Wall clock time and date at job start Tue Mar 31 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99925 * 2 1 4 4 C 1.38647 * 119.98965 * 180.02562 * 3 2 1 5 5 C 1.38819 * 119.98181 * 179.97438 * 4 3 2 6 6 N 1.39933 * 120.01440 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00000 * 143.57369 * 6 5 4 8 8 O 1.21589 * 119.99649 * 4.68194 * 7 6 5 9 9 N 1.34778 * 120.00037 * 184.68119 * 7 6 5 10 10 C 1.46495 * 119.99802 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47614 * 34.99764 * 10 9 7 12 12 C 1.53003 * 109.47010 * 274.99656 * 10 9 7 13 13 C 1.50700 * 109.47038 * 154.99932 * 10 9 7 14 14 H 1.07999 * 120.00082 * 5.56837 * 13 10 9 15 15 C 1.37881 * 120.00064 * 185.56492 * 13 10 9 16 16 N 1.31509 * 119.99985 * 197.30436 * 15 13 10 17 17 Si 1.86799 * 120.00032 * 17.58085 * 15 13 10 18 18 H 1.48492 * 109.47489 * 179.72458 * 17 15 13 19 19 H 1.48505 * 109.46994 * 299.72415 * 17 15 13 20 20 H 1.48503 * 109.46989 * 59.72080 * 17 15 13 21 21 C 1.38810 * 119.96791 * 0.27012 * 5 4 3 22 22 C 1.38647 * 119.98619 * 359.49605 * 21 5 4 23 23 O 1.35895 * 119.99048 * 180.22985 * 22 21 5 24 24 C 1.42901 * 116.99890 * 180.25555 * 23 22 21 25 25 C 1.38685 * 120.01695 * 0.48586 * 22 21 5 26 26 H 1.09000 * 109.46920 * 60.01025 * 1 2 3 27 27 H 1.08998 * 109.46819 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47091 * 300.00337 * 1 2 3 29 29 H 1.07996 * 120.01380 * 359.97088 * 4 3 2 30 30 H 0.96995 * 119.99774 * 323.58009 * 6 5 4 31 31 H 0.97003 * 119.99675 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47303 * 186.29608 * 12 10 9 33 33 H 1.09001 * 109.47080 * 306.29469 * 12 10 9 34 34 H 1.09004 * 109.47269 * 66.29746 * 12 10 9 35 35 H 0.97008 * 120.00125 * 355.01464 * 16 15 13 36 36 H 1.08002 * 120.00250 * 179.72599 * 21 5 4 37 37 H 1.09005 * 109.47289 * 179.97438 * 24 23 22 38 38 H 1.09002 * 109.47086 * 299.99790 * 24 23 22 39 39 H 1.09001 * 109.47487 * 59.99873 * 24 23 22 40 40 H 1.07997 * 119.98849 * 179.74604 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4305 1.2832 -0.0005 5 6 4.0606 2.5202 -0.0011 6 7 5.4580 2.5940 -0.0011 7 6 6.0814 3.5671 -0.6946 8 8 5.4300 4.4305 -1.2500 9 7 7.4268 3.5830 -0.7723 10 6 8.1044 4.6410 -1.5257 11 1 7.5512 5.5742 -1.4194 12 6 8.1700 4.2525 -3.0041 13 6 9.5019 4.8219 -0.9914 14 1 9.8817 4.1515 -0.2347 15 6 10.2956 5.8434 -1.4687 16 7 11.5960 5.8107 -1.2756 17 14 9.5229 7.2774 -2.3830 18 1 10.5823 8.2378 -2.7835 19 1 8.8268 6.7746 -3.5946 20 1 8.5451 7.9597 -1.4977 21 6 3.3038 3.6838 0.0046 22 6 1.9193 3.6100 0.0002 23 8 1.1783 4.7491 0.0011 24 6 -0.2428 4.5986 0.0021 25 6 1.2904 2.3739 0.0004 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0188 0.3775 -0.0005 30 1 5.9779 1.9448 0.4979 31 1 7.9464 2.8939 -0.3295 32 1 8.7703 4.9836 -3.5457 33 1 8.6242 3.2664 -3.1008 34 1 7.1623 4.2308 -3.4191 35 1 11.9887 5.1068 -0.7359 36 1 3.7934 4.6465 0.0087 37 1 -0.7124 5.5824 0.0031 38 1 -0.5506 4.0497 -0.8879 39 1 -0.5494 4.0492 0.8921 40 1 0.2120 2.3169 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152820728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:31 Heat of formation + Delta-G solvation = -97.475480 kcal Electronic energy + Delta-G solvation = -23346.427692 eV Core-core repulsion = 19740.474393 eV Total energy + Delta-G solvation = -3605.953299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.93838 -40.97981 -39.79452 -38.23421 -36.73798 -35.25056 -34.41300 -31.68743 -31.32389 -29.93058 -28.61524 -27.48640 -26.87216 -24.20050 -23.51115 -22.29534 -21.58762 -20.29972 -19.93037 -19.03741 -17.89155 -17.52272 -17.02189 -16.97365 -16.81736 -16.38823 -16.33456 -16.12582 -15.61074 -15.55785 -15.09349 -14.55195 -14.36595 -14.17698 -13.77616 -13.52966 -13.43757 -13.33770 -13.23537 -12.46043 -12.42453 -12.32983 -12.23790 -12.05569 -11.91649 -11.66990 -11.26067 -11.11718 -10.77018 -10.46747 -10.00748 -9.18872 -9.05833 -8.80446 -6.44605 0.18850 0.42362 1.46958 1.51023 1.53209 1.72549 2.04955 2.33384 2.37227 2.42045 2.72315 3.01405 3.33927 3.93551 3.95830 4.08588 4.24335 4.33532 4.37168 4.41605 4.42336 4.45691 4.52572 4.70589 4.72418 4.76185 4.78355 4.90758 5.06298 5.17212 5.23341 5.24499 5.43564 5.59090 5.60687 5.76386 5.99881 6.08854 6.20485 6.50249 6.52550 7.08085 7.28661 7.53816 8.59733 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.003396 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.536629 B = 8242.411333 C = 9009.271146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.182 3.818 4 C -0.219 4.219 5 C 0.237 3.763 6 N -0.674 5.674 7 C 0.695 3.305 8 O -0.615 6.615 9 N -0.710 5.710 10 C 0.262 3.738 11 H 0.023 0.977 12 C -0.154 4.154 13 C -0.613 4.613 14 H 0.043 0.957 15 C -0.003 4.003 16 N -0.926 5.926 17 Si 1.072 2.928 18 H -0.281 1.281 19 H -0.247 1.247 20 H -0.275 1.275 21 C -0.218 4.218 22 C 0.175 3.825 23 O -0.336 6.336 24 C 0.016 3.984 25 C -0.305 4.305 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.425 0.575 31 H 0.404 0.596 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.039 -11.798 3.861 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.135 3.865 4 C -0.241 4.241 5 C 0.141 3.859 6 N -0.323 5.323 7 C 0.396 3.604 8 O -0.495 6.495 9 N -0.362 5.362 10 C 0.157 3.843 11 H 0.041 0.959 12 C -0.212 4.212 13 C -0.651 4.651 14 H 0.061 0.939 15 C -0.204 4.204 16 N -0.561 5.561 17 Si 0.894 3.106 18 H -0.206 1.206 19 H -0.172 1.172 20 H -0.200 1.200 21 C -0.240 4.240 22 C 0.128 3.872 23 O -0.249 6.249 24 C -0.078 4.078 25 C -0.325 4.325 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.264 0.736 31 H 0.239 0.761 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -26.007 -9.614 2.518 27.841 hybrid contribution 0.401 -1.860 1.490 2.416 sum -25.606 -11.474 4.008 28.344 Atomic orbital electron populations 1.23423 0.76118 1.05919 1.02448 1.86070 1.23730 1.25737 1.88104 1.18310 0.91196 0.84328 0.92625 1.20000 0.92474 0.96643 1.14969 1.16782 0.81688 0.92339 0.95124 1.42405 1.04613 1.32856 1.52423 1.16173 0.82725 0.81942 0.79571 1.90880 1.65441 1.40236 1.52925 1.45259 1.03338 1.31816 1.55834 1.18648 0.90737 0.86150 0.88753 0.95888 1.22399 0.99451 1.01715 0.97682 1.22238 0.99155 1.17154 1.26591 0.93855 1.26787 0.94227 1.01692 0.97726 1.70983 1.11111 1.37247 1.36766 0.83692 0.75286 0.74082 0.77502 1.20641 1.17163 1.20049 1.20330 0.91663 0.99098 1.12922 1.18493 0.90125 0.85586 0.92952 1.86107 1.21423 1.29273 1.88143 1.23422 0.76103 1.05663 1.02607 1.21355 1.01763 0.90566 1.18799 0.91707 0.85869 0.91343 0.83071 0.73640 0.76092 0.92369 0.92807 0.94455 0.93184 0.86678 0.86389 0.91413 0.90939 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.08 10.49 -92.43 -0.97 -7.05 16 3 C 0.18 4.15 6.68 22.47 0.15 4.30 16 4 C -0.22 -5.50 9.90 22.51 0.22 -5.28 16 5 C 0.24 7.27 6.26 38.12 0.24 7.51 16 6 N -0.67 -20.45 5.34 -317.27 -1.69 -22.14 16 7 C 0.70 27.73 8.36 179.05 1.50 29.22 16 8 O -0.61 -29.40 13.54 -4.00 -0.05 -29.45 16 9 N -0.71 -28.78 5.07 -461.42 -2.34 -31.12 16 10 C 0.26 12.68 2.14 44.25 0.09 12.77 16 11 H 0.02 1.22 6.23 -2.39 -0.01 1.21 16 12 C -0.15 -6.92 9.16 71.98 0.66 -6.26 16 13 C -0.61 -33.47 9.00 25.60 0.23 -33.24 16 14 H 0.04 2.47 7.96 -2.91 -0.02 2.45 16 15 C 0.00 -0.19 5.29 84.66 0.45 0.26 16 16 N -0.93 -55.95 13.70 21.45 0.29 -55.65 16 17 Si 1.07 50.76 26.29 68.60 1.80 52.56 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.25 -10.70 5.76 99.48 0.57 -10.13 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 C -0.22 -7.54 8.62 22.50 0.19 -7.35 16 22 C 0.18 4.99 6.68 22.47 0.15 5.14 16 23 O -0.34 -8.94 10.49 -92.37 -0.97 -9.91 16 24 C 0.02 0.23 9.81 113.37 1.11 1.34 16 25 C -0.30 -6.62 8.02 22.48 0.18 -6.44 16 26 H 0.06 0.51 7.66 -2.39 -0.02 0.50 16 27 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.42 9.51 8.84 -92.71 -0.82 8.69 16 31 H 0.40 14.11 8.54 -92.71 -0.79 13.32 16 32 H 0.06 2.65 4.88 -2.39 -0.01 2.64 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.26 15.61 8.73 -92.70 -0.81 14.80 16 36 H 0.12 4.79 6.34 -2.91 -0.02 4.77 16 37 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 39 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 40 H 0.16 2.33 4.52 -2.91 -0.01 2.32 16 Total: -1.00 -74.42 331.95 1.67 -72.75 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.69 Total: 26.79 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 6.29 Total: 3.23 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -3.74 Total: -108.92 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.99 Total: -46.41 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 1.80 Total: 52.56 kcal Total: -74.42 1.67 -72.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152820728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.725 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds