Wall clock time and date at job start Tue Mar 31 2020 07:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36063 * 117.00106 * 2 1 4 4 C 1.38547 * 120.00607 * 359.97438 * 3 2 1 5 5 C 1.38199 * 120.06932 * 180.02562 * 4 3 2 6 6 C 1.38831 * 120.07603 * 0.02562 * 5 4 3 7 7 N 1.40139 * 119.99699 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00119 * 35.09343 * 7 6 5 9 9 O 1.21587 * 120.00010 * 355.39319 * 8 7 6 10 10 N 1.34770 * 119.99721 * 175.38687 * 8 7 6 11 11 C 1.46505 * 120.00161 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46788 * 325.00371 * 11 10 8 13 13 C 1.52996 * 109.46953 * 84.99808 * 11 10 8 14 14 C 1.50691 * 109.47372 * 205.00145 * 11 10 8 15 15 H 1.07999 * 120.00415 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00257 * 180.27298 * 14 11 10 17 17 N 1.31522 * 119.99826 * 359.72806 * 16 14 11 18 18 Si 1.86800 * 120.00461 * 179.72070 * 16 14 11 19 19 H 1.48501 * 109.46592 * 90.00112 * 18 16 14 20 20 H 1.48498 * 109.47429 * 210.00147 * 18 16 14 21 21 H 1.48499 * 109.47206 * 330.00361 * 18 16 14 22 22 C 1.38807 * 120.00670 * 0.25820 * 6 5 4 23 23 C 1.38516 * 119.92895 * 359.47077 * 22 6 5 24 24 O 1.35987 * 120.03373 * 180.28046 * 23 22 6 25 25 C 1.42899 * 117.00360 * 0.24815 * 24 23 22 26 26 H 1.09003 * 109.46773 * 59.99852 * 1 2 3 27 27 H 1.08991 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46722 * 300.00073 * 1 2 3 29 29 H 1.08004 * 119.96544 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.95952 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99495 * 215.09891 * 7 6 5 32 32 H 0.97002 * 120.00323 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47866 * 300.00118 * 13 11 10 34 34 H 1.08997 * 109.47341 * 60.00683 * 13 11 10 35 35 H 1.09005 * 109.46969 * 180.02562 * 13 11 10 36 36 H 0.96997 * 119.99972 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.03446 * 179.72675 * 22 6 5 38 38 H 1.09004 * 109.47090 * 300.00243 * 25 24 23 39 39 H 1.08992 * 109.47001 * 60.00105 * 25 24 23 40 40 H 1.08996 * 109.47424 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2924 2.3744 -0.0005 5 6 1.9185 3.6064 -0.0011 6 6 3.3047 3.6824 -0.0016 7 7 3.9378 4.9326 -0.0027 8 6 3.3905 5.9657 0.6678 9 8 2.3066 5.8370 1.2035 10 7 4.0448 7.1415 0.7446 11 6 3.4502 8.2644 1.4739 12 1 2.3677 8.2475 1.3471 13 6 3.7914 8.1448 2.9605 14 6 3.9990 9.5603 0.9352 15 1 4.7191 9.5487 0.1303 16 6 3.5866 10.7606 1.4738 17 7 2.7102 10.7748 2.4544 18 14 4.2728 12.3667 0.8113 19 1 3.4122 12.8527 -0.2970 20 1 4.2999 13.3790 1.8974 21 1 5.6517 12.1452 0.3066 22 6 4.0636 2.5202 -0.0070 23 6 3.4364 1.2852 -0.0008 24 8 4.1779 0.1453 -0.0003 25 6 5.5989 0.2956 -0.0009 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2138 2.3173 -0.0005 30 1 1.3286 4.5111 -0.0011 31 1 4.7699 5.0544 -0.4861 32 1 4.9094 7.2443 0.3170 33 1 3.3945 7.2075 3.3503 34 1 4.8739 8.1617 3.0874 35 1 3.3487 8.9801 3.5032 36 1 2.4203 11.6191 2.8336 37 1 5.1420 2.5788 -0.0119 38 1 5.9059 0.8442 -0.8914 39 1 5.9065 0.8453 0.8885 40 1 6.0684 -0.6881 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153402638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:34 Heat of formation + Delta-G solvation = -93.374273 kcal Electronic energy + Delta-G solvation = -23260.191674 eV Core-core repulsion = 19654.416217 eV Total energy + Delta-G solvation = -3605.775457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87115 -40.90976 -39.36890 -38.22737 -36.64885 -35.26180 -34.23365 -31.35638 -31.18101 -29.87241 -28.03539 -27.68423 -27.31049 -24.26945 -23.23490 -22.58254 -21.55396 -19.88998 -19.63212 -18.71438 -18.09698 -17.41534 -17.19484 -16.98283 -16.61257 -16.21012 -16.09751 -15.84081 -15.65844 -15.37519 -15.05164 -14.40054 -14.12966 -13.90959 -13.68435 -13.56915 -13.07129 -12.97371 -12.90227 -12.75631 -12.35235 -12.31936 -12.25591 -12.14939 -12.05042 -12.03208 -11.17201 -11.10037 -10.74488 -10.58987 -9.83571 -9.56601 -8.50817 -8.16747 -6.34093 0.21711 0.38584 1.46426 1.46995 1.57451 1.73004 2.16025 2.35757 2.39532 2.43716 2.75356 3.13955 3.43210 3.80925 4.07494 4.14803 4.26944 4.39474 4.43642 4.45838 4.49059 4.52498 4.69220 4.75961 4.77632 4.80567 4.93982 5.10295 5.25330 5.30480 5.34628 5.44981 5.60658 5.67262 5.79497 5.87035 6.10046 6.10642 6.26916 6.61137 6.73822 7.23893 7.34804 7.68064 8.89705 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029004 B = 0.003031 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.161477 B = 9236.932224 C = 9802.478805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.066 3.934 4 C -0.150 4.150 5 C -0.138 4.138 6 C 0.163 3.837 7 N -0.673 5.673 8 C 0.693 3.307 9 O -0.623 6.623 10 N -0.713 5.713 11 C 0.289 3.711 12 H 0.001 0.999 13 C -0.135 4.135 14 C -0.546 4.546 15 H 0.075 0.925 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.973 3.027 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.259 1.259 22 C -0.192 4.192 23 C 0.109 3.891 24 O -0.323 6.323 25 C 0.015 3.985 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.422 0.578 32 H 0.404 0.596 33 H 0.010 0.990 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.266 0.734 37 H 0.166 0.834 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -19.821 -7.471 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.020 3.980 4 C -0.169 4.169 5 C -0.159 4.159 6 C 0.067 3.933 7 N -0.323 5.323 8 C 0.393 3.607 9 O -0.504 6.504 10 N -0.366 5.366 11 C 0.185 3.815 12 H 0.019 0.981 13 C -0.194 4.194 14 C -0.584 4.584 15 H 0.093 0.907 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.798 3.202 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.183 1.183 22 C -0.213 4.213 23 C 0.062 3.938 24 O -0.237 6.237 25 C -0.079 4.079 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.139 0.861 31 H 0.260 0.740 32 H 0.239 0.761 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.184 0.816 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.599 -20.099 -6.838 21.533 hybrid contribution 0.585 1.509 -0.328 1.652 sum 4.184 -18.590 -7.165 20.358 Atomic orbital electron populations 1.23328 0.76868 1.05492 1.02006 1.86119 1.22913 1.25562 1.89457 1.18360 0.89582 0.85468 1.04548 1.21076 1.00927 0.90173 1.04739 1.21069 0.93950 0.98160 1.02739 1.17300 0.91417 0.83972 1.00622 1.42400 1.28364 1.07474 1.54035 1.16233 0.83957 0.81087 0.79408 1.90850 1.22762 1.83074 1.53706 1.45435 1.23466 1.10485 1.57169 1.18252 0.92476 0.82322 0.88423 0.98147 1.21927 0.99356 0.98903 0.99172 1.21535 1.26792 0.90571 1.19540 0.90668 1.25796 0.95018 1.02842 0.94907 1.70057 1.32049 1.27556 1.25912 0.85324 0.79097 0.78097 0.77677 1.20425 1.21048 1.18297 1.20831 1.01276 0.88830 1.10393 1.18023 0.88354 0.85987 1.01391 1.86150 1.20724 1.27800 1.88987 1.23385 0.76627 1.05552 1.02339 0.91777 0.86087 0.92352 0.82852 0.86138 0.73979 0.76067 0.97114 0.94055 0.91377 0.92528 0.81639 0.91249 0.92013 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.30 10.28 -80.30 -0.83 -9.12 16 3 C 0.07 1.84 6.70 22.56 0.15 1.99 16 4 C -0.15 -4.18 9.03 22.33 0.20 -3.98 16 5 C -0.14 -4.58 8.69 22.40 0.19 -4.39 16 6 C 0.16 4.90 6.30 38.09 0.24 5.14 16 7 N -0.67 -20.03 5.35 -317.11 -1.70 -21.72 16 8 C 0.69 28.08 8.37 179.06 1.50 29.58 16 9 O -0.62 -30.93 13.44 -3.99 -0.05 -30.98 16 10 N -0.71 -29.08 5.07 -461.43 -2.34 -31.42 16 11 C 0.29 14.85 2.56 44.24 0.11 14.97 16 12 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 13 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 14 C -0.55 -28.40 8.73 25.60 0.22 -28.17 16 15 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.01 0.77 5.30 84.65 0.45 1.22 16 17 N -0.92 -52.21 11.31 21.45 0.24 -51.97 16 18 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 C -0.19 -4.68 8.95 22.47 0.20 -4.48 16 23 C 0.11 2.87 6.70 22.56 0.15 3.03 16 24 O -0.32 -7.68 10.28 -79.44 -0.82 -8.49 16 25 C 0.02 0.21 9.81 113.37 1.11 1.32 16 26 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 27 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 29 H 0.15 3.50 6.29 -2.91 -0.02 3.49 16 30 H 0.12 4.69 6.21 -2.91 -0.02 4.68 16 31 H 0.42 8.92 8.84 -92.71 -0.82 8.10 16 32 H 0.40 13.41 8.56 -92.71 -0.79 12.62 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 3.78 6.06 -2.38 -0.01 3.76 16 36 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.17 2.88 6.30 -2.91 -0.02 2.86 16 38 H 0.07 0.75 7.65 -2.38 -0.02 0.73 16 39 H 0.06 0.78 7.67 -2.39 -0.02 0.76 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -72.44 335.89 2.33 -70.11 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.52 Total: 28.77 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.32 Total: 11.46 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.79 Total: -105.12 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -1.70 Total: -48.60 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -72.44 2.33 -70.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153402638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.261 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds