Wall clock time and date at job start Tue Mar 31 2020 07:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46992 * 2 1 4 4 C 1.50698 * 109.46958 * 120.00119 * 2 1 3 5 5 H 1.08002 * 120.00423 * 92.57950 * 4 2 1 6 6 C 1.37878 * 119.99970 * 272.57366 * 4 2 1 7 7 N 1.31513 * 120.00438 * 174.17983 * 6 4 2 8 8 Si 1.86800 * 119.99869 * 354.18550 * 6 4 2 9 9 H 1.48502 * 109.47263 * 274.22904 * 8 6 4 10 10 H 1.48499 * 109.47369 * 34.22894 * 8 6 4 11 11 H 1.48500 * 109.47337 * 154.22993 * 8 6 4 12 12 N 1.46898 * 109.47274 * 239.99986 * 2 1 3 13 13 C 1.46895 * 111.00080 * 183.95645 * 12 2 1 14 14 C 1.46897 * 111.00226 * 59.99978 * 12 2 1 15 15 C 1.52999 * 109.47478 * 190.00192 * 14 12 2 16 16 O 1.42904 * 109.47151 * 64.99763 * 15 14 12 17 17 C 1.35892 * 116.99878 * 179.97438 * 16 15 14 18 18 C 1.38736 * 120.05795 * 359.72497 * 17 16 15 19 19 C 1.38150 * 119.94373 * 179.76696 * 18 17 16 20 20 C 1.38265 * 120.05245 * 0.50741 * 19 18 17 21 21 N 1.48004 * 119.94176 * 179.72080 * 20 19 18 22 22 O 1.21801 * 120.00214 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00079 * 0.02704 * 21 20 19 24 24 C 1.38263 * 120.11718 * 359.74624 * 20 19 18 25 25 C 1.38149 * 120.05209 * 359.97438 * 24 20 19 26 26 H 1.08995 * 109.47374 * 292.85238 * 1 2 3 27 27 H 1.08996 * 109.47381 * 52.85762 * 1 2 3 28 28 H 1.09007 * 109.47213 * 172.85232 * 1 2 3 29 29 H 0.97001 * 120.00460 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47728 * 59.99723 * 13 12 2 31 31 H 1.09003 * 109.47109 * 180.02562 * 13 12 2 32 32 H 1.09004 * 109.47289 * 299.99707 * 13 12 2 33 33 H 1.09012 * 109.46919 * 310.00105 * 14 12 2 34 34 H 1.08997 * 109.47047 * 69.99683 * 14 12 2 35 35 H 1.08994 * 109.47067 * 184.99923 * 15 14 12 36 36 H 1.08999 * 109.47020 * 305.00028 * 15 14 12 37 37 H 1.07994 * 120.02548 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.97101 * 180.23300 * 19 18 17 39 39 H 1.07994 * 119.97692 * 180.02562 * 24 20 19 40 40 H 1.08003 * 120.02143 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2520 -1.7672 1.1921 6 6 2.2115 -0.0113 2.4052 7 7 2.5392 -0.6500 3.5072 8 14 1.9886 1.8431 2.4318 9 1 3.2591 2.5002 2.0325 10 1 0.9134 2.2262 1.4818 11 1 1.6162 2.2774 3.8022 12 7 2.0197 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4211 15 6 1.8627 -0.9044 -3.6341 16 8 1.1118 -2.1174 -3.5514 17 6 1.2758 -3.0144 -4.5590 18 6 2.1372 -2.7305 -5.6087 19 6 2.3058 -3.6461 -6.6294 20 6 1.6088 -4.8401 -6.6106 21 7 1.7866 -5.8166 -7.7084 22 8 1.1728 -6.8686 -7.6932 23 8 2.5467 -5.5683 -8.6272 24 6 0.7457 -5.1232 -5.5682 25 6 0.5780 -4.2134 -4.5423 26 1 -0.3634 0.3991 0.9469 27 1 -0.3634 0.6205 -0.8191 28 1 -0.3634 -1.0197 -0.1279 29 1 2.6650 -0.1582 4.3337 30 1 3.8030 -1.3532 -0.3066 31 1 3.8209 -1.3109 -2.0862 32 1 3.9187 0.2051 -1.1591 33 1 0.4722 0.1323 -2.3564 34 1 2.0519 0.9345 -2.5280 35 1 1.5943 -0.3724 -4.5468 36 1 2.9276 -1.1366 -3.6487 37 1 2.6788 -1.7963 -5.6259 38 1 2.9791 -3.4272 -7.4449 39 1 0.2028 -6.0567 -5.5556 40 1 -0.0966 -4.4348 -3.7285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161980346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:11 Heat of formation + Delta-G solvation = -23.713573 kcal Electronic energy + Delta-G solvation = -23071.152683 eV Core-core repulsion = 19468.397940 eV Total energy + Delta-G solvation = -3602.754742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19519 -41.39867 -39.30012 -38.23980 -37.63099 -34.80608 -32.85968 -32.38286 -31.90453 -30.32079 -27.60349 -26.99859 -26.10080 -24.52557 -23.45173 -22.60342 -20.99787 -20.35660 -19.69985 -19.33670 -19.04812 -18.56159 -17.49403 -17.04957 -16.59270 -16.03189 -15.91656 -15.57377 -15.09085 -14.90597 -14.72950 -14.50463 -14.28625 -14.01256 -13.90237 -13.27770 -13.11969 -12.82247 -12.72225 -12.66323 -12.47202 -12.32007 -12.27517 -12.27511 -12.20201 -11.90432 -11.74014 -11.54509 -11.02963 -10.73931 -10.48792 -9.74990 -8.94954 -8.27879 -6.30503 -1.15369 -0.06662 0.35190 0.45011 1.31909 1.34578 1.44515 1.99982 2.27524 2.33267 3.03364 3.24740 3.36642 3.49219 3.63689 3.85213 4.00207 4.12495 4.25149 4.26268 4.45019 4.45684 4.57317 4.64920 4.68210 4.73354 4.75807 4.82802 4.88903 4.94641 4.96610 5.12040 5.17126 5.29617 5.37897 5.49360 5.71963 6.05694 6.17466 6.40166 6.53658 6.71077 6.79521 7.35408 8.89146 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036387 B = 0.002772 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.315479 B =10098.249587 C =10263.571527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.184 3.816 3 H 0.000 1.000 4 C -0.499 4.499 5 H 0.033 0.967 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.935 3.065 9 H -0.271 1.271 10 H -0.240 1.240 11 H -0.290 1.290 12 N -0.541 5.541 13 C 0.040 3.960 14 C 0.040 3.960 15 C 0.058 3.942 16 O -0.297 6.297 17 C 0.189 3.811 18 C -0.207 4.207 19 C -0.007 4.007 20 C -0.111 4.111 21 N 0.040 4.960 22 O -0.194 6.194 23 O -0.186 6.186 24 C -0.012 4.012 25 C -0.159 4.159 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.017 0.983 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.178 0.822 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 0.739 -20.820 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.017 0.983 4 C -0.538 4.538 5 H 0.051 0.949 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.759 3.241 9 H -0.196 1.196 10 H -0.163 1.163 11 H -0.216 1.216 12 N -0.266 5.266 13 C -0.108 4.108 14 C -0.088 4.088 15 C -0.016 4.016 16 O -0.208 6.208 17 C 0.140 3.860 18 C -0.226 4.226 19 C -0.026 4.026 20 C -0.196 4.196 21 N 0.552 4.448 22 O -0.404 6.404 23 O -0.399 6.399 24 C -0.031 4.031 25 C -0.178 4.178 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.195 0.805 38 H 0.187 0.813 39 H 0.186 0.814 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.694 0.740 -19.940 20.134 hybrid contribution 0.647 0.964 0.443 1.243 sum -2.047 1.704 -19.497 19.678 Atomic orbital electron populations 1.21914 0.96395 1.00774 0.99638 1.19557 0.93232 0.91404 0.88199 0.98298 1.21079 1.42809 0.95806 0.94105 0.94914 1.25822 0.94696 1.03037 0.94971 1.70055 1.50310 1.37945 1.00684 0.85935 0.79853 0.80515 0.77761 1.19628 1.16296 1.21628 1.61961 1.10295 1.52611 1.01752 1.22175 0.87756 0.99313 1.01534 1.22377 1.02583 0.94904 0.88948 1.23315 0.96232 0.82624 0.99419 1.86329 1.63584 1.28719 1.42133 1.19727 0.90661 0.89330 0.86317 1.21544 1.03472 1.03122 0.94424 1.21024 0.94326 0.88814 0.98462 1.21142 1.11533 0.93854 0.93049 1.43821 0.98079 1.01318 1.01602 1.94516 1.47435 1.13972 1.84516 1.94498 1.33797 1.83044 1.28540 1.20948 0.92837 1.00144 0.89144 1.20644 1.04106 0.92034 1.00999 0.94454 0.92439 0.93377 0.92643 0.93692 0.90444 0.96448 0.89391 0.91445 0.87675 0.90214 0.80500 0.81272 0.81438 0.81952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 8.43 71.98 0.61 -4.37 16 2 C 0.18 7.85 1.61 44.17 0.07 7.92 16 3 H 0.00 -0.02 5.71 -2.39 -0.01 -0.03 16 4 C -0.50 -27.11 7.57 25.60 0.19 -26.91 16 5 H 0.03 2.04 7.82 -2.91 -0.02 2.02 16 6 C 0.01 0.66 5.47 84.66 0.46 1.13 16 7 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 8 Si 0.94 41.94 26.37 68.60 1.81 43.75 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.24 -9.71 6.39 99.48 0.64 -9.07 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 N -0.54 -19.30 4.57 -901.49 -4.12 -23.42 16 13 C 0.04 1.38 9.06 127.69 1.16 2.54 16 14 C 0.04 0.97 5.16 86.30 0.45 1.42 16 15 C 0.06 1.03 4.80 71.98 0.35 1.37 16 16 O -0.30 -6.62 10.08 -92.33 -0.93 -7.55 16 17 C 0.19 3.48 6.69 22.51 0.15 3.63 16 18 C -0.21 -2.89 9.04 22.37 0.20 -2.69 16 19 C -0.01 -0.11 9.55 22.26 0.21 0.10 16 20 C -0.11 -2.22 6.85 36.39 0.25 -1.97 16 21 N 0.04 1.00 4.45 -46.44 -0.21 0.80 16 22 O -0.19 -5.20 18.44 18.88 0.35 -4.85 16 23 O -0.19 -4.83 18.44 18.88 0.35 -4.48 16 24 C -0.01 -0.21 9.55 22.25 0.21 0.01 16 25 C -0.16 -2.84 9.99 22.37 0.22 -2.61 16 26 H 0.04 1.51 7.24 -2.39 -0.02 1.49 16 27 H 0.06 1.78 6.59 -2.39 -0.02 1.76 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.04 1.89 6.83 -2.39 -0.02 1.88 16 31 H 0.08 2.05 6.21 -2.39 -0.01 2.04 16 32 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.09 2.16 5.98 -2.38 -0.01 2.14 16 34 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 35 H 0.11 1.07 7.65 -2.39 -0.02 1.05 16 36 H 0.08 1.25 5.79 -2.39 -0.01 1.24 16 37 H 0.18 1.46 6.30 -2.91 -0.02 1.44 16 38 H 0.17 2.03 7.60 -2.91 -0.02 2.01 16 39 H 0.17 2.51 7.60 -2.91 -0.02 2.49 16 40 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -68.96 332.79 3.07 -65.90 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.99 Total: 7.94 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.53 Total: -20.45 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -4.03 Total: -80.26 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.23 Total: -16.88 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.81 Total: 43.75 kcal Total: -68.96 3.07 -65.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161980346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.183 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds