Wall clock time and date at job start Tue Mar 31 2020 07:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36068 * 117.00442 * 2 1 4 4 C 1.38549 * 119.99851 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.06488 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.07605 * 0.02562 * 5 4 3 7 7 N 1.40140 * 119.99495 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99932 * 326.68672 * 7 6 5 9 9 O 1.21589 * 120.00164 * 354.68766 * 8 7 6 10 10 N 1.34779 * 119.99643 * 174.68902 * 8 7 6 11 11 C 1.46506 * 119.99667 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47065 * 34.72890 * 11 10 8 13 13 C 1.52996 * 109.47049 * 274.71981 * 11 10 8 14 14 C 1.50702 * 109.46755 * 154.72430 * 11 10 8 15 15 H 1.07996 * 120.00553 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99839 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99935 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00136 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47201 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47362 * 119.99884 * 18 16 14 21 21 H 1.48506 * 109.47124 * 239.99999 * 18 16 14 22 22 C 1.38802 * 120.00616 * 0.24673 * 6 5 4 23 23 C 1.38514 * 119.93207 * 359.48024 * 22 6 5 24 24 O 1.35983 * 120.03678 * 180.27201 * 23 22 6 25 25 C 1.42900 * 117.00516 * 0.25140 * 24 23 22 26 26 H 1.09003 * 109.47076 * 59.99726 * 1 2 3 27 27 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46764 * 299.99747 * 1 2 3 29 29 H 1.08001 * 119.97321 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.96264 * 179.97438 * 5 4 3 31 31 H 0.97008 * 119.99783 * 146.69656 * 7 6 5 32 32 H 0.97002 * 120.00289 * 359.72193 * 10 8 7 33 33 H 1.09005 * 109.46762 * 179.97438 * 13 11 10 34 34 H 1.08991 * 109.47464 * 300.00275 * 13 11 10 35 35 H 1.09008 * 109.46960 * 60.00370 * 13 11 10 36 36 H 0.96999 * 120.00101 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.03219 * 179.72550 * 22 6 5 38 38 H 1.09005 * 109.47080 * 59.99199 * 25 24 23 39 39 H 1.08990 * 109.47776 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.46792 * 300.00475 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2923 2.3743 0.0005 5 6 1.9184 3.6063 0.0011 6 6 3.3046 3.6823 0.0005 7 7 3.9377 4.9326 0.0005 8 6 3.3717 5.9745 -0.6401 9 8 2.3630 5.8083 -1.2982 10 7 3.9239 7.2008 -0.5511 11 6 3.3083 8.3335 -1.2470 12 1 2.2247 8.2169 -1.2430 13 6 3.8112 8.3791 -2.6912 14 6 3.6783 9.6150 -0.5456 15 1 4.3085 9.5884 0.3310 16 6 3.2113 10.8215 -1.0225 17 7 2.4435 10.8540 -2.0897 18 14 3.6704 12.4101 -0.1536 19 1 4.5378 12.1039 1.0122 20 1 4.4006 13.2962 -1.0952 21 1 2.4372 13.0931 0.3135 22 6 4.0635 2.5202 -0.0057 23 6 3.4364 1.2852 -0.0005 24 8 4.1778 0.1452 -0.0010 25 6 5.5989 0.2955 -0.0015 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2138 2.3174 0.0014 30 1 1.3286 4.5111 0.0011 31 1 4.7835 5.0480 0.4615 32 1 4.7264 7.3342 -0.0227 33 1 3.3528 9.2217 -3.2091 34 1 4.8949 8.4957 -2.6951 35 1 3.5437 7.4521 -3.1985 36 1 2.1152 11.7027 -2.4254 37 1 5.1419 2.5788 -0.0106 38 1 5.9065 0.8446 0.8885 39 1 6.0683 -0.6881 -0.0014 40 1 5.9058 0.8450 -0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153402737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:37 Heat of formation + Delta-G solvation = -70.929298 kcal Electronic energy + Delta-G solvation = -23253.726252 eV Core-core repulsion = 19648.924082 eV Total energy + Delta-G solvation = -3604.802170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70779 -39.52927 -38.43765 -36.96724 -34.86487 -33.85573 -32.36727 -30.29861 -29.71004 -28.47289 -27.32229 -26.66303 -25.27356 -22.89901 -22.15721 -21.06093 -19.86273 -18.58853 -18.31402 -17.56974 -16.59042 -16.17743 -16.05148 -15.68017 -15.28772 -15.03809 -14.84216 -14.51912 -14.39631 -14.06081 -13.39504 -13.05026 -12.74910 -12.67428 -12.41476 -12.22094 -11.83849 -11.53410 -11.40014 -11.24655 -11.13598 -11.08421 -10.95141 -10.74680 -10.32648 -10.26458 -9.65660 -9.37651 -9.06458 -8.59615 -8.55271 -7.99118 -7.34495 -6.15422 -4.24646 1.30740 1.53014 3.07751 3.21759 3.23829 3.29623 3.31554 3.35201 3.60347 4.01799 4.29965 4.76361 4.87126 4.97076 4.98847 5.03959 5.11152 5.17351 5.22436 5.30360 5.36645 5.38163 5.43622 5.54781 5.84836 6.39016 6.40919 6.53855 6.78206 6.95522 6.99243 7.03251 7.10588 7.22267 7.42991 7.58485 7.60112 7.80794 7.97045 8.12514 8.70036 8.82122 9.20963 9.43923 10.90693 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.003034 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.034499 B = 9226.368812 C = 9758.348916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.070 3.930 4 C -0.149 4.149 5 C -0.116 4.116 6 C 0.187 3.813 7 N -0.695 5.695 8 C 0.692 3.308 9 O -0.580 6.580 10 N -0.719 5.719 11 C 0.280 3.720 12 H 0.050 0.950 13 C -0.148 4.148 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.209 4.209 23 C 0.116 3.884 24 O -0.307 6.307 25 C 0.027 3.973 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.402 0.598 32 H 0.386 0.614 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.136 0.864 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -18.843 5.818 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.025 3.975 4 C -0.168 4.168 5 C -0.137 4.137 6 C 0.091 3.909 7 N -0.343 5.343 8 C 0.393 3.607 9 O -0.458 6.458 10 N -0.370 5.370 11 C 0.178 3.822 12 H 0.068 0.932 13 C -0.207 4.207 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.230 4.230 23 C 0.070 3.930 24 O -0.221 6.221 25 C -0.069 4.069 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.162 0.838 31 H 0.236 0.764 32 H 0.218 0.782 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.153 0.847 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.112 -19.090 5.059 19.861 hybrid contribution 1.098 1.409 0.811 1.962 sum 3.210 -17.680 5.869 18.904 Atomic orbital electron populations 1.23018 0.78972 1.03535 1.01282 1.86132 1.20656 1.26023 1.89698 1.18127 0.88960 0.85124 1.05322 1.20946 0.99900 0.90892 1.05085 1.21027 0.93210 0.98247 1.01221 1.17136 0.91455 0.83659 0.98662 1.42854 1.26224 1.08007 1.57229 1.16155 0.83713 0.80780 0.80075 1.90892 1.26035 1.83556 1.45308 1.45877 1.30736 1.06827 1.53529 1.18695 0.94342 0.80616 0.88524 0.93222 1.22108 0.98971 1.00467 0.99174 1.21242 1.32610 0.90578 1.12798 0.92011 1.24886 0.94695 0.99175 0.94963 1.69914 1.33396 1.26305 1.22385 0.86377 0.78289 0.82874 0.79441 1.19755 1.20862 1.20852 1.20658 0.99988 0.90107 1.12289 1.17809 0.88029 0.85321 1.01844 1.86156 1.18480 1.28184 1.89236 1.23037 0.78963 1.03585 1.01285 0.92753 0.88568 0.92850 0.84613 0.83759 0.76358 0.78161 0.89077 0.95509 0.96579 0.92575 0.84673 0.92798 0.88434 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.16 10.28 -34.56 -0.36 -4.51 16 3 C 0.07 1.01 6.70 -39.13 -0.26 0.74 16 4 C -0.15 -2.08 9.03 -39.48 -0.36 -2.44 16 5 C -0.12 -1.88 8.65 -39.38 -0.34 -2.22 16 6 C 0.19 2.89 6.28 -83.63 -0.53 2.36 16 7 N -0.69 -10.65 5.35 -14.20 -0.08 -10.72 16 8 C 0.69 13.90 8.27 -86.92 -0.72 13.18 16 9 O -0.58 -13.90 13.68 5.29 0.07 -13.83 16 10 N -0.72 -14.68 5.07 -59.81 -0.30 -14.98 16 11 C 0.28 7.04 2.56 -69.08 -0.18 6.86 16 12 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 13 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 14 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.62 11.32 55.43 0.63 -23.99 16 18 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.21 -2.75 8.95 -39.27 -0.35 -3.10 16 23 C 0.12 1.62 6.70 -39.14 -0.26 1.36 16 24 O -0.31 -3.98 10.28 -34.29 -0.35 -4.33 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.14 1.56 6.29 -52.49 -0.33 1.23 16 30 H 0.14 2.63 6.40 -52.48 -0.34 2.30 16 31 H 0.40 4.66 8.84 -40.82 -0.36 4.30 16 32 H 0.39 6.68 8.56 -40.82 -0.35 6.33 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.14 1.41 6.30 -52.49 -0.33 1.08 16 38 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -32.74 336.19 -6.64 -39.39 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.24 Total: 9.26 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.06 Total: 3.30 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.25 Total: -49.70 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.64 Total: -22.67 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.74 -6.64 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153402737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.543 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds