Wall clock time and date at job start Tue Mar 31 2020 07:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99832 * 2 1 4 4 C 1.38643 * 119.99206 * 179.97438 * 3 2 1 5 5 C 1.38818 * 119.98496 * 179.97438 * 4 3 2 6 6 N 1.39936 * 120.01405 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00088 * 35.10180 * 6 5 4 8 8 O 1.21590 * 120.00016 * 355.39088 * 7 6 5 9 9 N 1.34776 * 120.00018 * 175.39059 * 7 6 5 10 10 C 1.46502 * 120.00297 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46504 * 324.99875 * 10 9 7 12 12 C 1.52997 * 109.47172 * 84.99496 * 10 9 7 13 13 C 1.50699 * 109.47153 * 204.99989 * 10 9 7 14 14 H 1.07999 * 120.00230 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99717 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00390 * 0.02562 * 15 13 10 17 17 Si 1.86807 * 119.99914 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47031 * 270.00442 * 17 15 13 19 19 H 1.48497 * 109.46958 * 30.00080 * 17 15 13 20 20 H 1.48499 * 109.46983 * 150.00357 * 17 15 13 21 21 C 1.38806 * 119.96966 * 0.27959 * 5 4 3 22 22 C 1.38654 * 119.98587 * 359.48622 * 21 5 4 23 23 O 1.35894 * 119.99281 * 180.23627 * 22 21 5 24 24 C 1.42900 * 117.00047 * 180.25656 * 23 22 21 25 25 C 1.38687 * 120.01060 * 0.49355 * 22 21 5 26 26 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47034 * 300.00175 * 1 2 3 28 28 H 1.09001 * 109.47417 * 60.00301 * 1 2 3 29 29 H 1.08003 * 120.00929 * 359.97438 * 4 3 2 30 30 H 0.97003 * 119.99709 * 215.10690 * 6 5 4 31 31 H 0.97004 * 120.00323 * 359.97438 * 9 7 6 32 32 H 1.09006 * 109.46932 * 180.02562 * 12 10 9 33 33 H 1.08999 * 109.47380 * 299.99998 * 12 10 9 34 34 H 1.08999 * 109.47484 * 60.00502 * 12 10 9 35 35 H 0.97000 * 119.99760 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.00663 * 179.72658 * 21 5 4 37 37 H 1.09000 * 109.46971 * 59.99349 * 24 23 22 38 38 H 1.08994 * 109.47049 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.46782 * 300.00270 * 24 23 22 40 40 H 1.08001 * 119.98307 * 179.74812 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4304 1.2833 0.0005 5 6 4.0605 2.5202 0.0000 6 7 5.4579 2.5940 0.0000 7 6 6.1812 1.6757 -0.6707 8 8 5.6250 0.7361 -1.2056 9 7 7.5211 1.7989 -0.7486 10 6 8.3073 0.8010 -1.4781 11 1 7.8545 -0.1823 -1.3506 12 6 8.3348 1.1609 -2.9649 13 6 9.7149 0.7795 -0.9403 14 1 9.9959 1.4430 -0.1359 15 6 10.6440 -0.0874 -1.4754 16 7 10.3021 -0.8951 -2.4553 17 14 12.3891 -0.1137 -0.8093 18 1 13.2227 0.8539 -1.5669 19 1 12.3763 0.2625 0.6272 20 1 12.9554 -1.4783 -0.9586 21 6 3.3037 3.6839 0.0048 22 6 1.9191 3.6100 -0.0007 23 8 1.1781 4.7492 -0.0008 24 6 -0.2429 4.5987 -0.0009 25 6 1.2904 2.3739 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0187 0.3775 0.0014 30 1 5.9059 3.3061 0.4828 31 1 7.9648 2.5488 -0.3222 32 1 8.9194 0.4181 -3.5078 33 1 7.3166 1.1764 -3.3539 34 1 8.7875 2.1442 -3.0925 35 1 10.9559 -1.5047 -2.8319 36 1 3.7932 4.6465 0.0088 37 1 -0.5502 4.0495 0.8891 38 1 -0.7124 5.5823 -0.0006 39 1 -0.5500 4.0493 -0.8908 40 1 0.2119 2.3169 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152820651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:28 Heat of formation + Delta-G solvation = -96.107317 kcal Electronic energy + Delta-G solvation = -23261.497020 eV Core-core repulsion = 19655.603049 eV Total energy + Delta-G solvation = -3605.893971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89975 -40.92315 -39.78036 -38.16357 -36.64401 -35.21438 -34.24197 -31.30708 -31.20307 -29.76844 -28.57874 -27.47339 -27.32585 -24.23036 -23.51448 -22.41332 -21.57744 -19.94107 -19.90816 -18.16231 -17.83734 -17.48328 -17.02869 -16.96659 -16.78277 -16.52135 -16.37537 -16.00155 -15.74717 -15.58286 -15.04372 -14.39398 -14.23695 -13.86243 -13.60558 -13.40888 -13.23182 -12.99257 -12.89088 -12.70788 -12.44809 -12.32882 -12.27755 -12.21361 -12.12748 -11.98998 -11.13759 -11.09027 -10.74071 -10.59728 -9.84461 -9.12562 -9.03700 -8.16541 -6.34042 0.22019 0.44461 1.46024 1.47489 1.56184 1.61429 2.12193 2.34306 2.37882 2.46576 2.75693 3.14137 3.45480 3.95683 3.97940 4.10795 4.27129 4.34566 4.37594 4.42874 4.44267 4.52236 4.70624 4.73645 4.77835 4.92707 4.95492 5.10013 5.19251 5.25316 5.27398 5.41247 5.59744 5.66676 5.78167 5.86148 6.09435 6.18914 6.26490 6.52290 6.73637 7.21016 7.34579 7.65382 8.90135 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003100 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.718206 B = 9030.661894 C = 9623.130689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.174 3.826 4 C -0.223 4.223 5 C 0.239 3.761 6 N -0.672 5.672 7 C 0.692 3.308 8 O -0.620 6.620 9 N -0.711 5.711 10 C 0.288 3.712 11 H 0.000 1.000 12 C -0.134 4.134 13 C -0.546 4.546 14 H 0.076 0.924 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.264 1.264 20 H -0.287 1.287 21 C -0.220 4.220 22 C 0.183 3.817 23 O -0.322 6.322 24 C 0.015 3.985 25 C -0.306 4.306 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.426 0.574 31 H 0.405 0.595 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.154 0.846 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.063 0.937 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.795 11.843 7.433 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.128 3.872 4 C -0.244 4.244 5 C 0.142 3.858 6 N -0.321 5.321 7 C 0.393 3.607 8 O -0.500 6.500 9 N -0.364 5.364 10 C 0.185 3.815 11 H 0.017 0.983 12 C -0.193 4.193 13 C -0.585 4.585 14 H 0.094 0.906 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.800 3.200 18 H -0.196 1.196 19 H -0.188 1.188 20 H -0.213 1.213 21 C -0.241 4.241 22 C 0.136 3.864 23 O -0.235 6.235 24 C -0.079 4.079 25 C -0.326 4.326 26 H 0.136 0.864 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.265 0.735 31 H 0.241 0.759 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.970 10.849 6.804 24.571 hybrid contribution 1.012 -0.029 0.327 1.064 sum -19.958 10.820 7.131 23.796 Atomic orbital electron populations 1.23418 0.75989 1.05751 1.02616 1.86109 1.24009 1.26807 1.88176 1.18506 0.91011 0.84705 0.93006 1.20368 0.92618 0.98312 1.13143 1.16812 0.81869 0.92287 0.94861 1.42412 1.03909 1.31835 1.53971 1.16244 0.82598 0.82415 0.79468 1.90884 1.71025 1.34598 1.53524 1.45441 1.03578 1.30215 1.57139 1.18276 0.89087 0.85677 0.88483 0.98257 1.21928 0.97527 1.00797 0.99093 1.21532 0.94679 1.22497 1.19743 0.90607 1.25815 1.03395 0.94459 0.94954 1.70063 1.36282 1.23213 1.26057 0.85299 0.78473 0.77267 0.79002 1.19576 1.18773 1.21321 1.19980 0.91178 0.97840 1.15127 1.18302 0.90398 0.85102 0.92594 1.86065 1.21116 1.28258 1.88111 1.23422 0.76271 1.05799 1.02418 1.21340 1.01590 0.90671 1.19002 0.86442 0.90853 0.91450 0.86886 0.73525 0.75944 0.91334 0.97157 0.93936 0.92515 0.82851 0.91349 0.85800 0.91798 0.81813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -9.69 10.49 -92.38 -0.97 -10.65 16 3 C 0.17 5.31 6.68 22.47 0.15 5.47 16 4 C -0.22 -8.22 8.63 22.51 0.19 -8.03 16 5 C 0.24 7.73 6.29 38.12 0.24 7.97 16 6 N -0.67 -21.47 5.34 -317.27 -1.69 -23.16 16 7 C 0.69 29.56 8.37 179.06 1.50 31.06 16 8 O -0.62 -32.52 13.44 -4.00 -0.05 -32.58 16 9 N -0.71 -30.16 5.07 -461.41 -2.34 -32.50 16 10 C 0.29 15.24 2.56 44.24 0.11 15.35 16 11 H 0.00 -0.03 7.58 -2.38 -0.02 -0.05 16 12 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 13 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 14 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 15 C 0.01 0.75 5.30 84.65 0.45 1.20 16 16 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 17 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 21 C -0.22 -5.76 9.90 22.51 0.22 -5.54 16 22 C 0.18 4.38 6.68 22.48 0.15 4.53 16 23 O -0.32 -6.32 10.49 -92.35 -0.97 -7.29 16 24 C 0.01 0.15 9.81 113.37 1.11 1.27 16 25 C -0.31 -7.10 8.02 22.48 0.18 -6.92 16 26 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 28 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 29 H 0.11 5.08 6.22 -2.91 -0.02 5.06 16 30 H 0.43 9.81 8.84 -92.71 -0.82 8.99 16 31 H 0.41 14.00 8.56 -92.71 -0.79 13.20 16 32 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 38 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 40 H 0.16 2.55 4.52 -2.91 -0.01 2.53 16 Total: -1.00 -75.21 336.15 2.03 -73.18 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.52 Total: 29.16 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.31 Total: 12.61 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.79 Total: -108.56 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.99 Total: -50.52 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -75.21 2.03 -73.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152820651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.927 kcal (2) G-P(sol) polarization free energy of solvation -75.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds