Wall clock time and date at job start Tue Mar 31 2020 07:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35979 * 116.99971 * 2 1 4 4 C 1.38716 * 119.96685 * 0.02562 * 3 2 1 5 5 C 1.38192 * 120.10183 * 179.70080 * 4 3 2 6 6 C 1.38670 * 120.04181 * 0.54932 * 5 4 3 7 7 N 1.40370 * 120.03702 * 179.71991 * 6 5 4 8 8 C 1.34773 * 119.99673 * 335.23423 * 7 6 5 9 9 O 1.21597 * 120.00290 * 354.35480 * 8 7 6 10 10 N 1.34781 * 119.99704 * 174.35911 * 8 7 6 11 11 C 1.46498 * 119.99794 * 180.27235 * 10 8 7 12 12 H 1.08998 * 109.47678 * 34.72310 * 11 10 8 13 13 C 1.53004 * 109.47268 * 274.72110 * 11 10 8 14 14 C 1.50698 * 109.47116 * 154.72478 * 11 10 8 15 15 H 1.08009 * 120.00064 * 25.03471 * 14 11 10 16 16 C 1.37880 * 120.00237 * 205.04031 * 14 11 10 17 17 N 1.31516 * 120.00054 * 185.00529 * 16 14 11 18 18 Si 1.86800 * 119.99916 * 5.00373 * 16 14 11 19 19 H 1.48495 * 109.46877 * 94.96874 * 18 16 14 20 20 H 1.48496 * 109.47040 * 214.96700 * 18 16 14 21 21 H 1.48498 * 109.46940 * 334.96968 * 18 16 14 22 22 C 1.39278 * 119.93208 * 359.45092 * 6 5 4 23 23 O 1.35972 * 120.05250 * 180.29342 * 22 6 5 24 24 C 1.42897 * 117.00131 * 179.97438 * 23 22 6 25 25 C 1.38516 * 119.89418 * 0.27312 * 22 6 5 26 26 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47330 * 299.99688 * 1 2 3 28 28 H 1.08997 * 109.47239 * 59.99672 * 1 2 3 29 29 H 1.07996 * 119.94830 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.97755 * 180.29772 * 5 4 3 31 31 H 0.96997 * 119.99705 * 155.22428 * 7 6 5 32 32 H 0.96996 * 119.99998 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.46892 * 305.00673 * 13 11 10 34 34 H 1.08996 * 109.46687 * 65.00441 * 13 11 10 35 35 H 1.08998 * 109.47091 * 185.00453 * 13 11 10 36 36 H 0.96999 * 119.99679 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47529 * 180.02562 * 24 23 22 38 38 H 1.08997 * 109.47136 * 300.00448 * 24 23 22 39 39 H 1.09002 * 109.47320 * 60.00048 * 24 23 22 40 40 H 1.07998 * 120.01776 * 179.97438 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2901 2.3745 0.0005 5 6 1.9145 3.6073 0.0068 6 6 3.2991 3.6842 0.0010 7 7 3.9333 4.9365 0.0014 8 6 3.2900 6.0176 -0.4821 9 8 2.2028 5.8918 -1.0118 10 7 3.8520 7.2383 -0.3784 11 6 3.1502 8.4143 -0.8986 12 1 2.0768 8.2894 -0.7563 13 6 3.4521 8.5700 -2.3905 14 6 3.6149 9.6436 -0.1612 15 1 4.5911 9.6594 0.3009 16 6 2.7940 10.7482 -0.0762 17 7 3.2358 11.8545 0.4810 18 14 1.0544 10.6732 -0.7526 19 1 0.1122 10.3287 0.3422 20 1 0.6881 11.9941 -1.3237 21 1 0.9802 9.6372 -1.8139 22 6 4.0599 2.5176 0.0005 23 8 5.4177 2.5901 0.0009 24 6 6.1335 1.3534 0.0009 25 6 3.4312 1.2833 0.0000 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2117 2.3164 0.0005 30 1 1.3238 4.5114 0.0120 31 1 4.8343 5.0236 0.3498 32 1 4.7192 7.3387 0.0444 33 1 4.5311 8.6058 -2.5409 34 1 3.0372 7.7221 -2.9355 35 1 3.0032 9.4928 -2.7577 36 1 2.6584 12.6316 0.5404 37 1 7.2049 1.5536 0.0016 38 1 5.8705 0.7813 0.8906 39 1 5.8710 0.7816 -0.8893 40 1 4.0192 0.3775 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153510415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:49 Heat of formation + Delta-G solvation = -69.294303 kcal Electronic energy + Delta-G solvation = -23488.263982 eV Core-core repulsion = 19883.532711 eV Total energy + Delta-G solvation = -3604.731271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80981 -39.47447 -38.93980 -36.66645 -34.97785 -33.98077 -32.34696 -30.54785 -30.01217 -28.73533 -27.39297 -26.85413 -25.23711 -23.04820 -22.05607 -20.99928 -19.85554 -18.87025 -18.33005 -17.38182 -16.71685 -16.41588 -16.13169 -15.89397 -15.61439 -15.22664 -14.92649 -14.66788 -14.17051 -13.86852 -13.33257 -13.11469 -12.86265 -12.74082 -12.55552 -12.41674 -12.29183 -11.77262 -11.72470 -11.55527 -11.21030 -11.13835 -10.86593 -10.76886 -10.48930 -9.84165 -9.79881 -9.39394 -9.18456 -8.69008 -8.56855 -8.16319 -7.33695 -6.21566 -4.24266 1.36133 1.43145 3.00253 3.07715 3.26529 3.33745 3.36087 3.44020 3.54959 3.99042 4.34259 4.75165 4.80503 4.88819 4.92940 4.99476 5.00241 5.02113 5.17600 5.26090 5.28218 5.34524 5.46675 5.65184 5.88585 6.16771 6.36041 6.40403 6.51386 6.58238 6.71135 6.87547 6.90935 7.12557 7.18007 7.37269 7.43291 7.51388 7.59461 8.27840 8.67677 8.80031 9.14307 9.40640 10.90314 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.003702 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.333949 B = 7561.449480 C = 8530.894333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.132 3.868 4 C -0.217 4.217 5 C -0.060 4.060 6 C 0.125 3.875 7 N -0.682 5.682 8 C 0.695 3.305 9 O -0.590 6.590 10 N -0.713 5.713 11 C 0.250 3.750 12 H 0.050 0.950 13 C -0.150 4.150 14 C -0.532 4.532 15 H 0.079 0.921 16 C 0.080 3.920 17 N -0.890 5.890 18 Si 0.870 3.130 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.254 1.254 22 C 0.124 3.876 23 O -0.314 6.314 24 C 0.029 3.971 25 C -0.220 4.220 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.130 0.870 30 H 0.162 0.838 31 H 0.407 0.593 32 H 0.392 0.608 33 H 0.045 0.955 34 H 0.030 0.970 35 H 0.054 0.946 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -23.035 0.129 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.087 3.913 4 C -0.237 4.237 5 C -0.080 4.080 6 C 0.028 3.972 7 N -0.330 5.330 8 C 0.395 3.605 9 O -0.469 6.469 10 N -0.364 5.364 11 C 0.147 3.853 12 H 0.068 0.932 13 C -0.210 4.210 14 C -0.570 4.570 15 H 0.097 0.903 16 C -0.124 4.124 17 N -0.527 5.527 18 Si 0.697 3.303 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.178 1.178 22 C 0.076 3.924 23 O -0.227 6.227 24 C -0.066 4.066 25 C -0.240 4.240 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.179 0.821 31 H 0.242 0.758 32 H 0.225 0.775 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.126 -22.824 -0.312 22.826 hybrid contribution -0.221 0.042 0.063 0.234 sum -0.347 -22.781 -0.249 22.785 Atomic orbital electron populations 1.23031 0.78434 1.03586 1.01641 1.86015 1.21332 1.27040 1.89068 1.18588 0.91423 0.84130 0.97207 1.21079 1.00102 0.91525 1.10951 1.21246 0.92244 0.98973 0.95579 1.16824 0.91048 0.82293 1.07014 1.42583 1.19276 1.05467 1.65669 1.16150 0.84355 0.80724 0.79233 1.90805 1.21217 1.84874 1.50002 1.45745 1.23444 1.05050 1.62187 1.19046 0.93607 0.82018 0.90640 0.93181 1.22306 1.00458 0.99671 0.98517 1.21011 1.04288 0.96126 1.35547 0.90347 1.24867 0.98331 0.94984 0.94176 1.69887 1.36778 1.02452 1.43582 0.86946 0.84930 0.77987 0.80469 1.20096 1.21047 1.17807 1.18278 0.82366 0.91926 0.99831 1.86043 1.14943 1.32662 1.89092 1.23043 0.96642 0.85458 1.01435 1.20040 0.92547 0.96612 1.14811 0.88504 0.92578 0.92535 0.85199 0.82120 0.75764 0.77490 0.93615 0.95131 0.92734 0.92295 0.88237 0.92612 0.92601 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.71 10.50 -19.67 -0.21 -3.91 16 3 C 0.13 1.72 6.68 -39.24 -0.26 1.46 16 4 C -0.22 -2.94 9.03 -39.42 -0.36 -3.30 16 5 C -0.06 -0.96 8.71 -39.44 -0.34 -1.31 16 6 C 0.12 1.99 6.45 -83.40 -0.54 1.45 16 7 N -0.68 -11.09 5.30 -14.06 -0.07 -11.16 16 8 C 0.69 13.84 8.34 -86.92 -0.72 13.11 16 9 O -0.59 -13.47 13.17 5.28 0.07 -13.40 16 10 N -0.71 -14.48 5.07 -59.81 -0.30 -14.78 16 11 C 0.25 5.96 2.09 -69.08 -0.14 5.82 16 12 H 0.05 1.30 5.15 -51.93 -0.27 1.03 16 13 C -0.15 -3.36 9.05 37.16 0.34 -3.02 16 14 C -0.53 -14.26 9.06 -34.44 -0.31 -14.58 16 15 H 0.08 2.21 8.02 -52.48 -0.42 1.79 16 16 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 17 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 18 Si 0.87 21.29 26.34 -169.99 -4.48 16.81 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.25 -6.10 5.96 56.52 0.34 -5.76 16 22 C 0.12 1.70 6.70 -39.09 -0.26 1.44 16 23 O -0.31 -3.79 9.90 -19.65 -0.19 -3.98 16 24 C 0.03 0.23 9.81 101.05 0.99 1.22 16 25 C -0.22 -2.76 8.97 -39.32 -0.35 -3.12 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.13 1.47 6.28 -52.49 -0.33 1.14 16 30 H 0.16 2.92 5.78 -52.48 -0.30 2.62 16 31 H 0.41 5.57 8.36 -40.82 -0.34 5.23 16 32 H 0.39 6.99 8.58 -40.82 -0.35 6.64 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 1.22 6.89 -51.93 -0.36 0.87 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -32.74 331.49 -5.68 -38.41 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.18 Total: 9.92 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.07 Total: 2.54 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.40 Total: -51.37 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.33 Total: -21.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.48 Total: 16.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.74 -5.68 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153510415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.882 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds