Wall clock time and date at job start Tue Mar 31 2020 07:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99832 * 2 1 4 4 C 1.38643 * 119.99206 * 179.97438 * 3 2 1 5 5 C 1.38818 * 119.98496 * 179.97438 * 4 3 2 6 6 N 1.39936 * 120.01405 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00088 * 35.10180 * 6 5 4 8 8 O 1.21590 * 120.00016 * 355.39088 * 7 6 5 9 9 N 1.34776 * 120.00018 * 175.39059 * 7 6 5 10 10 C 1.46502 * 120.00297 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46504 * 324.99875 * 10 9 7 12 12 C 1.52997 * 109.47172 * 84.99496 * 10 9 7 13 13 C 1.50699 * 109.47153 * 204.99989 * 10 9 7 14 14 H 1.07999 * 120.00230 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99717 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00390 * 0.02562 * 15 13 10 17 17 Si 1.86807 * 119.99914 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47031 * 270.00442 * 17 15 13 19 19 H 1.48497 * 109.46958 * 30.00080 * 17 15 13 20 20 H 1.48499 * 109.46983 * 150.00357 * 17 15 13 21 21 C 1.38806 * 119.96966 * 0.27959 * 5 4 3 22 22 C 1.38654 * 119.98587 * 359.48622 * 21 5 4 23 23 O 1.35894 * 119.99281 * 180.23627 * 22 21 5 24 24 C 1.42900 * 117.00047 * 180.25656 * 23 22 21 25 25 C 1.38687 * 120.01060 * 0.49355 * 22 21 5 26 26 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47034 * 300.00175 * 1 2 3 28 28 H 1.09001 * 109.47417 * 60.00301 * 1 2 3 29 29 H 1.08003 * 120.00929 * 359.97438 * 4 3 2 30 30 H 0.97003 * 119.99709 * 215.10690 * 6 5 4 31 31 H 0.97004 * 120.00323 * 359.97438 * 9 7 6 32 32 H 1.09006 * 109.46932 * 180.02562 * 12 10 9 33 33 H 1.08999 * 109.47380 * 299.99998 * 12 10 9 34 34 H 1.08999 * 109.47484 * 60.00502 * 12 10 9 35 35 H 0.97000 * 119.99760 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.00663 * 179.72658 * 21 5 4 37 37 H 1.09000 * 109.46971 * 59.99349 * 24 23 22 38 38 H 1.08994 * 109.47049 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.46782 * 300.00270 * 24 23 22 40 40 H 1.08001 * 119.98307 * 179.74812 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4304 1.2833 0.0005 5 6 4.0605 2.5202 0.0000 6 7 5.4579 2.5940 0.0000 7 6 6.1812 1.6757 -0.6707 8 8 5.6250 0.7361 -1.2056 9 7 7.5211 1.7989 -0.7486 10 6 8.3073 0.8010 -1.4781 11 1 7.8545 -0.1823 -1.3506 12 6 8.3348 1.1609 -2.9649 13 6 9.7149 0.7795 -0.9403 14 1 9.9959 1.4430 -0.1359 15 6 10.6440 -0.0874 -1.4754 16 7 10.3021 -0.8951 -2.4553 17 14 12.3891 -0.1137 -0.8093 18 1 13.2227 0.8539 -1.5669 19 1 12.3763 0.2625 0.6272 20 1 12.9554 -1.4783 -0.9586 21 6 3.3037 3.6839 0.0048 22 6 1.9191 3.6100 -0.0007 23 8 1.1781 4.7492 -0.0008 24 6 -0.2429 4.5987 -0.0009 25 6 1.2904 2.3739 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0187 0.3775 0.0014 30 1 5.9059 3.3061 0.4828 31 1 7.9648 2.5488 -0.3222 32 1 8.9194 0.4181 -3.5078 33 1 7.3166 1.1764 -3.3539 34 1 8.7875 2.1442 -3.0925 35 1 10.9559 -1.5047 -2.8319 36 1 3.7932 4.6465 0.0088 37 1 -0.5502 4.0495 0.8891 38 1 -0.7124 5.5823 -0.0006 39 1 -0.5500 4.0493 -0.8908 40 1 0.2119 2.3169 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152820651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:29 Heat of formation + Delta-G solvation = -71.767262 kcal Electronic energy + Delta-G solvation = -23260.441556 eV Core-core repulsion = 19655.603049 eV Total energy + Delta-G solvation = -3604.838507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71034 -39.52451 -38.84949 -36.86824 -34.82695 -33.79133 -32.34654 -30.29661 -29.60603 -28.43971 -27.65971 -26.69934 -25.23946 -22.81457 -22.35119 -20.93556 -19.85866 -18.83773 -18.29846 -16.96342 -16.42557 -16.08196 -16.05743 -15.72689 -15.57539 -15.46983 -14.89207 -14.72384 -14.44987 -14.05093 -13.39909 -13.11327 -12.75249 -12.54598 -12.37497 -12.31406 -11.78734 -11.70769 -11.44658 -11.30603 -11.11911 -11.05287 -10.85886 -10.67236 -10.30600 -10.22313 -9.64624 -9.35051 -9.03128 -8.56270 -8.14438 -7.94628 -7.77036 -6.11673 -4.20951 1.36223 1.56809 2.83425 3.21482 3.25304 3.32044 3.34109 3.48688 3.64039 4.02534 4.33342 4.75453 4.86012 4.88339 4.90440 4.99611 5.01970 5.12736 5.20054 5.21015 5.26515 5.31635 5.45369 5.67164 6.11517 6.24060 6.37789 6.53019 6.82080 6.99663 7.04322 7.09976 7.14739 7.25185 7.46554 7.52307 7.63098 7.84112 8.00259 8.16249 8.73070 8.84934 9.23568 9.47316 10.94385 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003100 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.718206 B = 9030.661894 C = 9623.130689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.180 3.820 4 C -0.187 4.187 5 C 0.256 3.744 6 N -0.692 5.692 7 C 0.692 3.308 8 O -0.575 6.575 9 N -0.717 5.717 10 C 0.280 3.720 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.534 4.534 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.903 3.097 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.285 1.285 21 C -0.222 4.222 22 C 0.178 3.822 23 O -0.315 6.315 24 C 0.029 3.971 25 C -0.320 4.320 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.155 0.845 30 H 0.406 0.594 31 H 0.387 0.613 32 H 0.091 0.909 33 H 0.016 0.984 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.133 0.867 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.503 9.398 6.294 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.133 3.867 4 C -0.208 4.208 5 C 0.158 3.842 6 N -0.340 5.340 7 C 0.392 3.608 8 O -0.452 6.452 9 N -0.368 5.368 10 C 0.178 3.822 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.211 1.211 21 C -0.244 4.244 22 C 0.132 3.868 23 O -0.228 6.228 24 C -0.066 4.066 25 C -0.340 4.340 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.172 0.828 30 H 0.241 0.759 31 H 0.219 0.781 32 H 0.109 0.891 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.638 8.329 5.619 22.059 hybrid contribution 0.863 0.716 0.666 1.304 sum -18.775 9.045 6.285 21.767 Atomic orbital electron populations 1.23032 0.78818 1.03820 1.01021 1.86137 1.20982 1.26795 1.88291 1.18465 0.91614 0.83420 0.93151 1.20505 0.91254 0.99096 1.09970 1.16704 0.82163 0.91873 0.93495 1.42824 1.03808 1.32568 1.54806 1.16158 0.82755 0.82316 0.79538 1.90901 1.70195 1.32500 1.51631 1.45873 1.03475 1.30396 1.57094 1.18702 0.88956 0.86758 0.87738 0.93168 1.22109 0.98301 1.00829 0.99487 1.21206 0.94501 1.22168 1.19386 0.92038 1.24882 0.99026 0.94981 0.94811 1.69908 1.34842 1.22496 1.24760 0.86429 0.83889 0.77410 0.79247 1.20562 1.19860 1.21064 1.19845 0.90578 0.98071 1.15947 1.18205 0.90344 0.84322 0.93925 1.86055 1.18884 1.29213 1.88674 1.23023 0.78714 1.03614 1.01286 1.21095 1.00085 0.91916 1.20904 0.88265 0.92895 0.92821 0.82785 0.75876 0.78100 0.89082 0.96533 0.95495 0.92536 0.84924 0.92781 0.88330 0.92732 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.41 10.49 -19.41 -0.20 -4.62 16 3 C 0.18 2.73 6.68 -39.27 -0.26 2.47 16 4 C -0.19 -3.28 8.63 -39.22 -0.34 -3.62 16 5 C 0.26 4.10 6.29 -83.73 -0.53 3.57 16 6 N -0.69 -10.96 5.34 -14.25 -0.08 -11.04 16 7 C 0.69 14.24 8.37 -86.92 -0.73 13.52 16 8 O -0.58 -14.14 13.44 5.29 0.07 -14.07 16 9 N -0.72 -14.93 5.07 -59.81 -0.30 -15.24 16 10 C 0.28 7.15 2.56 -69.08 -0.18 6.98 16 11 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 12 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 13 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 17 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.22 -3.09 9.90 -39.22 -0.39 -3.48 16 22 C 0.18 2.35 6.68 -39.26 -0.26 2.08 16 23 O -0.32 -3.63 10.49 -19.41 -0.20 -3.83 16 24 C 0.03 0.21 9.81 101.05 0.99 1.20 16 25 C -0.32 -4.05 8.02 -39.25 -0.31 -4.37 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.15 3.14 6.22 -52.48 -0.33 2.81 16 30 H 0.41 4.87 8.84 -40.82 -0.36 4.51 16 31 H 0.39 6.80 8.56 -40.82 -0.35 6.45 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.13 1.26 4.52 -52.49 -0.24 1.02 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -32.88 336.15 -6.34 -39.22 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.23 Total: 9.72 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.07 Total: 3.49 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.25 Total: -50.55 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.34 Total: -22.52 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.88 -6.34 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152820651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.550 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds