562 * 13 12 2 32 32 H 1.08997 * 109.46706 * 300.00286 * 13 12 2 33 33 H 1.09002 * 109.46799 * 309.99704 * 14 12 2 34 34 H 1.08999 * 109.47261 * 69.99244 * 14 12 2 35 35 H 1.09000 * 109.47304 * 184.99622 * 15 14 12 36 36 H 1.08993 * 109.47079 * 304.99896 * 15 14 12 37 37 H 1.08003 * 120.02604 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.97525 * 180.23035 * 19 18 17 39 39 H 1.07999 * 119.94463 * 179.76972 * 20 19 18 40 40 H 1.08007 * 120.02479 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5756 -1.6390 1.1339 6 6 1.7986 -0.1751 2.4793 7 7 1.7729 -0.9578 3.5359 8 14 1.5107 1.6607 2.6697 9 1 1.2783 1.9795 4.1012 10 1 2.7029 2.4016 2.1847 11 1 0.3221 2.0604 1.8742 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0262 -2.4211 15 6 1.8625 -0.9041 -3.6342 16 8 1.1116 -2.1171 -3.5515 17 6 1.2763 -3.0145 -4.5587 18 6 2.1386 -2.7310 -5.6081 19 6 2.3075 -3.6466 -6.6283 20 6 1.6105 -4.8408 -6.6096 21 6 0.7471 -5.1237 -5.5676 22 7 0.0031 -6.4030 -5.5504 23 8 -0.7581 -6.6525 -4.6328 24 8 0.1519 -7.2063 -6.4537 25 6 0.5782 -4.2130 -4.5423 26 1 -0.3633 -1.0175 -0.1445 27 1 -0.3633 0.3835 0.9534 28 1 -0.3634 0.6339 -0.8088 29 1 1.8492 -1.9189 3.4294 30 1 3.8029 -1.3531 -0.3069 31 1 3.8209 -1.3107 -2.0865 32 1 3.9185 0.2052 -1.1592 33 1 0.4721 0.1325 -2.3563 34 1 2.0517 0.9348 -2.5280 35 1 1.5940 -0.3721 -4.5469 36 1 2.9273 -1.1363 -3.6489 37 1 2.6795 -1.7963 -5.6257 38 1 2.9814 -3.4280 -7.4435 39 1 1.7411 -5.5539 -7.4101 40 1 -0.0968 -4.4343 -3.7287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129650357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:05 Heat of formation + Delta-G solvation = -1.013940 kcal Electronic energy + Delta-G solvation = -23258.231756 eV Core-core repulsion = 19656.461344 eV Total energy + Delta-G solvation = -3601.770412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32518 -40.52815 -38.22783 -36.96906 -36.68762 -33.05070 -32.22458 -31.23735 -30.14993 -28.96028 -26.88432 -25.41712 -24.31790 -23.25512 -22.80280 -21.36306 -19.80091 -19.27758 -18.79793 -17.67228 -17.55196 -17.31668 -16.69176 -16.36111 -16.15455 -14.99241 -14.58766 -14.29897 -13.99546 -13.76050 -13.30296 -13.22150 -12.77704 -12.60833 -12.23150 -12.06130 -11.89653 -11.68808 -11.56413 -11.32891 -11.26755 -11.26347 -11.08399 -10.83656 -10.44410 -10.30511 -10.15836 -9.94763 -9.86483 -8.95728 -8.78200 -8.25643 -7.46603 -6.51363 -4.06787 -0.38498 0.72856 1.16138 1.17666 2.90030 3.01149 3.34642 3.37955 3.56158 4.10684 4.33574 4.40501 4.45792 4.47771 4.53840 4.66711 4.86629 5.07257 5.11180 5.15736 5.26120 5.44439 5.59436 5.61340 5.66515 5.79507 5.88088 5.92718 6.12453 6.23519 6.36517 6.51355 6.55988 6.77244 6.87037 7.04557 7.27989 7.49258 7.67664 7.89862 8.27273 8.39437 8.94536 9.57446 10.87004 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.003230 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.817261 B = 8667.248139 C = 9345.821297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.193 3.807 3 H -0.011 1.011 4 C -0.601 4.601 5 H 0.065 0.935 6 C 0.038 3.962 7 N -0.895 5.895 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.523 5.523 13 C 0.036 3.964 14 C 0.044 3.956 15 C 0.062 3.938 16 O -0.278 6.278 17 C 0.148 3.852 18 C -0.167 4.167 19 C -0.076 4.076 20 C -0.105 4.105 21 C -0.004 4.004 22 N 0.028 4.972 23 O -0.152 6.152 24 O -0.161 6.161 25 C -0.094 4.094 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.271 0.729 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -0.815 -21.807 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.085 3.915 3 H 0.006 0.994 4 C -0.638 4.638 5 H 0.083 0.917 6 C -0.169 4.169 7 N -0.528 5.528 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.205 1.205 12 N -0.247 5.247 13 C -0.112 4.112 14 C -0.085 4.085 15 C -0.013 4.013 16 O -0.189 6.189 17 C 0.100 3.900 18 C -0.186 4.186 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.087 4.087 22 N 0.548 4.452 23 O -0.370 6.370 24 O -0.376 6.376 25 C -0.114 4.114 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.349 0.516 -20.470 20.521 hybrid contribution 0.600 -0.582 -1.267 1.517 sum 1.948 -0.066 -21.736 21.823 Atomic orbital electron populations 1.22169 0.98108 1.00414 0.99069 1.19561 0.91880 0.91750 0.88260 0.99380 1.21866 1.40948 1.10712 0.90299 0.91705 1.25614 0.93452 1.05622 0.92168 1.70839 1.43391 1.06286 1.32253 0.84167 0.77001 0.76398 0.76202 1.20979 1.21279 1.20499 1.62055 1.09585 1.51896 1.01199 1.22263 0.88302 0.99224 1.01432 1.22235 1.02598 0.93539 0.90102 1.23173 0.95573 0.83167 0.99359 1.86357 1.63614 1.27809 1.41151 1.18742 0.93304 0.89772 0.88171 1.21779 1.00133 1.01904 0.94745 1.20944 0.98196 0.91838 0.98468 1.20898 0.95254 0.98734 0.97582 1.20714 1.01218 0.86428 1.00332 1.43573 0.99667 1.02199 0.99746 1.94583 1.32237 1.82247 1.27888 1.94520 1.69938 1.43206 1.29950 1.20153 1.01209 0.91054 0.98985 0.92703 0.92840 0.96229 0.91908 0.90036 0.93999 0.96807 0.89403 0.93313 0.91909 0.91500 0.83664 0.83445 0.83055 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.47 37.16 0.31 -2.72 16 2 C 0.19 4.43 1.66 -68.87 -0.11 4.31 16 3 H -0.01 -0.26 6.70 -51.93 -0.35 -0.61 16 4 C -0.60 -16.34 7.98 -34.44 -0.27 -16.61 16 5 H 0.06 1.92 6.88 -52.48 -0.36 1.56 16 6 C 0.04 1.07 5.15 -17.82 -0.09 0.98 16 7 N -0.90 -26.89 13.70 55.43 0.76 -26.13 16 8 Si 1.03 24.46 26.49 -169.99 -4.50 19.95 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.14 6.29 56.52 0.36 -5.78 16 12 N -0.52 -10.29 4.57 -236.29 -1.08 -11.37 16 13 C 0.04 0.66 9.05 60.07 0.54 1.20 16 14 C 0.04 0.66 5.16 -3.82 -0.02 0.64 16 15 C 0.06 0.73 4.80 37.16 0.18 0.91 16 16 O -0.28 -3.88 10.08 -19.43 -0.20 -4.08 16 17 C 0.15 1.74 6.69 -39.22 -0.26 1.48 16 18 C -0.17 -1.43 9.04 -39.43 -0.36 -1.78 16 19 C -0.08 -0.54 10.04 -39.61 -0.40 -0.94 16 20 C -0.11 -0.94 9.55 -39.56 -0.38 -1.32 16 21 C 0.00 -0.05 6.85 -79.98 -0.55 -0.60 16 22 N 0.03 0.38 4.45 33.95 0.15 0.53 16 23 O -0.15 -2.29 18.45 -29.46 -0.54 -2.83 16 24 O -0.16 -2.20 18.44 -29.46 -0.54 -2.74 16 25 C -0.09 -1.17 9.49 -39.43 -0.37 -1.54 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.22 5.67 -51.93 -0.29 0.92 16 28 H 0.02 0.35 6.64 -51.93 -0.34 0.01 16 29 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 30 H 0.08 1.70 6.34 -51.93 -0.33 1.37 16 31 H 0.04 0.63 6.20 -51.93 -0.32 0.31 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 1.35 6.00 -51.93 -0.31 1.04 16 34 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 36 H 0.07 0.72 5.79 -51.93 -0.30 0.42 16 37 H 0.15 0.92 6.30 -52.48 -0.33 0.59 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.15 1.10 7.60 -52.49 -0.40 0.70 16 40 H 0.16 2.10 7.61 -52.48 -0.40 1.70 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -31.19 331.21 -7.77 -38.96 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.03 Total: -1.30 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -1.78 Total: -15.99 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.17 Total: -36.97 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.28 Total: -9.65 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.50 Total: 19.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.19 -7.77 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129650357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.950 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds