Wall clock time and date at job start Tue Mar 31 2020 07:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35979 * 116.99971 * 2 1 4 4 C 1.38716 * 119.96685 * 0.02562 * 3 2 1 5 5 C 1.38192 * 120.10183 * 179.70080 * 4 3 2 6 6 C 1.38670 * 120.04181 * 0.54932 * 5 4 3 7 7 N 1.40370 * 120.03702 * 179.71991 * 6 5 4 8 8 C 1.34773 * 119.99673 * 335.23423 * 7 6 5 9 9 O 1.21597 * 120.00290 * 354.35480 * 8 7 6 10 10 N 1.34781 * 119.99704 * 174.35911 * 8 7 6 11 11 C 1.46498 * 119.99794 * 180.27235 * 10 8 7 12 12 H 1.08998 * 109.47678 * 34.72310 * 11 10 8 13 13 C 1.53004 * 109.47268 * 274.72110 * 11 10 8 14 14 C 1.50698 * 109.47116 * 154.72478 * 11 10 8 15 15 H 1.08009 * 120.00064 * 25.03471 * 14 11 10 16 16 C 1.37880 * 120.00237 * 205.04031 * 14 11 10 17 17 N 1.31516 * 120.00054 * 185.00529 * 16 14 11 18 18 Si 1.86800 * 119.99916 * 5.00373 * 16 14 11 19 19 H 1.48495 * 109.46877 * 94.96874 * 18 16 14 20 20 H 1.48496 * 109.47040 * 214.96700 * 18 16 14 21 21 H 1.48498 * 109.46940 * 334.96968 * 18 16 14 22 22 C 1.39278 * 119.93208 * 359.45092 * 6 5 4 23 23 O 1.35972 * 120.05250 * 180.29342 * 22 6 5 24 24 C 1.42897 * 117.00131 * 179.97438 * 23 22 6 25 25 C 1.38516 * 119.89418 * 0.27312 * 22 6 5 26 26 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47330 * 299.99688 * 1 2 3 28 28 H 1.08997 * 109.47239 * 59.99672 * 1 2 3 29 29 H 1.07996 * 119.94830 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.97755 * 180.29772 * 5 4 3 31 31 H 0.96997 * 119.99705 * 155.22428 * 7 6 5 32 32 H 0.96996 * 119.99998 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.46892 * 305.00673 * 13 11 10 34 34 H 1.08996 * 109.46687 * 65.00441 * 13 11 10 35 35 H 1.08998 * 109.47091 * 185.00453 * 13 11 10 36 36 H 0.96999 * 119.99679 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47529 * 180.02562 * 24 23 22 38 38 H 1.08997 * 109.47136 * 300.00448 * 24 23 22 39 39 H 1.09002 * 109.47320 * 60.00048 * 24 23 22 40 40 H 1.07998 * 120.01776 * 179.97438 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2901 2.3745 0.0005 5 6 1.9145 3.6073 0.0068 6 6 3.2991 3.6842 0.0010 7 7 3.9333 4.9365 0.0014 8 6 3.2900 6.0176 -0.4821 9 8 2.2028 5.8918 -1.0118 10 7 3.8520 7.2383 -0.3784 11 6 3.1502 8.4143 -0.8986 12 1 2.0768 8.2894 -0.7563 13 6 3.4521 8.5700 -2.3905 14 6 3.6149 9.6436 -0.1612 15 1 4.5911 9.6594 0.3009 16 6 2.7940 10.7482 -0.0762 17 7 3.2358 11.8545 0.4810 18 14 1.0544 10.6732 -0.7526 19 1 0.1122 10.3287 0.3422 20 1 0.6881 11.9941 -1.3237 21 1 0.9802 9.6372 -1.8139 22 6 4.0599 2.5176 0.0005 23 8 5.4177 2.5901 0.0009 24 6 6.1335 1.3534 0.0009 25 6 3.4312 1.2833 0.0000 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2117 2.3164 0.0005 30 1 1.3238 4.5114 0.0120 31 1 4.8343 5.0236 0.3498 32 1 4.7192 7.3387 0.0444 33 1 4.5311 8.6058 -2.5409 34 1 3.0372 7.7221 -2.9355 35 1 3.0032 9.4928 -2.7577 36 1 2.6584 12.6316 0.5404 37 1 7.2049 1.5536 0.0016 38 1 5.8705 0.7813 0.8906 39 1 5.8710 0.7816 -0.8893 40 1 4.0192 0.3775 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153510415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:48 Heat of formation + Delta-G solvation = -93.570625 kcal Electronic energy + Delta-G solvation = -23489.316682 eV Core-core repulsion = 19883.532711 eV Total energy + Delta-G solvation = -3605.783971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95481 -40.79425 -39.86031 -37.84571 -36.63797 -35.36220 -34.34583 -31.84050 -31.36188 -29.85305 -28.08316 -27.76513 -27.26163 -24.32248 -23.14415 -22.46283 -21.54571 -20.07243 -19.68245 -18.70242 -18.25914 -17.57239 -17.14912 -16.92694 -16.84176 -16.39478 -16.13601 -15.92070 -15.74696 -15.13163 -14.95273 -14.59059 -14.29657 -14.09207 -13.75194 -13.73351 -13.31949 -13.19496 -13.05560 -12.78196 -12.50389 -12.46122 -12.35024 -12.11855 -11.84230 -11.79797 -11.23577 -11.13876 -10.83249 -10.78117 -9.87491 -9.58646 -8.48447 -8.36723 -6.42530 0.30248 0.33648 1.31580 1.37291 1.49543 1.72070 2.12005 2.16538 2.30362 2.45243 2.77707 3.00236 3.38730 3.80580 4.02620 4.14464 4.24825 4.40687 4.42532 4.45304 4.47331 4.52555 4.61666 4.74322 4.77310 4.79631 4.81892 4.85015 5.05801 5.12646 5.34778 5.36212 5.40448 5.48730 5.69336 5.71572 5.97519 6.26477 6.31095 6.45383 6.61568 7.15180 7.24550 7.61270 8.78359 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.003702 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.333949 B = 7561.449480 C = 8530.894333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.138 3.862 4 C -0.221 4.221 5 C -0.077 4.077 6 C 0.091 3.909 7 N -0.667 5.667 8 C 0.696 3.304 9 O -0.620 6.620 10 N -0.713 5.713 11 C 0.256 3.744 12 H 0.032 0.968 13 C -0.144 4.144 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.032 3.968 17 N -0.932 5.932 18 Si 0.925 3.075 19 H -0.275 1.275 20 H -0.276 1.276 21 H -0.248 1.248 22 C 0.134 3.866 23 O -0.326 6.326 24 C 0.018 3.982 25 C -0.220 4.220 26 H 0.124 0.876 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.419 0.581 32 H 0.403 0.597 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.050 0.950 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -25.755 -0.279 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.092 3.908 4 C -0.240 4.240 5 C -0.098 4.098 6 C -0.005 4.005 7 N -0.316 5.316 8 C 0.396 3.604 9 O -0.502 6.502 10 N -0.365 5.365 11 C 0.151 3.849 12 H 0.050 0.950 13 C -0.203 4.203 14 C -0.567 4.567 15 H 0.074 0.926 16 C -0.168 4.168 17 N -0.570 5.570 18 Si 0.749 3.251 19 H -0.201 1.201 20 H -0.201 1.201 21 H -0.172 1.172 22 C 0.086 3.914 23 O -0.240 6.240 24 C -0.076 4.076 25 C -0.240 4.240 26 H 0.142 0.858 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.256 0.744 32 H 0.238 0.762 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.100 -25.602 -0.704 25.612 hybrid contribution -0.152 0.679 0.238 0.735 sum -0.252 -24.923 -0.466 24.929 Atomic orbital electron populations 1.23351 0.76482 1.05653 1.02182 1.86023 1.23340 1.26025 1.88605 1.18717 0.91796 0.84463 0.95842 1.21199 1.01137 0.90895 1.10774 1.21086 0.92502 0.99007 0.97162 1.17028 0.91408 0.82542 1.09504 1.42287 1.19503 1.04885 1.64897 1.16159 0.83999 0.81111 0.79113 1.90788 1.22614 1.85418 1.51377 1.45407 1.23812 1.04614 1.62688 1.18765 0.92733 0.81984 0.91373 0.95036 1.22196 1.01288 0.99625 0.97157 1.21190 1.03290 0.97238 1.34947 0.92576 1.25560 1.01803 0.94735 0.94710 1.69986 1.38270 1.03287 1.45505 0.86081 0.80669 0.78361 0.79992 1.20106 1.20119 1.17177 1.18235 0.83223 0.91398 0.98565 1.86037 1.14042 1.35184 1.88696 1.23396 0.97379 0.84265 1.02519 1.20332 0.92742 0.97073 1.13836 0.85777 0.91867 0.92167 0.83479 0.84812 0.74405 0.76160 0.92406 0.94683 0.93094 0.92041 0.86050 0.91258 0.91682 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.65 10.50 -93.31 -0.98 -7.63 16 3 C 0.14 3.31 6.68 22.49 0.15 3.46 16 4 C -0.22 -5.77 9.03 22.37 0.20 -5.57 16 5 C -0.08 -2.49 8.71 22.36 0.19 -2.30 16 6 C 0.09 2.86 6.45 38.13 0.25 3.10 16 7 N -0.67 -21.57 5.30 -316.67 -1.68 -23.25 16 8 C 0.70 27.86 8.34 179.05 1.49 29.35 16 9 O -0.62 -28.79 13.17 -4.02 -0.05 -28.84 16 10 N -0.71 -28.99 5.07 -461.40 -2.34 -31.33 16 11 C 0.26 12.21 2.09 44.25 0.09 12.30 16 12 H 0.03 1.64 5.15 -2.39 -0.01 1.63 16 13 C -0.14 -6.31 9.05 71.98 0.65 -5.65 16 14 C -0.53 -28.68 9.06 25.60 0.23 -28.45 16 15 H 0.06 3.24 8.02 -2.91 -0.02 3.21 16 16 C 0.03 1.80 5.47 84.66 0.46 2.27 16 17 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 18 Si 0.92 44.14 26.34 68.60 1.81 45.95 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.25 -11.52 5.96 99.48 0.59 -10.93 16 22 C 0.13 3.47 6.70 22.59 0.15 3.62 16 23 O -0.33 -7.17 9.90 -93.24 -0.92 -8.09 16 24 C 0.02 0.23 9.81 113.37 1.11 1.34 16 25 C -0.22 -4.99 8.97 22.44 0.20 -4.79 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 28 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 29 H 0.15 3.16 6.28 -2.91 -0.02 3.14 16 30 H 0.13 5.07 5.78 -2.91 -0.02 5.05 16 31 H 0.42 11.22 8.36 -92.71 -0.77 10.45 16 32 H 0.40 14.37 8.58 -92.71 -0.80 13.57 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 2.24 6.89 -2.39 -0.02 2.22 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 39 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 40 H 0.16 2.75 6.30 -2.91 -0.02 2.73 16 Total: -1.00 -70.72 331.49 1.84 -68.87 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.59 Total: 29.66 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.30 Total: 10.02 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.72 Total: -109.94 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.96 Total: -44.56 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.81 Total: 45.95 kcal Total: -70.72 1.84 -68.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153510415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.697 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds