Wall clock time and date at job start Tue Mar 31 2020 07:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36063 * 117.00106 * 2 1 4 4 C 1.38547 * 120.00607 * 359.97438 * 3 2 1 5 5 C 1.38199 * 120.06932 * 180.02562 * 4 3 2 6 6 C 1.38831 * 120.07603 * 0.02562 * 5 4 3 7 7 N 1.40139 * 119.99699 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00119 * 35.09343 * 7 6 5 9 9 O 1.21587 * 120.00010 * 355.39319 * 8 7 6 10 10 N 1.34770 * 119.99721 * 175.38687 * 8 7 6 11 11 C 1.46505 * 120.00161 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46788 * 325.00371 * 11 10 8 13 13 C 1.52996 * 109.46953 * 84.99808 * 11 10 8 14 14 C 1.50691 * 109.47372 * 205.00145 * 11 10 8 15 15 H 1.07999 * 120.00415 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00257 * 180.27298 * 14 11 10 17 17 N 1.31522 * 119.99826 * 359.72806 * 16 14 11 18 18 Si 1.86800 * 120.00461 * 179.72070 * 16 14 11 19 19 H 1.48501 * 109.46592 * 90.00112 * 18 16 14 20 20 H 1.48498 * 109.47429 * 210.00147 * 18 16 14 21 21 H 1.48499 * 109.47206 * 330.00361 * 18 16 14 22 22 C 1.38807 * 120.00670 * 0.25820 * 6 5 4 23 23 C 1.38516 * 119.92895 * 359.47077 * 22 6 5 24 24 O 1.35987 * 120.03373 * 180.28046 * 23 22 6 25 25 C 1.42899 * 117.00360 * 0.24815 * 24 23 22 26 26 H 1.09003 * 109.46773 * 59.99852 * 1 2 3 27 27 H 1.08991 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46722 * 300.00073 * 1 2 3 29 29 H 1.08004 * 119.96544 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.95952 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99495 * 215.09891 * 7 6 5 32 32 H 0.97002 * 120.00323 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47866 * 300.00118 * 13 11 10 34 34 H 1.08997 * 109.47341 * 60.00683 * 13 11 10 35 35 H 1.09005 * 109.46969 * 180.02562 * 13 11 10 36 36 H 0.96997 * 119.99972 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.03446 * 179.72675 * 22 6 5 38 38 H 1.09004 * 109.47090 * 300.00243 * 25 24 23 39 39 H 1.08992 * 109.47001 * 60.00105 * 25 24 23 40 40 H 1.08996 * 109.47424 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2924 2.3744 -0.0005 5 6 1.9185 3.6064 -0.0011 6 6 3.3047 3.6824 -0.0016 7 7 3.9378 4.9326 -0.0027 8 6 3.3905 5.9657 0.6678 9 8 2.3066 5.8370 1.2035 10 7 4.0448 7.1415 0.7446 11 6 3.4502 8.2644 1.4739 12 1 2.3677 8.2475 1.3471 13 6 3.7914 8.1448 2.9605 14 6 3.9990 9.5603 0.9352 15 1 4.7191 9.5487 0.1303 16 6 3.5866 10.7606 1.4738 17 7 2.7102 10.7748 2.4544 18 14 4.2728 12.3667 0.8113 19 1 3.4122 12.8527 -0.2970 20 1 4.2999 13.3790 1.8974 21 1 5.6517 12.1452 0.3066 22 6 4.0636 2.5202 -0.0070 23 6 3.4364 1.2852 -0.0008 24 8 4.1779 0.1453 -0.0003 25 6 5.5989 0.2956 -0.0009 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2138 2.3173 -0.0005 30 1 1.3286 4.5111 -0.0011 31 1 4.7699 5.0544 -0.4861 32 1 4.9094 7.2443 0.3170 33 1 3.3945 7.2075 3.3503 34 1 4.8739 8.1617 3.0874 35 1 3.3487 8.9801 3.5032 36 1 2.4203 11.6191 2.8336 37 1 5.1420 2.5788 -0.0119 38 1 5.9059 0.8442 -0.8914 39 1 5.9065 0.8453 0.8885 40 1 6.0684 -0.6881 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153402638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:35 Heat of formation + Delta-G solvation = -70.300196 kcal Electronic energy + Delta-G solvation = -23259.191106 eV Core-core repulsion = 19654.416217 eV Total energy + Delta-G solvation = -3604.774890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70539 -39.52906 -38.43755 -36.96234 -34.86390 -33.85752 -32.36804 -30.28770 -29.70902 -28.47293 -27.32235 -26.65303 -25.27064 -22.87993 -22.15020 -21.07293 -19.86882 -18.57979 -18.31546 -17.58533 -16.58485 -16.17472 -16.05349 -15.65333 -15.28840 -14.95575 -14.84193 -14.51646 -14.44233 -14.14701 -13.38499 -13.06044 -12.74164 -12.66024 -12.39675 -12.22449 -11.82466 -11.53097 -11.37314 -11.24705 -11.15096 -11.06649 -10.96621 -10.74118 -10.32940 -10.25457 -9.65297 -9.32861 -9.07709 -8.58509 -8.54616 -7.99881 -7.35402 -6.15096 -4.24457 1.30627 1.53764 3.08050 3.22743 3.24096 3.29451 3.30776 3.34777 3.61953 3.99494 4.30015 4.77225 4.87220 4.97734 4.98848 5.04221 5.10935 5.17515 5.23329 5.30602 5.36990 5.39390 5.43819 5.55176 5.85076 6.40485 6.42661 6.56058 6.78597 6.96101 6.99846 7.03985 7.10783 7.22680 7.43588 7.58607 7.59934 7.81035 7.97452 8.12943 8.70102 8.82266 9.21224 9.44067 10.90930 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029004 B = 0.003031 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.161477 B = 9236.932224 C = 9802.478805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.071 3.929 4 C -0.151 4.151 5 C -0.116 4.116 6 C 0.184 3.816 7 N -0.695 5.695 8 C 0.693 3.307 9 O -0.581 6.581 10 N -0.719 5.719 11 C 0.280 3.720 12 H 0.050 0.950 13 C -0.148 4.148 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.207 4.207 23 C 0.115 3.885 24 O -0.307 6.307 25 C 0.027 3.973 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.136 0.864 30 H 0.150 0.850 31 H 0.402 0.598 32 H 0.386 0.614 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -18.784 -6.320 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.026 3.974 4 C -0.170 4.170 5 C -0.136 4.136 6 C 0.088 3.912 7 N -0.343 5.343 8 C 0.393 3.607 9 O -0.459 6.459 10 N -0.370 5.370 11 C 0.179 3.821 12 H 0.068 0.932 13 C -0.207 4.207 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.229 4.229 23 C 0.069 3.931 24 O -0.221 6.221 25 C -0.069 4.069 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.236 0.764 32 H 0.218 0.782 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.543 -19.007 -5.640 19.886 hybrid contribution 1.251 1.383 -0.672 1.982 sum 2.795 -17.624 -6.311 18.927 Atomic orbital electron populations 1.23018 0.78967 1.03534 1.01284 1.86133 1.20663 1.26044 1.89675 1.18146 0.88969 0.85135 1.05170 1.20979 0.99909 0.90940 1.05214 1.21181 0.93326 0.98371 1.00764 1.17149 0.91438 0.83611 0.99050 1.42812 1.28010 1.08540 1.54963 1.16147 0.84515 0.80551 0.79448 1.90867 1.20820 1.82280 1.51921 1.45869 1.22787 1.11205 1.57104 1.18684 0.94986 0.80714 0.87741 0.93237 1.22107 0.98826 1.00276 0.99510 1.21205 1.26659 0.90209 1.19238 0.92072 1.24884 0.94843 0.99212 0.94755 1.69905 1.30781 1.26707 1.24612 0.86428 0.79276 0.82705 0.78555 1.20540 1.21049 1.19875 1.20681 0.99979 0.90144 1.12114 1.17813 0.88031 0.85325 1.01970 1.86156 1.18476 1.28184 1.89257 1.23035 0.78965 1.03583 1.01281 0.92845 0.88569 0.92753 0.84631 0.83278 0.76356 0.78171 0.96567 0.95527 0.89061 0.92519 0.84681 0.92805 0.92711 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.16 10.28 -34.54 -0.36 -4.51 16 3 C 0.07 1.02 6.70 -39.13 -0.26 0.76 16 4 C -0.15 -2.11 9.03 -39.48 -0.36 -2.46 16 5 C -0.12 -1.87 8.69 -39.38 -0.34 -2.21 16 6 C 0.18 2.83 6.30 -83.63 -0.53 2.30 16 7 N -0.69 -10.64 5.35 -14.20 -0.08 -10.71 16 8 C 0.69 13.90 8.37 -86.93 -0.73 13.17 16 9 O -0.58 -13.84 13.44 5.29 0.07 -13.77 16 10 N -0.72 -14.69 5.07 -59.82 -0.30 -14.99 16 11 C 0.28 7.06 2.56 -69.09 -0.18 6.88 16 12 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 13 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 14 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -24.63 11.31 55.43 0.63 -24.00 16 18 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C -0.21 -2.73 8.95 -39.27 -0.35 -3.08 16 23 C 0.11 1.61 6.70 -39.14 -0.26 1.34 16 24 O -0.31 -3.99 10.28 -34.30 -0.35 -4.34 16 25 C 0.03 0.22 9.81 101.05 0.99 1.22 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.14 1.56 6.29 -52.48 -0.33 1.23 16 30 H 0.15 2.72 6.21 -52.49 -0.33 2.40 16 31 H 0.40 4.67 8.84 -40.82 -0.36 4.31 16 32 H 0.39 6.68 8.56 -40.82 -0.35 6.33 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.14 1.41 6.30 -52.49 -0.33 1.08 16 38 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 39 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -32.64 335.89 -6.65 -39.29 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.23 Total: 9.41 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.07 Total: 3.22 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.25 Total: -49.71 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.64 Total: -22.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.64 -6.65 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153402638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.012 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds