Wall clock time and date at job start Tue Mar 31 2020 07:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.53000 * 109.47060 * 295.00551 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 C 1.38269 * 119.98202 * 269.71894 * 6 5 4 8 8 C 1.38231 * 120.04718 * 179.72530 * 7 6 5 9 9 C 1.38213 * 120.02303 * 0.55405 * 8 7 6 10 10 C 1.38436 * 119.97983 * 359.72396 * 9 8 7 11 11 F 1.35099 * 120.03052 * 180.02562 * 10 9 8 12 12 C 1.38167 * 119.98864 * 90.00072 * 6 5 4 13 13 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 14 14 O 1.20836 * 119.99512 * 239.99645 * 13 2 1 15 15 O 1.34220 * 120.00563 * 59.99764 * 13 2 1 16 16 C 1.45201 * 117.00173 * 179.97438 * 15 13 2 17 17 C 1.52995 * 109.47301 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47430 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99937 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00453 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00205 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46952 * 60.00509 * 22 20 18 24 24 H 1.48508 * 109.47186 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47293 * 300.00333 * 22 20 18 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 30 30 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 1.08001 * 119.97692 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.98400 * 180.27797 * 8 7 6 35 35 H 1.08005 * 120.01113 * 179.74618 * 9 8 7 36 36 H 1.08003 * 120.01520 * 359.97319 * 12 6 5 37 37 H 1.08995 * 109.47307 * 299.99829 * 16 15 13 38 38 H 1.09010 * 109.46899 * 59.99985 * 16 15 13 39 39 H 1.08995 * 109.47658 * 300.00117 * 17 16 15 40 40 H 1.09007 * 109.46974 * 59.99903 * 17 16 15 41 41 H 0.96998 * 120.00064 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 0.0690 2.4953 6 6 2.1381 -0.6411 3.7257 7 6 1.3433 -1.5822 4.3538 8 6 1.8055 -2.2384 5.4792 9 6 3.0584 -1.9461 5.9845 10 6 3.8527 -1.0000 5.3598 11 9 5.0777 -0.7139 5.8525 12 6 3.3908 -0.3473 4.2291 13 6 2.0323 -0.7103 -1.2305 14 8 2.7271 -1.6927 -1.1196 15 8 1.7081 -0.2518 -2.4496 16 6 2.2277 -0.9856 -3.5896 17 6 1.7556 -0.3192 -4.8834 18 6 2.2955 -1.0804 -6.0666 19 1 2.9132 -1.9527 -5.9114 20 6 2.0008 -0.6635 -7.3474 21 7 1.2490 0.3989 -7.5364 22 14 2.6706 -1.6067 -8.8140 23 1 2.1765 -3.0064 -8.7699 24 1 2.2122 -0.9599 -10.0698 25 1 4.1549 -1.6041 -8.7684 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1264 -0.7993 1.2056 30 1 1.6054 -1.7197 1.2951 31 1 2.0697 1.0676 2.4494 32 1 0.5489 0.1472 2.5389 33 1 0.3622 -1.8076 3.9625 34 1 1.1857 -2.9765 5.9663 35 1 3.4177 -2.4561 6.8662 36 1 4.0098 0.3908 3.7407 37 1 3.3172 -0.9844 -3.5566 38 1 1.8643 -2.0128 -3.5568 39 1 0.6662 -0.3207 -4.9163 40 1 2.1187 0.7081 -4.9164 41 1 1.0420 0.6925 -8.4375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174014328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:22 Heat of formation + Delta-G solvation = -141.843662 kcal Electronic energy + Delta-G solvation = -22116.564598 eV Core-core repulsion = 18488.767389 eV Total energy + Delta-G solvation = -3627.797209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.17229 -40.20013 -39.48971 -36.61621 -35.53162 -33.36783 -32.60450 -30.87340 -30.25977 -28.59336 -25.77866 -25.00438 -23.18293 -23.00352 -21.42532 -20.83448 -19.75959 -17.74720 -17.22126 -16.71592 -16.50154 -16.25399 -16.00078 -15.88366 -15.80581 -14.93042 -14.56408 -14.43983 -13.91749 -13.76154 -13.35916 -13.17046 -12.87730 -12.83189 -12.41963 -12.33309 -12.09999 -11.81889 -11.71814 -11.42181 -11.20450 -11.07518 -10.97142 -10.87281 -10.73345 -10.67757 -10.12291 -9.64041 -9.59539 -9.32179 -9.27623 -8.97901 -8.44839 -6.11113 -4.15529 0.81961 0.86570 2.58718 3.11016 3.28908 3.29527 3.33588 3.38133 3.89991 4.27611 4.38093 4.40822 4.63817 4.72410 4.79061 4.85204 4.92003 4.98538 5.12773 5.21712 5.25298 5.31333 5.46903 5.55286 5.68821 5.71139 5.74673 5.76473 5.82812 5.97377 6.07542 6.09204 6.11426 6.15303 6.23013 6.56510 6.63631 7.01858 7.55100 7.61533 7.86084 8.19216 8.27374 8.89763 9.48800 11.00326 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033690 B = 0.002184 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.917298 B =12818.666862 C =13163.297801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.107 0.893 4 C -0.099 4.099 5 C -0.084 4.084 6 C -0.048 4.048 7 C -0.127 4.127 8 C -0.089 4.089 9 C -0.162 4.162 10 C 0.099 3.901 11 F -0.141 7.141 12 C -0.151 4.151 13 C 0.457 3.543 14 O -0.519 6.519 15 O -0.356 6.356 16 C 0.075 3.925 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -0.503 26.957 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.125 0.875 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.048 4.048 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.181 4.181 10 C 0.080 3.920 11 F -0.120 7.120 12 C -0.170 4.170 13 C 0.300 3.700 14 O -0.408 6.408 15 O -0.272 6.272 16 C 0.002 3.998 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.529 5.529 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.307 -0.671 26.803 26.843 hybrid contribution 0.764 -0.581 -0.811 1.257 sum -0.543 -1.252 25.991 26.027 Atomic orbital electron populations 1.21827 0.92119 1.03022 1.03445 1.21024 0.98338 1.00944 0.90089 0.87481 1.21463 1.02345 0.99181 0.90693 1.20744 1.01899 0.98726 0.90761 1.19751 0.93061 0.95970 0.96000 1.21173 1.00509 0.96748 0.96092 1.21016 0.94895 0.98891 0.95884 1.21145 0.95523 0.99387 1.02004 1.17723 0.81260 0.98021 0.94999 1.91504 1.40739 1.92588 1.87154 1.21088 0.97294 1.02303 0.96331 1.23551 0.77627 0.82970 0.85873 1.90628 1.36131 1.26286 1.87781 1.86516 1.69327 1.56249 1.15107 1.23628 0.98043 0.95252 0.82872 1.19156 0.97798 0.96795 0.87445 1.20947 1.32456 1.12773 0.90361 0.92344 1.24984 0.94988 0.95113 0.99074 1.69963 1.36846 1.23965 1.22077 0.86528 0.79398 0.79976 0.81365 1.20068 1.21113 1.20062 0.91155 0.90728 0.92093 0.90639 0.90699 0.90276 0.89834 0.85172 0.84999 0.84928 0.84653 0.92406 0.92410 0.95379 0.95387 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.88 37.16 0.33 -1.10 16 2 C -0.08 -0.97 2.83 -91.77 -0.26 -1.23 16 3 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 4 C -0.10 -1.00 4.01 -26.73 -0.11 -1.11 16 5 C -0.08 -0.61 5.10 -27.88 -0.14 -0.76 16 6 C -0.05 -0.39 5.13 -104.63 -0.54 -0.93 16 7 C -0.13 -0.94 9.70 -39.57 -0.38 -1.33 16 8 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 9 C -0.16 -1.30 10.03 -39.52 -0.40 -1.69 16 10 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 11 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 12 C -0.15 -1.37 9.68 -39.51 -0.38 -1.75 16 13 C 0.46 7.78 7.26 36.00 0.26 8.04 16 14 O -0.52 -10.21 15.67 -18.76 -0.29 -10.50 16 15 O -0.36 -7.04 10.12 -39.23 -0.40 -7.44 16 16 C 0.07 1.67 5.40 37.16 0.20 1.87 16 17 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 18 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 27 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.87 7.96 -51.93 -0.41 0.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.08 0.49 6.51 -51.93 -0.34 0.15 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.06 1.29 8.13 -51.92 -0.42 0.86 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -32.03 354.98 -8.37 -40.40 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.12 Total: -3.76 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.66 Total: -13.40 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.69 Total: -17.94 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.03 -8.37 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174014328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.441 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds