Wall clock time and date at job start Tue Mar 31 2020 07:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47218 * 2 1 4 4 C 1.50706 * 109.46810 * 240.00380 * 2 1 3 5 5 H 1.08004 * 119.99703 * 240.00002 * 4 2 1 6 6 C 1.37875 * 120.00168 * 60.00361 * 4 2 1 7 7 N 1.31517 * 119.99716 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47580 * 59.99786 * 8 6 4 10 10 H 1.48502 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47245 * 299.99548 * 8 6 4 12 12 N 1.46901 * 109.47135 * 120.00461 * 2 1 3 13 13 C 1.46901 * 111.00070 * 176.04202 * 12 2 1 14 14 C 1.46894 * 111.00108 * 299.99907 * 12 2 1 15 15 C 1.52999 * 109.47256 * 159.60756 * 14 12 2 16 16 O 1.42902 * 109.46749 * 66.71803 * 15 14 12 17 17 C 1.35902 * 116.99629 * 180.02562 * 16 15 14 18 18 C 1.38755 * 120.05655 * 359.71861 * 17 16 15 19 19 C 1.38131 * 119.94037 * 179.79117 * 18 17 16 20 20 C 1.38284 * 120.05510 * 0.49150 * 19 18 17 21 21 C 1.38240 * 120.11560 * 359.74329 * 20 19 18 22 22 N 1.47998 * 119.97392 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00369 * 180.02562 * 22 21 20 24 24 O 1.21805 * 119.99980 * 0.02562 * 22 21 20 25 25 C 1.38164 * 120.05212 * 0.02562 * 21 20 19 26 26 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47065 * 299.99531 * 1 2 3 28 28 H 1.08998 * 109.47406 * 59.99397 * 1 2 3 29 29 H 0.96997 * 119.99712 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47260 * 190.82274 * 13 12 2 31 31 H 1.09000 * 109.47354 * 310.82324 * 13 12 2 32 32 H 1.08994 * 109.46648 * 70.81987 * 13 12 2 33 33 H 1.09004 * 109.46819 * 279.61000 * 14 12 2 34 34 H 1.08999 * 109.47009 * 39.60917 * 14 12 2 35 35 H 1.08999 * 109.47135 * 186.71554 * 15 14 12 36 36 H 1.09000 * 109.47482 * 306.71870 * 15 14 12 37 37 H 1.07998 * 120.02926 * 0.02562 * 18 17 16 38 38 H 1.07998 * 119.96946 * 180.23127 * 19 18 17 39 39 H 1.08000 * 119.93904 * 179.76791 * 20 19 18 40 40 H 1.08005 * 120.02625 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.8256 -2.5199 -4.0080 10 1 1.8258 -0.4203 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0196 -0.6926 1.1994 13 6 3.4850 -0.7947 1.1869 14 6 1.5487 -0.0266 2.4210 15 6 1.6239 -1.0037 3.5960 16 8 2.9920 -1.3073 3.8761 17 6 3.2359 -2.1680 4.8991 18 6 2.1804 -2.7049 5.6223 19 6 2.4309 -3.5829 6.6588 20 6 3.7327 -3.9190 6.9824 21 6 4.7862 -3.3818 6.2665 22 7 6.1781 -3.7442 6.6152 23 8 7.1068 -3.2708 5.9851 24 8 6.3951 -4.5159 7.5323 25 6 4.5407 -2.5069 5.2258 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.7081 1.1611 -3.4843 30 1 3.8088 -1.4717 1.9774 31 1 3.8143 -1.1794 0.2217 32 1 3.9193 0.1912 1.3524 33 1 2.1772 0.8396 2.6279 34 1 0.5171 0.2975 2.2835 35 1 1.1649 -0.5511 4.4749 36 1 1.0932 -1.9208 3.3405 37 1 1.1638 -2.4394 5.3726 38 1 1.6096 -4.0039 7.2197 39 1 3.9265 -4.6028 7.7956 40 1 5.3642 -2.0871 4.6670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129650560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:08 Heat of formation + Delta-G solvation = -1.393113 kcal Electronic energy + Delta-G solvation = -23213.018312 eV Core-core repulsion = 19611.231457 eV Total energy + Delta-G solvation = -3601.786855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34015 -40.52228 -38.17796 -36.77137 -36.67962 -33.01180 -32.22446 -31.12003 -29.58858 -28.95619 -26.85973 -25.49563 -24.17006 -23.29875 -22.74651 -21.55449 -19.80868 -19.39959 -18.81386 -17.68988 -17.36678 -16.71917 -16.43167 -16.21769 -16.00523 -15.17322 -14.56406 -14.18771 -13.92907 -13.87426 -13.21622 -12.95548 -12.70557 -12.45044 -12.16340 -11.98820 -11.74570 -11.66123 -11.33998 -11.28573 -11.12330 -11.04064 -10.94195 -10.71835 -10.63307 -10.22444 -10.02295 -9.93144 -9.86298 -8.96613 -8.75982 -8.48174 -7.30908 -6.07579 -4.12118 -0.38874 0.73492 1.15864 1.16827 2.93782 3.02238 3.28886 3.33233 3.36296 4.12373 4.34737 4.36483 4.42609 4.52490 4.68519 4.73397 5.03722 5.13421 5.23982 5.32947 5.43524 5.45698 5.61526 5.68567 5.71201 5.91393 6.06346 6.22686 6.29689 6.43397 6.71744 6.83903 6.92988 7.04034 7.08857 7.42338 7.47507 7.61995 7.75717 8.10204 8.23536 8.50028 8.93855 9.53171 10.99348 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.003097 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.429116 B = 9040.143996 C = 9831.931801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.536 5.536 13 C 0.034 3.966 14 C 0.046 3.954 15 C 0.064 3.936 16 O -0.291 6.291 17 C 0.148 3.852 18 C -0.162 4.162 19 C -0.076 4.076 20 C -0.105 4.105 21 C -0.005 4.005 22 N 0.028 4.972 23 O -0.154 6.154 24 O -0.161 6.161 25 C -0.098 4.098 26 H 0.035 0.965 27 H 0.008 0.992 28 H 0.087 0.913 29 H 0.261 0.739 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.009 0.991 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -5.739 18.490 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.261 5.261 13 C -0.114 4.114 14 C -0.083 4.083 15 C -0.011 4.011 16 O -0.204 6.204 17 C 0.100 3.900 18 C -0.181 4.181 19 C -0.094 4.094 20 C -0.124 4.124 21 C -0.088 4.088 22 N 0.549 4.451 23 O -0.372 6.372 24 O -0.376 6.376 25 C -0.117 4.117 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.054 0.946 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.577 -5.802 18.011 18.931 hybrid contribution 0.738 0.281 -0.728 1.074 sum 0.161 -5.521 17.283 18.144 Atomic orbital electron populations 1.21897 0.97812 0.99673 0.99866 1.19261 0.92203 0.92155 0.85951 0.98347 1.21105 1.31188 1.12384 0.89720 0.91831 1.24926 0.95147 0.95056 0.99060 1.69871 1.36809 1.23004 1.23625 0.86569 0.79173 0.79738 0.82001 1.20207 1.21327 1.20261 1.62159 1.10154 1.51982 1.01784 1.22386 0.87959 0.98747 1.02291 1.22275 1.02190 0.93764 0.90054 1.23279 0.79262 1.00554 0.98019 1.86339 1.30343 1.58130 1.45538 1.18738 0.92156 0.90666 0.88474 1.21821 1.00001 0.99153 0.97087 1.20969 0.95795 0.96254 0.96417 1.20903 0.90964 1.00317 1.00206 1.20701 0.81354 1.04868 1.01885 1.43579 1.03250 0.98903 0.99417 1.94571 1.36144 1.55130 1.51318 1.94525 1.90770 1.30504 1.21822 1.20126 0.97167 0.97732 0.96708 0.94603 0.97358 0.89489 0.92871 0.92465 0.90514 0.97278 0.94552 0.88271 0.92078 0.90674 0.83406 0.83393 0.83077 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.81 37.16 0.33 -2.75 16 2 C 0.21 5.08 2.06 -68.86 -0.14 4.94 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 4 C -0.51 -13.48 7.79 -34.44 -0.27 -13.75 16 5 H 0.06 1.70 6.46 -52.48 -0.34 1.36 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.54 -10.86 4.55 -236.29 -1.07 -11.94 16 13 C 0.03 0.67 8.95 60.07 0.54 1.21 16 14 C 0.05 0.74 5.40 -3.83 -0.02 0.72 16 15 C 0.06 0.78 5.06 37.16 0.19 0.97 16 16 O -0.29 -3.87 7.44 -19.43 -0.14 -4.02 16 17 C 0.15 1.67 6.69 -39.22 -0.26 1.41 16 18 C -0.16 -1.40 9.04 -39.43 -0.36 -1.75 16 19 C -0.08 -0.54 10.04 -39.60 -0.40 -0.94 16 20 C -0.10 -0.92 9.55 -39.56 -0.38 -1.30 16 21 C -0.01 -0.06 6.85 -79.98 -0.55 -0.61 16 22 N 0.03 0.38 4.45 33.95 0.15 0.53 16 23 O -0.15 -2.23 18.45 -29.46 -0.54 -2.77 16 24 O -0.16 -2.15 18.44 -29.46 -0.54 -2.69 16 25 C -0.10 -1.14 9.49 -39.43 -0.37 -1.52 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.01 0.15 6.03 -51.93 -0.31 -0.16 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.06 1.01 5.90 -51.93 -0.31 0.71 16 31 H 0.08 1.64 5.92 -51.93 -0.31 1.33 16 32 H 0.01 0.17 7.93 -51.93 -0.41 -0.24 16 33 H 0.04 0.59 7.85 -51.93 -0.41 0.19 16 34 H 0.10 1.54 5.52 -51.93 -0.29 1.25 16 35 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 36 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 37 H 0.15 1.00 6.30 -52.49 -0.33 0.67 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.15 1.08 7.61 -52.49 -0.40 0.68 16 40 H 0.16 1.89 7.61 -52.48 -0.40 1.49 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -29.46 331.71 -8.35 -37.81 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.02 Total: -1.76 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.79 Total: -11.87 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.30 Total: -35.67 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.23 Total: -9.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.46 -8.35 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129650560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.416 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds