Wall clock time and date at job start Tue Mar 31 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46794 * 2 1 4 4 C 1.50693 * 109.47121 * 120.00402 * 2 1 3 5 5 H 1.08006 * 120.00190 * 114.32419 * 4 2 1 6 6 C 1.37878 * 120.00181 * 294.31489 * 4 2 1 7 7 N 1.31513 * 120.00242 * 155.05315 * 6 4 2 8 8 Si 1.86798 * 120.00129 * 335.32955 * 6 4 2 9 9 H 1.48490 * 109.47603 * 179.72508 * 8 6 4 10 10 H 1.48508 * 109.46934 * 299.72526 * 8 6 4 11 11 H 1.48505 * 109.47050 * 59.71999 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3 13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1 14 14 C 1.46902 * 111.00334 * 60.00000 * 12 2 1 15 15 C 1.52998 * 109.47473 * 189.99922 * 14 12 2 16 16 O 1.42902 * 109.47006 * 64.99714 * 15 14 12 17 17 C 1.35901 * 116.99807 * 180.02562 * 16 15 14 18 18 C 1.38754 * 120.05778 * 359.72486 * 17 16 15 19 19 C 1.38121 * 119.94585 * 179.79165 * 18 17 16 20 20 C 1.38290 * 120.05364 * 0.48392 * 19 18 17 21 21 C 1.38244 * 120.11228 * 359.74759 * 20 19 18 22 22 N 1.48008 * 119.97187 * 180.02562 * 21 20 19 23 23 O 1.21798 * 119.99656 * 180.02562 * 22 21 20 24 24 O 1.21799 * 120.00161 * 0.02562 * 22 21 20 25 25 C 1.38169 * 120.05390 * 0.02562 * 21 20 19 26 26 H 1.09001 * 109.47132 * 171.91475 * 1 2 3 27 27 H 1.09002 * 109.46962 * 291.91327 * 1 2 3 28 28 H 1.08998 * 109.47417 * 51.91130 * 1 2 3 29 29 H 0.97006 * 119.99437 * 355.22693 * 7 6 4 30 30 H 1.09001 * 109.46948 * 60.00177 * 13 12 2 31 31 H 1.08994 * 109.47451 * 180.02562 * 13 12 2 32 32 H 1.08997 * 109.46706 * 300.00286 * 13 12 2 33 33 H 1.09002 * 109.46799 * 309.99704 * 14 12 2 34 34 H 1.08999 * 109.47261 * 69.99244 * 14 12 2 35 35 H 1.09000 * 109.47304 * 184.99622 * 15 14 12 36 36 H 1.08993 * 109.47079 * 304.99896 * 15 14 12 37 37 H 1.08003 * 120.02604 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.97525 * 180.23035 * 19 18 17 39 39 H 1.07999 * 119.94463 * 179.76972 * 20 19 18 40 40 H 1.08007 * 120.02479 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5756 -1.6390 1.1339 6 6 1.7986 -0.1751 2.4793 7 7 1.7729 -0.9578 3.5359 8 14 1.5107 1.6607 2.6697 9 1 1.2783 1.9795 4.1012 10 1 2.7029 2.4016 2.1847 11 1 0.3221 2.0604 1.8742 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0262 -2.4211 15 6 1.8625 -0.9041 -3.6342 16 8 1.1116 -2.1171 -3.5515 17 6 1.2763 -3.0145 -4.5587 18 6 2.1386 -2.7310 -5.6081 19 6 2.3075 -3.6466 -6.6283 20 6 1.6105 -4.8408 -6.6096 21 6 0.7471 -5.1237 -5.5676 22 7 0.0031 -6.4030 -5.5504 23 8 -0.7581 -6.6525 -4.6328 24 8 0.1519 -7.2063 -6.4537 25 6 0.5782 -4.2130 -4.5423 26 1 -0.3633 -1.0175 -0.1445 27 1 -0.3633 0.3835 0.9534 28 1 -0.3634 0.6339 -0.8088 29 1 1.8492 -1.9189 3.4294 30 1 3.8029 -1.3531 -0.3069 31 1 3.8209 -1.3107 -2.0865 32 1 3.9185 0.2052 -1.1592 33 1 0.4721 0.1325 -2.3563 34 1 2.0517 0.9348 -2.5280 35 1 1.5940 -0.3721 -4.5469 36 1 2.9273 -1.1363 -3.6489 37 1 2.6795 -1.7963 -5.6257 38 1 2.9814 -3.4280 -7.4435 39 1 1.7411 -5.5539 -7.4101 40 1 -0.0968 -4.4343 -3.7287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129650357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:05 Heat of formation + Delta-G solvation = -21.839941 kcal Electronic energy + Delta-G solvation = -23259.134840 eV Core-core repulsion = 19656.461344 eV Total energy + Delta-G solvation = -3602.673496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.33591 -41.37488 -39.32455 -38.24702 -37.75427 -34.97737 -33.00290 -32.53843 -31.49912 -30.14534 -27.86086 -27.00148 -26.01807 -24.05648 -23.86990 -22.57362 -21.13693 -20.50250 -19.82690 -19.55643 -18.70072 -18.22109 -17.56271 -17.37509 -17.02783 -16.46285 -15.73771 -15.49342 -15.32046 -15.11127 -14.53488 -14.35273 -14.18662 -13.75504 -13.42296 -13.38324 -13.26617 -12.94277 -12.73932 -12.73069 -12.54548 -12.37855 -12.33126 -12.23806 -12.08431 -11.92267 -11.66549 -11.57198 -10.98010 -10.66756 -10.38592 -9.59283 -8.97878 -8.74769 -6.29938 -1.32599 0.00163 0.24595 0.26286 1.45125 1.50792 1.70588 2.05461 2.27005 2.49931 3.00321 3.19753 3.42315 3.61432 3.66328 3.78370 3.92644 4.02442 4.14029 4.23997 4.37544 4.44437 4.54484 4.60305 4.68144 4.71412 4.77427 4.84801 4.88404 4.90016 4.98362 5.03603 5.13829 5.18273 5.35485 5.52452 5.86853 6.08027 6.21011 6.24885 6.40687 6.62671 6.74889 7.43961 8.61721 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.003230 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.817261 B = 8667.248139 C = 9345.821297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.193 3.807 3 H -0.004 1.004 4 C -0.599 4.599 5 H 0.022 0.978 6 C -0.015 4.015 7 N -0.932 5.932 8 Si 1.077 2.923 9 H -0.290 1.290 10 H -0.266 1.266 11 H -0.248 1.248 12 N -0.546 5.546 13 C 0.042 3.958 14 C 0.040 3.960 15 C 0.063 3.937 16 O -0.314 6.314 17 C 0.131 3.869 18 C -0.148 4.148 19 C -0.058 4.058 20 C -0.095 4.095 21 C -0.022 4.022 22 N 0.029 4.971 23 O -0.213 6.213 24 O -0.142 6.142 25 C -0.121 4.121 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.252 0.748 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.179 0.821 38 H 0.197 0.803 39 H 0.173 0.827 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 1.952 -26.022 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 H 0.013 0.987 4 C -0.637 4.637 5 H 0.040 0.960 6 C -0.214 4.214 7 N -0.567 5.567 8 Si 0.899 3.101 9 H -0.216 1.216 10 H -0.191 1.191 11 H -0.173 1.173 12 N -0.271 5.271 13 C -0.106 4.106 14 C -0.088 4.088 15 C -0.011 4.011 16 O -0.227 6.227 17 C 0.084 3.916 18 C -0.167 4.167 19 C -0.076 4.076 20 C -0.114 4.114 21 C -0.105 4.105 22 N 0.544 4.456 23 O -0.417 6.417 24 O -0.365 6.365 25 C -0.141 4.141 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.196 0.804 38 H 0.214 0.786 39 H 0.191 0.809 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.703 3.280 -24.632 24.996 hybrid contribution 0.295 -1.524 -0.159 1.561 sum 2.997 1.756 -24.791 25.033 Atomic orbital electron populations 1.22041 0.97154 1.00127 0.99805 1.19384 0.92479 0.91495 0.88115 0.98697 1.22070 1.39684 1.09187 0.92724 0.96002 1.27072 0.92853 1.09480 0.92013 1.70976 1.46897 1.05369 1.33434 0.83625 0.78894 0.71220 0.76404 1.21640 1.19066 1.17270 1.61898 1.10362 1.52874 1.01935 1.22175 0.87754 0.99494 1.01213 1.22373 1.02322 0.95096 0.89003 1.23257 0.96074 0.82503 0.99272 1.86299 1.64695 1.28957 1.42710 1.18844 0.94574 0.89147 0.89047 1.22194 0.98164 1.03168 0.93151 1.21509 0.97264 0.89981 0.98837 1.21364 0.93592 0.99866 0.96579 1.20877 1.02540 0.85337 1.01741 1.43923 0.99475 1.02923 0.99250 1.94592 1.34621 1.83382 1.29064 1.94463 1.68986 1.43730 1.29364 1.20073 1.02337 0.92528 0.99194 0.94512 0.94200 0.92348 0.93880 0.94249 0.90469 0.95876 0.89980 0.90987 0.87636 0.90239 0.80373 0.78611 0.80923 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.47 71.98 0.61 -5.05 16 2 C 0.19 8.75 1.66 44.17 0.07 8.83 16 3 H 0.00 -0.19 6.70 -2.39 -0.02 -0.21 16 4 C -0.60 -33.69 7.98 25.60 0.20 -33.49 16 5 H 0.02 1.38 6.88 -2.91 -0.02 1.36 16 6 C -0.01 -0.85 5.15 84.65 0.44 -0.42 16 7 N -0.93 -58.58 13.70 21.45 0.29 -58.29 16 8 Si 1.08 48.88 26.49 68.60 1.82 50.70 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.25 -10.01 6.29 99.48 0.63 -9.39 16 12 N -0.55 -20.89 4.57 -901.49 -4.12 -25.01 16 13 C 0.04 1.47 9.05 127.69 1.16 2.63 16 14 C 0.04 1.06 5.16 86.30 0.45 1.51 16 15 C 0.06 1.22 4.80 71.98 0.35 1.57 16 16 O -0.31 -8.28 10.08 -92.44 -0.93 -9.21 16 17 C 0.13 2.84 6.69 22.51 0.15 2.99 16 18 C -0.15 -1.81 9.04 22.37 0.20 -1.61 16 19 C -0.06 -0.50 10.04 22.25 0.22 -0.28 16 20 C -0.09 -1.36 9.55 22.28 0.21 -1.15 16 21 C -0.02 -0.51 6.85 36.36 0.25 -0.26 16 22 N 0.03 0.81 4.45 -46.50 -0.21 0.61 16 23 O -0.21 -7.01 18.45 18.89 0.35 -6.66 16 24 O -0.14 -3.80 18.44 18.89 0.35 -3.45 16 25 C -0.12 -3.09 9.49 22.37 0.21 -2.88 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.77 5.67 -2.39 -0.01 1.75 16 28 H 0.06 2.00 6.64 -2.39 -0.02 1.99 16 29 H 0.25 16.27 8.73 -92.70 -0.81 15.46 16 30 H 0.04 1.69 6.34 -2.39 -0.02 1.68 16 31 H 0.08 2.13 6.20 -2.39 -0.01 2.11 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.08 2.27 6.00 -2.39 -0.01 2.26 16 34 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 35 H 0.11 1.16 7.65 -2.39 -0.02 1.14 16 36 H 0.08 1.31 5.79 -2.39 -0.01 1.30 16 37 H 0.18 1.01 6.30 -2.91 -0.02 0.99 16 38 H 0.20 -0.07 8.06 -2.91 -0.02 -0.09 16 39 H 0.17 1.76 7.60 -2.91 -0.02 1.73 16 40 H 0.14 4.02 7.61 -2.91 -0.02 4.00 16 Total: -1.00 -74.99 331.21 3.01 -71.98 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.94 Total: 6.95 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.52 Total: -27.61 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -4.03 Total: -82.69 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.24 Total: -19.32 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.82 Total: 50.70 kcal Total: -74.99 3.01 -71.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129650357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.135 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds