Wall clock time and date at job start Tue Mar 31 2020 07:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36068 * 117.00442 * 2 1 4 4 C 1.38549 * 119.99851 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.06488 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.07605 * 0.02562 * 5 4 3 7 7 N 1.40140 * 119.99495 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99932 * 326.68672 * 7 6 5 9 9 O 1.21589 * 120.00164 * 354.68766 * 8 7 6 10 10 N 1.34779 * 119.99643 * 174.68902 * 8 7 6 11 11 C 1.46506 * 119.99667 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47065 * 34.72890 * 11 10 8 13 13 C 1.52996 * 109.47049 * 274.71981 * 11 10 8 14 14 C 1.50702 * 109.46755 * 154.72430 * 11 10 8 15 15 H 1.07996 * 120.00553 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99839 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99935 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00136 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47201 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47362 * 119.99884 * 18 16 14 21 21 H 1.48506 * 109.47124 * 239.99999 * 18 16 14 22 22 C 1.38802 * 120.00616 * 0.24673 * 6 5 4 23 23 C 1.38514 * 119.93207 * 359.48024 * 22 6 5 24 24 O 1.35983 * 120.03678 * 180.27201 * 23 22 6 25 25 C 1.42900 * 117.00516 * 0.25140 * 24 23 22 26 26 H 1.09003 * 109.47076 * 59.99726 * 1 2 3 27 27 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46764 * 299.99747 * 1 2 3 29 29 H 1.08001 * 119.97321 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.96264 * 179.97438 * 5 4 3 31 31 H 0.97008 * 119.99783 * 146.69656 * 7 6 5 32 32 H 0.97002 * 120.00289 * 359.72193 * 10 8 7 33 33 H 1.09005 * 109.46762 * 179.97438 * 13 11 10 34 34 H 1.08991 * 109.47464 * 300.00275 * 13 11 10 35 35 H 1.09008 * 109.46960 * 60.00370 * 13 11 10 36 36 H 0.96999 * 120.00101 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.03219 * 179.72550 * 22 6 5 38 38 H 1.09005 * 109.47080 * 59.99199 * 25 24 23 39 39 H 1.08990 * 109.47776 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.46792 * 300.00475 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2923 2.3743 0.0005 5 6 1.9184 3.6063 0.0011 6 6 3.3046 3.6823 0.0005 7 7 3.9377 4.9326 0.0005 8 6 3.3717 5.9745 -0.6401 9 8 2.3630 5.8083 -1.2982 10 7 3.9239 7.2008 -0.5511 11 6 3.3083 8.3335 -1.2470 12 1 2.2247 8.2169 -1.2430 13 6 3.8112 8.3791 -2.6912 14 6 3.6783 9.6150 -0.5456 15 1 4.3085 9.5884 0.3310 16 6 3.2113 10.8215 -1.0225 17 7 2.4435 10.8540 -2.0897 18 14 3.6704 12.4101 -0.1536 19 1 4.5378 12.1039 1.0122 20 1 4.4006 13.2962 -1.0952 21 1 2.4372 13.0931 0.3135 22 6 4.0635 2.5202 -0.0057 23 6 3.4364 1.2852 -0.0005 24 8 4.1778 0.1452 -0.0010 25 6 5.5989 0.2955 -0.0015 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2138 2.3174 0.0014 30 1 1.3286 4.5111 0.0011 31 1 4.7835 5.0480 0.4615 32 1 4.7264 7.3342 -0.0227 33 1 3.3528 9.2217 -3.2091 34 1 4.8949 8.4957 -2.6951 35 1 3.5437 7.4521 -3.1985 36 1 2.1152 11.7027 -2.4254 37 1 5.1419 2.5788 -0.0106 38 1 5.9065 0.8446 0.8885 39 1 6.0683 -0.6881 -0.0014 40 1 5.9058 0.8450 -0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153402737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:37 Heat of formation + Delta-G solvation = -94.144096 kcal Electronic energy + Delta-G solvation = -23254.732921 eV Core-core repulsion = 19648.924082 eV Total energy + Delta-G solvation = -3605.808839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87482 -40.91212 -39.36920 -38.23260 -36.65212 -35.26219 -34.23555 -31.37190 -31.17786 -29.87473 -28.03487 -27.69258 -27.31316 -24.28929 -23.24175 -22.57693 -21.54194 -19.89598 -19.64016 -18.70085 -18.08954 -17.44630 -17.20668 -16.98251 -16.67826 -16.21628 -16.09868 -15.78197 -15.59583 -15.37714 -15.06764 -14.41588 -14.12587 -13.90835 -13.70535 -13.58088 -13.06931 -12.98081 -12.90979 -12.74636 -12.37350 -12.32427 -12.27324 -12.13070 -12.04947 -12.03275 -11.22197 -11.08549 -10.75821 -10.60653 -9.84122 -9.56530 -8.49928 -8.17159 -6.34310 0.21681 0.37494 1.45691 1.46424 1.58197 1.72935 2.15243 2.35548 2.39537 2.43479 2.76235 3.13744 3.42602 3.80083 4.05928 4.14109 4.25938 4.39148 4.43695 4.45911 4.48690 4.52141 4.68811 4.75958 4.77633 4.80486 4.93812 5.10129 5.22338 5.29349 5.34232 5.44396 5.60446 5.66559 5.78445 5.86771 6.09808 6.10567 6.26687 6.61015 6.73827 7.23416 7.34610 7.67518 8.89577 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.003034 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.034499 B = 9226.368812 C = 9758.348916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.065 3.935 4 C -0.148 4.148 5 C -0.139 4.139 6 C 0.166 3.834 7 N -0.673 5.673 8 C 0.693 3.307 9 O -0.624 6.624 10 N -0.713 5.713 11 C 0.288 3.712 12 H 0.001 0.999 13 C -0.135 4.135 14 C -0.545 4.545 15 H 0.075 0.925 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.974 3.026 19 H -0.259 1.259 20 H -0.279 1.279 21 H -0.285 1.285 22 C -0.193 4.193 23 C 0.110 3.890 24 O -0.322 6.322 25 C 0.015 3.985 26 H 0.058 0.942 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.154 0.846 30 H 0.116 0.884 31 H 0.422 0.578 32 H 0.404 0.596 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.010 0.990 36 H 0.265 0.735 37 H 0.167 0.833 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -19.865 7.117 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.019 3.981 4 C -0.167 4.167 5 C -0.160 4.160 6 C 0.070 3.930 7 N -0.323 5.323 8 C 0.393 3.607 9 O -0.504 6.504 10 N -0.365 5.365 11 C 0.185 3.815 12 H 0.018 0.982 13 C -0.194 4.194 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.798 3.202 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.211 1.211 22 C -0.215 4.215 23 C 0.064 3.936 24 O -0.236 6.236 25 C -0.079 4.079 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.172 0.828 30 H 0.134 0.866 31 H 0.260 0.740 32 H 0.239 0.761 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.184 0.816 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.044 -20.167 6.406 21.543 hybrid contribution 0.479 1.529 0.410 1.654 sum 4.524 -18.638 6.815 20.354 Atomic orbital electron populations 1.23328 0.76878 1.05495 1.01998 1.86118 1.22900 1.25537 1.89478 1.18341 0.89577 0.85453 1.04692 1.21046 1.00918 0.90131 1.04615 1.20928 0.93835 0.98025 1.03218 1.17289 0.91428 0.84025 1.00237 1.42441 1.26602 1.06921 1.56322 1.16230 0.83175 0.81335 0.79930 1.90869 1.28016 1.84295 1.47229 1.45443 1.31291 1.06108 1.53702 1.18264 0.91868 0.82130 0.89263 0.98151 1.21928 0.99529 0.99122 0.98787 1.21561 1.32654 0.90918 1.13189 0.90699 1.25795 0.94495 1.02714 0.95576 1.70062 1.34454 1.27171 1.23887 0.85273 0.77914 0.78386 0.78595 1.18300 1.20473 1.21075 1.20815 1.01295 0.88798 1.10552 1.18018 0.88347 0.85982 1.01246 1.86150 1.20736 1.27790 1.88958 1.23388 0.76613 1.05561 1.02350 0.92359 0.86079 0.91788 0.82840 0.86642 0.73958 0.76057 0.91409 0.93983 0.97089 0.92532 0.81615 0.91245 0.86174 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.30 10.28 -80.35 -0.83 -9.12 16 3 C 0.07 1.81 6.70 22.56 0.15 1.96 16 4 C -0.15 -4.13 9.03 22.33 0.20 -3.93 16 5 C -0.14 -4.62 8.65 22.40 0.19 -4.42 16 6 C 0.17 5.01 6.28 38.09 0.24 5.25 16 7 N -0.67 -20.06 5.35 -317.10 -1.70 -21.75 16 8 C 0.69 28.12 8.27 179.06 1.48 29.60 16 9 O -0.62 -31.09 13.68 -4.00 -0.05 -31.15 16 10 N -0.71 -29.09 5.07 -461.41 -2.34 -31.43 16 11 C 0.29 14.82 2.56 44.24 0.11 14.94 16 12 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16 13 C -0.13 -6.81 9.26 71.98 0.67 -6.15 16 14 C -0.54 -28.35 8.73 25.60 0.22 -28.13 16 15 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 16 C 0.01 0.76 5.30 84.66 0.45 1.21 16 17 N -0.92 -52.19 11.32 21.45 0.24 -51.95 16 18 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 C -0.19 -4.71 8.95 22.47 0.20 -4.51 16 23 C 0.11 2.92 6.70 22.55 0.15 3.07 16 24 O -0.32 -7.66 10.28 -79.39 -0.82 -8.47 16 25 C 0.02 0.21 9.81 113.37 1.11 1.32 16 26 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 27 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 29 H 0.15 3.52 6.29 -2.91 -0.02 3.50 16 30 H 0.12 4.50 6.40 -2.91 -0.02 4.48 16 31 H 0.42 8.90 8.84 -92.70 -0.82 8.08 16 32 H 0.40 13.43 8.56 -92.71 -0.79 12.64 16 33 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.17 2.88 6.30 -2.91 -0.02 2.86 16 38 H 0.07 0.75 7.67 -2.38 -0.02 0.73 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.77 7.65 -2.39 -0.02 0.75 16 Total: -1.00 -72.70 336.19 2.31 -70.39 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.52 Total: 28.46 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.30 Total: 11.60 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.80 Total: -105.13 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.70 Total: -48.74 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -72.70 2.31 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153402737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.755 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds