Wall clock time and date at job start Tue Mar 31 2020 07:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46992 * 2 1 4 4 C 1.50698 * 109.46958 * 120.00119 * 2 1 3 5 5 H 1.08002 * 120.00423 * 92.57950 * 4 2 1 6 6 C 1.37878 * 119.99970 * 272.57366 * 4 2 1 7 7 N 1.31513 * 120.00438 * 174.17983 * 6 4 2 8 8 Si 1.86800 * 119.99869 * 354.18550 * 6 4 2 9 9 H 1.48502 * 109.47263 * 274.22904 * 8 6 4 10 10 H 1.48499 * 109.47369 * 34.22894 * 8 6 4 11 11 H 1.48500 * 109.47337 * 154.22993 * 8 6 4 12 12 N 1.46898 * 109.47274 * 239.99986 * 2 1 3 13 13 C 1.46895 * 111.00080 * 183.95645 * 12 2 1 14 14 C 1.46897 * 111.00226 * 59.99978 * 12 2 1 15 15 C 1.52999 * 109.47478 * 190.00192 * 14 12 2 16 16 O 1.42904 * 109.47151 * 64.99763 * 15 14 12 17 17 C 1.35892 * 116.99878 * 179.97438 * 16 15 14 18 18 C 1.38736 * 120.05795 * 359.72497 * 17 16 15 19 19 C 1.38150 * 119.94373 * 179.76696 * 18 17 16 20 20 C 1.38265 * 120.05245 * 0.50741 * 19 18 17 21 21 N 1.48004 * 119.94176 * 179.72080 * 20 19 18 22 22 O 1.21801 * 120.00214 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00079 * 0.02704 * 21 20 19 24 24 C 1.38263 * 120.11718 * 359.74624 * 20 19 18 25 25 C 1.38149 * 120.05209 * 359.97438 * 24 20 19 26 26 H 1.08995 * 109.47374 * 292.85238 * 1 2 3 27 27 H 1.08996 * 109.47381 * 52.85762 * 1 2 3 28 28 H 1.09007 * 109.47213 * 172.85232 * 1 2 3 29 29 H 0.97001 * 120.00460 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47728 * 59.99723 * 13 12 2 31 31 H 1.09003 * 109.47109 * 180.02562 * 13 12 2 32 32 H 1.09004 * 109.47289 * 299.99707 * 13 12 2 33 33 H 1.09012 * 109.46919 * 310.00105 * 14 12 2 34 34 H 1.08997 * 109.47047 * 69.99683 * 14 12 2 35 35 H 1.08994 * 109.47067 * 184.99923 * 15 14 12 36 36 H 1.08999 * 109.47020 * 305.00028 * 15 14 12 37 37 H 1.07994 * 120.02548 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.97101 * 180.23300 * 19 18 17 39 39 H 1.07994 * 119.97692 * 180.02562 * 24 20 19 40 40 H 1.08003 * 120.02143 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2520 -1.7672 1.1921 6 6 2.2115 -0.0113 2.4052 7 7 2.5392 -0.6500 3.5072 8 14 1.9886 1.8431 2.4318 9 1 3.2591 2.5002 2.0325 10 1 0.9134 2.2262 1.4818 11 1 1.6162 2.2774 3.8022 12 7 2.0197 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4211 15 6 1.8627 -0.9044 -3.6341 16 8 1.1118 -2.1174 -3.5514 17 6 1.2758 -3.0144 -4.5590 18 6 2.1372 -2.7305 -5.6087 19 6 2.3058 -3.6461 -6.6294 20 6 1.6088 -4.8401 -6.6106 21 7 1.7866 -5.8166 -7.7084 22 8 1.1728 -6.8686 -7.6932 23 8 2.5467 -5.5683 -8.6272 24 6 0.7457 -5.1232 -5.5682 25 6 0.5780 -4.2134 -4.5423 26 1 -0.3634 0.3991 0.9469 27 1 -0.3634 0.6205 -0.8191 28 1 -0.3634 -1.0197 -0.1279 29 1 2.6650 -0.1582 4.3337 30 1 3.8030 -1.3532 -0.3066 31 1 3.8209 -1.3109 -2.0862 32 1 3.9187 0.2051 -1.1591 33 1 0.4722 0.1323 -2.3564 34 1 2.0519 0.9345 -2.5280 35 1 1.5943 -0.3724 -4.5468 36 1 2.9276 -1.1366 -3.6487 37 1 2.6788 -1.7963 -5.6259 38 1 2.9791 -3.4272 -7.4449 39 1 0.2028 -6.0567 -5.5556 40 1 -0.0966 -4.4348 -3.7285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161980346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:11 Heat of formation + Delta-G solvation = -4.460081 kcal Electronic energy + Delta-G solvation = -23070.317789 eV Core-core repulsion = 19468.397940 eV Total energy + Delta-G solvation = -3601.919848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.26741 -40.58308 -38.25146 -37.00351 -36.65728 -32.97196 -31.88402 -31.45398 -30.54823 -29.11554 -26.33721 -25.71306 -24.60211 -23.59387 -22.53862 -21.45543 -19.53160 -19.47079 -18.74950 -18.48519 -17.62353 -17.09583 -16.44686 -16.16951 -15.32087 -15.04673 -14.44330 -14.36583 -14.17057 -13.93054 -13.60160 -13.22340 -12.92268 -12.72553 -12.51424 -12.10908 -11.80670 -11.66851 -11.44883 -11.38174 -11.30804 -11.25747 -11.10136 -10.92916 -10.64671 -10.38020 -10.27951 -9.83206 -9.78426 -9.18239 -8.95068 -8.66975 -7.50541 -6.17457 -4.16327 -0.25050 0.63185 1.23154 1.31720 2.80214 3.02241 3.16816 3.27062 3.27319 4.06463 4.16784 4.30484 4.38125 4.46661 4.61986 4.83836 4.89433 5.03296 5.13853 5.17460 5.26996 5.34714 5.47871 5.62030 5.66969 5.86031 5.88462 5.92279 6.13188 6.26838 6.29802 6.47543 6.52374 6.75029 6.85856 6.96400 7.18743 7.52150 7.54164 7.79816 7.94241 8.54238 8.92602 9.45391 10.95442 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036387 B = 0.002772 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.315479 B =10098.249587 C =10263.571527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.870 3.130 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.287 1.287 12 N -0.525 5.525 13 C 0.035 3.965 14 C 0.043 3.957 15 C 0.058 3.942 16 O -0.272 6.272 17 C 0.198 3.802 18 C -0.218 4.218 19 C -0.010 4.010 20 C -0.098 4.098 21 N 0.039 4.961 22 O -0.171 6.171 23 O -0.175 6.175 24 C -0.014 4.014 25 C -0.153 4.153 26 H 0.049 0.951 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.265 0.735 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -1.586 -18.528 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.076 3.924 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.204 1.204 10 H -0.189 1.189 11 H -0.213 1.213 12 N -0.249 5.249 13 C -0.113 4.113 14 C -0.085 4.085 15 C -0.017 4.017 16 O -0.182 6.182 17 C 0.148 3.852 18 C -0.237 4.237 19 C -0.029 4.029 20 C -0.182 4.182 21 N 0.555 4.445 22 O -0.385 6.385 23 O -0.388 6.388 24 C -0.033 4.033 25 C -0.172 4.172 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.384 -1.557 -17.597 17.826 hybrid contribution 0.542 1.763 -0.242 1.860 sum -1.843 0.206 -17.838 17.934 Atomic orbital electron populations 1.22034 0.97864 1.00519 0.98846 1.19711 0.92218 0.91969 0.88552 0.98373 1.20867 1.43892 0.97695 0.91855 0.90048 1.24963 0.94662 0.97870 0.95492 1.69887 1.47802 1.35819 0.99813 0.86988 0.78987 0.86818 0.77452 1.20439 1.18914 1.21313 1.62117 1.09905 1.51862 1.01061 1.22261 0.87967 0.99288 1.01772 1.22243 1.02555 0.93606 0.90124 1.23254 0.95824 0.83082 0.99517 1.86370 1.62902 1.27870 1.41075 1.19564 0.90027 0.89457 0.86137 1.21318 1.04299 1.02423 0.95661 1.20776 0.94658 0.89583 0.97920 1.20918 1.10318 0.93607 0.93328 1.43534 0.98494 1.01160 1.01304 1.94526 1.46849 1.13070 1.84075 1.94519 1.33531 1.82966 1.27792 1.20825 0.93121 0.99736 0.89613 1.20521 1.03889 0.91983 1.00843 0.93150 0.96158 0.92525 0.92531 0.89463 0.93947 0.96940 0.89408 0.93301 0.91646 0.91122 0.83230 0.82972 0.82473 0.82473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.43 37.16 0.31 -2.41 16 2 C 0.18 4.01 1.61 -68.87 -0.11 3.89 16 3 H 0.00 -0.03 5.71 -51.93 -0.30 -0.33 16 4 C -0.50 -13.34 7.57 -34.44 -0.26 -13.60 16 5 H 0.08 2.40 7.82 -52.49 -0.41 1.99 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -26.30 13.96 55.43 0.77 -25.53 16 8 Si 0.87 20.47 26.37 -169.99 -4.48 15.99 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.26 -5.91 6.39 56.52 0.36 -5.55 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.52 -9.82 4.57 -236.29 -1.08 -10.90 16 13 C 0.04 0.62 9.06 60.06 0.54 1.17 16 14 C 0.04 0.62 5.16 -3.83 -0.02 0.60 16 15 C 0.06 0.64 4.80 37.16 0.18 0.82 16 16 O -0.27 -3.45 10.08 -19.40 -0.20 -3.65 16 17 C 0.20 2.10 6.69 -39.21 -0.26 1.84 16 18 C -0.22 -1.93 9.04 -39.43 -0.36 -2.29 16 19 C -0.01 -0.09 9.55 -39.60 -0.38 -0.47 16 20 C -0.10 -1.05 6.85 -79.94 -0.55 -1.60 16 21 N 0.04 0.50 4.45 33.97 0.15 0.65 16 22 O -0.17 -2.30 18.44 -29.46 -0.54 -2.85 16 23 O -0.17 -2.34 18.44 -29.46 -0.54 -2.89 16 24 C -0.01 -0.13 9.55 -39.61 -0.38 -0.51 16 25 C -0.15 -1.50 9.99 -39.43 -0.39 -1.89 16 26 H 0.05 1.07 7.24 -51.93 -0.38 0.69 16 27 H 0.02 0.34 6.59 -51.93 -0.34 0.00 16 28 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.09 1.79 6.83 -51.93 -0.35 1.44 16 31 H 0.04 0.62 6.21 -51.93 -0.32 0.29 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 1.26 5.98 -51.92 -0.31 0.95 16 34 H 0.05 0.65 8.12 -51.93 -0.42 0.22 16 35 H 0.07 0.53 7.65 -51.93 -0.40 0.13 16 36 H 0.07 0.73 5.79 -51.93 -0.30 0.43 16 37 H 0.15 1.01 6.30 -52.49 -0.33 0.68 16 38 H 0.15 1.16 7.60 -52.49 -0.40 0.76 16 39 H 0.16 1.24 7.60 -52.49 -0.40 0.84 16 40 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -30.41 332.79 -7.78 -38.19 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.10 Total: -1.48 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.77 Total: -12.57 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.16 Total: -35.77 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.28 Total: -9.38 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.48 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.41 -7.78 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161980346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.728 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds