Wall clock time and date at job start Tue Mar 31 2020 07:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99925 * 2 1 4 4 C 1.38647 * 119.98965 * 180.02562 * 3 2 1 5 5 C 1.38819 * 119.98181 * 179.97438 * 4 3 2 6 6 N 1.39933 * 120.01440 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00000 * 143.57369 * 6 5 4 8 8 O 1.21589 * 119.99649 * 4.68194 * 7 6 5 9 9 N 1.34778 * 120.00037 * 184.68119 * 7 6 5 10 10 C 1.46495 * 119.99802 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47614 * 34.99764 * 10 9 7 12 12 C 1.53003 * 109.47010 * 274.99656 * 10 9 7 13 13 C 1.50700 * 109.47038 * 154.99932 * 10 9 7 14 14 H 1.07999 * 120.00082 * 5.56837 * 13 10 9 15 15 C 1.37881 * 120.00064 * 185.56492 * 13 10 9 16 16 N 1.31509 * 119.99985 * 197.30436 * 15 13 10 17 17 Si 1.86799 * 120.00032 * 17.58085 * 15 13 10 18 18 H 1.48492 * 109.47489 * 179.72458 * 17 15 13 19 19 H 1.48505 * 109.46994 * 299.72415 * 17 15 13 20 20 H 1.48503 * 109.46989 * 59.72080 * 17 15 13 21 21 C 1.38810 * 119.96791 * 0.27012 * 5 4 3 22 22 C 1.38647 * 119.98619 * 359.49605 * 21 5 4 23 23 O 1.35895 * 119.99048 * 180.22985 * 22 21 5 24 24 C 1.42901 * 116.99890 * 180.25555 * 23 22 21 25 25 C 1.38685 * 120.01695 * 0.48586 * 22 21 5 26 26 H 1.09000 * 109.46920 * 60.01025 * 1 2 3 27 27 H 1.08998 * 109.46819 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47091 * 300.00337 * 1 2 3 29 29 H 1.07996 * 120.01380 * 359.97088 * 4 3 2 30 30 H 0.96995 * 119.99774 * 323.58009 * 6 5 4 31 31 H 0.97003 * 119.99675 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47303 * 186.29608 * 12 10 9 33 33 H 1.09001 * 109.47080 * 306.29469 * 12 10 9 34 34 H 1.09004 * 109.47269 * 66.29746 * 12 10 9 35 35 H 0.97008 * 120.00125 * 355.01464 * 16 15 13 36 36 H 1.08002 * 120.00250 * 179.72599 * 21 5 4 37 37 H 1.09005 * 109.47289 * 179.97438 * 24 23 22 38 38 H 1.09002 * 109.47086 * 299.99790 * 24 23 22 39 39 H 1.09001 * 109.47487 * 59.99873 * 24 23 22 40 40 H 1.07997 * 119.98849 * 179.74604 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4305 1.2832 -0.0005 5 6 4.0606 2.5202 -0.0011 6 7 5.4580 2.5940 -0.0011 7 6 6.0814 3.5671 -0.6946 8 8 5.4300 4.4305 -1.2500 9 7 7.4268 3.5830 -0.7723 10 6 8.1044 4.6410 -1.5257 11 1 7.5512 5.5742 -1.4194 12 6 8.1700 4.2525 -3.0041 13 6 9.5019 4.8219 -0.9914 14 1 9.8817 4.1515 -0.2347 15 6 10.2956 5.8434 -1.4687 16 7 11.5960 5.8107 -1.2756 17 14 9.5229 7.2774 -2.3830 18 1 10.5823 8.2378 -2.7835 19 1 8.8268 6.7746 -3.5946 20 1 8.5451 7.9597 -1.4977 21 6 3.3038 3.6838 0.0046 22 6 1.9193 3.6100 0.0002 23 8 1.1783 4.7491 0.0011 24 6 -0.2428 4.5986 0.0021 25 6 1.2904 2.3739 0.0004 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0188 0.3775 -0.0005 30 1 5.9779 1.9448 0.4979 31 1 7.9464 2.8939 -0.3295 32 1 8.7703 4.9836 -3.5457 33 1 8.6242 3.2664 -3.1008 34 1 7.1623 4.2308 -3.4191 35 1 11.9887 5.1068 -0.7359 36 1 3.7934 4.6465 0.0087 37 1 -0.7124 5.5824 0.0031 38 1 -0.5506 4.0497 -0.8879 39 1 -0.5494 4.0492 0.8921 40 1 0.2120 2.3169 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152820728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:32 Heat of formation + Delta-G solvation = -71.800575 kcal Electronic energy + Delta-G solvation = -23345.314344 eV Core-core repulsion = 19740.474393 eV Total energy + Delta-G solvation = -3604.839951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79723 -39.65821 -38.91765 -36.99314 -34.99189 -33.91029 -32.42167 -30.37395 -30.03881 -28.74012 -27.82575 -26.76448 -24.82576 -22.87404 -22.40834 -20.89793 -19.87957 -18.90696 -18.57816 -17.24255 -16.96310 -16.31675 -16.13114 -15.83275 -15.69151 -15.63505 -14.86055 -14.74883 -14.55394 -13.91080 -13.34903 -13.23406 -12.82622 -12.67701 -12.52372 -12.39664 -12.20272 -11.78938 -11.75642 -11.52858 -11.45824 -11.35407 -10.95683 -10.45828 -10.02856 -9.80854 -9.72958 -9.51213 -9.08396 -8.35255 -8.30685 -8.04603 -7.94345 -6.58664 -4.21829 1.27319 1.48877 2.73950 3.14318 3.37160 3.41000 3.47197 3.52040 3.62643 3.89919 4.42708 4.68029 4.76131 4.81679 4.85573 4.89016 4.93936 5.05522 5.14829 5.17930 5.19273 5.25866 5.37041 5.59001 6.01967 6.16397 6.28816 6.37600 6.45679 6.57297 6.69288 6.90312 6.94691 7.04209 7.14319 7.38760 7.43606 7.46709 7.76892 8.23924 8.59015 8.73375 9.08601 9.47193 10.82493 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.003396 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.536629 B = 8242.411333 C = 9009.271146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.178 3.822 4 C -0.220 4.220 5 C 0.254 3.746 6 N -0.692 5.692 7 C 0.693 3.307 8 O -0.578 6.578 9 N -0.711 5.711 10 C 0.258 3.742 11 H 0.043 0.957 12 C -0.162 4.162 13 C -0.618 4.618 14 H 0.062 0.938 15 C 0.039 3.961 16 N -0.897 5.897 17 Si 1.042 2.958 18 H -0.283 1.283 19 H -0.271 1.271 20 H -0.279 1.279 21 C -0.185 4.185 22 C 0.180 3.820 23 O -0.310 6.310 24 C 0.028 3.972 25 C -0.318 4.318 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.133 0.867 30 H 0.407 0.593 31 H 0.391 0.609 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.269 0.731 36 H 0.152 0.848 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.066 -10.190 4.064 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.132 3.868 4 C -0.242 4.242 5 C 0.156 3.844 6 N -0.340 5.340 7 C 0.394 3.606 8 O -0.455 6.455 9 N -0.362 5.362 10 C 0.154 3.846 11 H 0.060 0.940 12 C -0.220 4.220 13 C -0.656 4.656 14 H 0.080 0.920 15 C -0.167 4.167 16 N -0.531 5.531 17 Si 0.869 3.131 18 H -0.209 1.209 19 H -0.197 1.197 20 H -0.205 1.205 21 C -0.207 4.207 22 C 0.134 3.866 23 O -0.222 6.222 24 C -0.067 4.067 25 C -0.338 4.338 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.243 0.757 31 H 0.224 0.776 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.170 0.830 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.998 -7.933 2.683 24.475 hybrid contribution -0.320 -2.253 1.332 2.636 sum -23.318 -10.186 4.015 25.761 Atomic orbital electron populations 1.23032 0.78551 1.03778 1.01300 1.86063 1.21249 1.26841 1.88628 1.18211 0.91263 0.83444 0.93847 1.19870 0.91622 0.97089 1.15625 1.16683 0.82160 0.91779 0.93768 1.42756 1.04236 1.33748 1.53223 1.16152 0.83235 0.81654 0.79584 1.90899 1.64772 1.38557 1.51305 1.45584 1.02853 1.32148 1.55633 1.18951 0.92452 0.85581 0.87573 0.93966 1.22527 0.99128 1.01411 0.98978 1.22077 0.97882 1.18044 1.27591 0.92029 1.25689 0.94390 0.99647 0.96996 1.70885 1.10019 1.36943 1.35204 0.84080 0.75593 0.76167 0.77213 1.20911 1.19682 1.20515 1.20447 0.90088 1.00137 1.09987 1.18451 0.90708 0.84330 0.93144 1.86134 1.18756 1.29060 1.88277 1.23042 0.78851 1.03754 1.01066 1.21111 1.00142 0.91906 1.20657 0.92711 0.88276 0.92745 0.84865 0.75734 0.77587 0.91853 0.93755 0.95061 0.92117 0.83021 0.88221 0.92791 0.92845 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.50 10.49 -19.43 -0.20 -3.70 16 3 C 0.18 2.27 6.68 -39.26 -0.26 2.00 16 4 C -0.22 -2.96 9.90 -39.22 -0.39 -3.34 16 5 C 0.25 3.92 6.26 -83.73 -0.52 3.40 16 6 N -0.69 -10.59 5.34 -14.25 -0.08 -10.67 16 7 C 0.69 13.72 8.36 -86.92 -0.73 13.00 16 8 O -0.58 -13.49 13.54 5.29 0.07 -13.42 16 9 N -0.71 -14.43 5.07 -59.82 -0.30 -14.73 16 10 C 0.26 6.24 2.14 -69.08 -0.15 6.09 16 11 H 0.04 1.11 6.23 -51.93 -0.32 0.79 16 12 C -0.16 -3.71 9.16 37.16 0.34 -3.37 16 13 C -0.62 -16.69 9.00 -34.44 -0.31 -17.00 16 14 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 15 C 0.04 1.11 5.29 -17.82 -0.09 1.01 16 16 N -0.90 -26.69 13.70 55.43 0.76 -25.93 16 17 Si 1.04 25.20 26.29 -169.99 -4.47 20.74 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.15 5.76 56.52 0.33 -5.82 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.19 -3.12 8.62 -39.22 -0.34 -3.46 16 22 C 0.18 2.62 6.68 -39.27 -0.26 2.36 16 23 O -0.31 -4.22 10.49 -19.41 -0.20 -4.42 16 24 C 0.03 0.23 9.81 101.05 0.99 1.22 16 25 C -0.32 -3.86 8.02 -39.25 -0.31 -4.18 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.41 4.76 8.84 -40.82 -0.36 4.39 16 31 H 0.39 6.90 8.54 -40.82 -0.35 6.55 16 32 H 0.06 1.48 4.88 -51.93 -0.25 1.23 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 36 H 0.15 2.95 6.34 -52.49 -0.33 2.62 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.13 1.20 4.52 -52.49 -0.24 0.96 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -33.64 331.95 -5.68 -39.32 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.21 Total: 8.90 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.05 Total: -1.07 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.38 Total: -51.33 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.34 Total: -21.55 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -4.47 Total: 20.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.64 -5.68 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152820728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.485 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds