Wall clock time and date at job start Tue Mar 31 2020 07:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47218 * 2 1 4 4 C 1.50706 * 109.46810 * 240.00380 * 2 1 3 5 5 H 1.08004 * 119.99703 * 240.00002 * 4 2 1 6 6 C 1.37875 * 120.00168 * 60.00361 * 4 2 1 7 7 N 1.31517 * 119.99716 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47580 * 59.99786 * 8 6 4 10 10 H 1.48502 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47245 * 299.99548 * 8 6 4 12 12 N 1.46901 * 109.47135 * 120.00461 * 2 1 3 13 13 C 1.46901 * 111.00070 * 176.04202 * 12 2 1 14 14 C 1.46894 * 111.00108 * 299.99907 * 12 2 1 15 15 C 1.52999 * 109.47256 * 159.60756 * 14 12 2 16 16 O 1.42902 * 109.46749 * 66.71803 * 15 14 12 17 17 C 1.35902 * 116.99629 * 180.02562 * 16 15 14 18 18 C 1.38755 * 120.05655 * 359.71861 * 17 16 15 19 19 C 1.38131 * 119.94037 * 179.79117 * 18 17 16 20 20 C 1.38284 * 120.05510 * 0.49150 * 19 18 17 21 21 C 1.38240 * 120.11560 * 359.74329 * 20 19 18 22 22 N 1.47998 * 119.97392 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00369 * 180.02562 * 22 21 20 24 24 O 1.21805 * 119.99980 * 0.02562 * 22 21 20 25 25 C 1.38164 * 120.05212 * 0.02562 * 21 20 19 26 26 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47065 * 299.99531 * 1 2 3 28 28 H 1.08998 * 109.47406 * 59.99397 * 1 2 3 29 29 H 0.96997 * 119.99712 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47260 * 190.82274 * 13 12 2 31 31 H 1.09000 * 109.47354 * 310.82324 * 13 12 2 32 32 H 1.08994 * 109.46648 * 70.81987 * 13 12 2 33 33 H 1.09004 * 109.46819 * 279.61000 * 14 12 2 34 34 H 1.08999 * 109.47009 * 39.60917 * 14 12 2 35 35 H 1.08999 * 109.47135 * 186.71554 * 15 14 12 36 36 H 1.09000 * 109.47482 * 306.71870 * 15 14 12 37 37 H 1.07998 * 120.02926 * 0.02562 * 18 17 16 38 38 H 1.07998 * 119.96946 * 180.23127 * 19 18 17 39 39 H 1.08000 * 119.93904 * 179.76791 * 20 19 18 40 40 H 1.08005 * 120.02625 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.8256 -2.5199 -4.0080 10 1 1.8258 -0.4203 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0196 -0.6926 1.1994 13 6 3.4850 -0.7947 1.1869 14 6 1.5487 -0.0266 2.4210 15 6 1.6239 -1.0037 3.5960 16 8 2.9920 -1.3073 3.8761 17 6 3.2359 -2.1680 4.8991 18 6 2.1804 -2.7049 5.6223 19 6 2.4309 -3.5829 6.6588 20 6 3.7327 -3.9190 6.9824 21 6 4.7862 -3.3818 6.2665 22 7 6.1781 -3.7442 6.6152 23 8 7.1068 -3.2708 5.9851 24 8 6.3951 -4.5159 7.5323 25 6 4.5407 -2.5069 5.2258 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.7081 1.1611 -3.4843 30 1 3.8088 -1.4717 1.9774 31 1 3.8143 -1.1794 0.2217 32 1 3.9193 0.1912 1.3524 33 1 2.1772 0.8396 2.6279 34 1 0.5171 0.2975 2.2835 35 1 1.1649 -0.5511 4.4749 36 1 1.0932 -1.9208 3.3405 37 1 1.1638 -2.4394 5.3726 38 1 1.6096 -4.0039 7.2197 39 1 3.9265 -4.6028 7.7956 40 1 5.3642 -2.0871 4.6670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129650560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:08 Heat of formation + Delta-G solvation = -18.573990 kcal Electronic energy + Delta-G solvation = -23213.763331 eV Core-core repulsion = 19611.231457 eV Total energy + Delta-G solvation = -3602.531873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30901 -41.37239 -39.26070 -38.13940 -37.72730 -34.88551 -32.98083 -32.23158 -31.03424 -30.37025 -27.82877 -27.27050 -25.75521 -24.17321 -23.84201 -22.73498 -21.20550 -20.56078 -19.80392 -18.67313 -18.36758 -18.24586 -17.40609 -17.36937 -16.95177 -16.87270 -15.85985 -15.30865 -15.28505 -15.09403 -14.56223 -14.16083 -13.93423 -13.76760 -13.40961 -13.12651 -12.96105 -12.88715 -12.70880 -12.64611 -12.52193 -12.37158 -12.35170 -12.25114 -12.13682 -11.98448 -11.84160 -11.47563 -10.87768 -10.63989 -10.51579 -9.57626 -8.98613 -8.13128 -6.24181 -1.29909 0.02280 0.27178 0.28286 1.41807 1.42324 1.50079 2.05419 2.29432 2.40872 3.15033 3.32301 3.45089 3.63882 3.71219 3.79347 3.98573 4.10133 4.23936 4.35230 4.38013 4.58264 4.60939 4.70306 4.75076 4.86621 4.93150 4.98492 5.01584 5.04643 5.06639 5.18408 5.29250 5.38113 5.51889 5.70990 5.80266 6.20880 6.26681 6.36205 6.43246 6.71571 6.90133 7.44890 8.92474 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.003097 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.429116 B = 9040.143996 C = 9831.931801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.213 3.787 3 H -0.039 1.039 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.539 5.539 13 C 0.044 3.956 14 C 0.042 3.958 15 C 0.070 3.930 16 O -0.318 6.318 17 C 0.131 3.869 18 C -0.148 4.148 19 C -0.060 4.060 20 C -0.094 4.094 21 C -0.023 4.023 22 N 0.029 4.971 23 O -0.204 6.204 24 O -0.149 6.149 25 C -0.117 4.117 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.262 0.738 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.002 0.998 33 H 0.029 0.971 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.176 0.824 38 H 0.194 0.806 39 H 0.172 0.828 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -7.246 20.562 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 H -0.022 1.022 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.264 5.264 13 C -0.105 4.105 14 C -0.086 4.086 15 C -0.004 4.004 16 O -0.231 6.231 17 C 0.084 3.916 18 C -0.166 4.166 19 C -0.078 4.078 20 C -0.114 4.114 21 C -0.106 4.106 22 N 0.545 4.455 23 O -0.411 6.411 24 O -0.371 6.371 25 C -0.137 4.137 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.193 0.807 38 H 0.211 0.789 39 H 0.189 0.811 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.517 -7.271 20.047 21.473 hybrid contribution 1.289 0.710 -1.216 1.909 sum -1.227 -6.561 18.831 19.980 Atomic orbital electron populations 1.21690 0.96665 0.99571 1.00093 1.19073 0.93052 0.90083 0.87184 1.02156 1.21419 1.31132 1.12316 0.91174 0.92534 1.25655 0.95390 0.95754 1.01752 1.69995 1.37668 1.24078 1.24115 0.85646 0.78601 0.78829 0.78772 1.19622 1.20878 1.20050 1.62128 1.10158 1.51957 1.02143 1.22283 0.87951 0.98653 1.01587 1.22402 1.02083 0.94640 0.89512 1.23186 0.79298 1.00134 0.97789 1.86244 1.30868 1.59172 1.46849 1.18813 0.92571 0.91342 0.88909 1.22200 1.00302 0.97946 0.96171 1.21483 0.96037 0.94740 0.95529 1.21340 0.90860 0.99452 0.99709 1.20858 0.80457 1.06231 1.03037 1.43902 1.04097 0.98475 0.99026 1.94575 1.37310 1.56715 1.52459 1.94479 1.91196 1.29943 1.21467 1.20069 0.97423 0.98750 0.97430 0.94645 0.94111 0.92313 0.92910 0.90427 0.92970 0.97989 0.95232 0.87592 0.87998 0.89920 0.80710 0.78913 0.81072 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.81 71.98 0.63 -4.93 16 2 C 0.21 10.47 2.06 44.17 0.09 10.56 16 3 H -0.04 -2.17 8.14 -2.39 -0.02 -2.19 16 4 C -0.52 -28.40 7.79 25.60 0.20 -28.20 16 5 H 0.06 3.09 6.46 -2.91 -0.02 3.07 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.09 11.32 21.45 0.24 -51.85 16 8 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 N -0.54 -21.77 4.55 -901.49 -4.10 -25.87 16 13 C 0.04 1.74 8.95 127.69 1.14 2.88 16 14 C 0.04 1.27 5.40 86.30 0.47 1.74 16 15 C 0.07 1.50 5.06 71.98 0.36 1.87 16 16 O -0.32 -7.94 7.44 -92.44 -0.69 -8.62 16 17 C 0.13 2.69 6.69 22.51 0.15 2.84 16 18 C -0.15 -1.88 9.04 22.37 0.20 -1.68 16 19 C -0.06 -0.55 10.04 22.26 0.22 -0.32 16 20 C -0.09 -1.33 9.55 22.28 0.21 -1.12 16 21 C -0.02 -0.50 6.85 36.36 0.25 -0.25 16 22 N 0.03 0.79 4.45 -46.52 -0.21 0.58 16 23 O -0.20 -6.26 18.45 18.89 0.35 -5.91 16 24 O -0.15 -3.87 18.44 18.88 0.35 -3.52 16 25 C -0.12 -2.72 9.49 22.37 0.21 -2.51 16 26 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.54 6.03 -2.39 -0.01 1.53 16 28 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 29 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.08 2.77 5.90 -2.39 -0.01 2.76 16 31 H 0.05 2.31 5.92 -2.39 -0.01 2.29 16 32 H 0.00 0.06 7.93 -2.39 -0.02 0.04 16 33 H 0.03 0.94 7.85 -2.38 -0.02 0.93 16 34 H 0.11 3.05 5.52 -2.39 -0.01 3.03 16 35 H 0.10 1.38 7.65 -2.39 -0.02 1.36 16 36 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 37 H 0.18 1.30 6.30 -2.91 -0.02 1.28 16 38 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.17 1.73 7.61 -2.91 -0.02 1.71 16 40 H 0.14 3.68 7.61 -2.91 -0.02 3.65 16 Total: -1.00 -66.92 331.71 3.63 -63.29 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.06 Total: 4.35 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.60 Total: -17.94 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -4.06 Total: -77.13 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.01 Total: -18.06 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.92 3.63 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129650560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.719 kcal (2) G-P(sol) polarization free energy of solvation -66.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds