Wall clock time and date at job start Tue Mar 31 2020 07:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.53000 * 109.47060 * 295.00551 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 C 1.38269 * 119.98202 * 269.71894 * 6 5 4 8 8 C 1.38231 * 120.04718 * 179.72530 * 7 6 5 9 9 C 1.38213 * 120.02303 * 0.55405 * 8 7 6 10 10 C 1.38436 * 119.97983 * 359.72396 * 9 8 7 11 11 F 1.35099 * 120.03052 * 180.02562 * 10 9 8 12 12 C 1.38167 * 119.98864 * 90.00072 * 6 5 4 13 13 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 14 14 O 1.20836 * 119.99512 * 239.99645 * 13 2 1 15 15 O 1.34220 * 120.00563 * 59.99764 * 13 2 1 16 16 C 1.45201 * 117.00173 * 179.97438 * 15 13 2 17 17 C 1.52995 * 109.47301 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47430 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99937 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00453 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00205 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46952 * 60.00509 * 22 20 18 24 24 H 1.48508 * 109.47186 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47293 * 300.00333 * 22 20 18 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 30 30 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 1.08001 * 119.97692 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.98400 * 180.27797 * 8 7 6 35 35 H 1.08005 * 120.01113 * 179.74618 * 9 8 7 36 36 H 1.08003 * 120.01520 * 359.97319 * 12 6 5 37 37 H 1.08995 * 109.47307 * 299.99829 * 16 15 13 38 38 H 1.09010 * 109.46899 * 59.99985 * 16 15 13 39 39 H 1.08995 * 109.47658 * 300.00117 * 17 16 15 40 40 H 1.09007 * 109.46974 * 59.99903 * 17 16 15 41 41 H 0.96998 * 120.00064 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 0.0690 2.4953 6 6 2.1381 -0.6411 3.7257 7 6 1.3433 -1.5822 4.3538 8 6 1.8055 -2.2384 5.4792 9 6 3.0584 -1.9461 5.9845 10 6 3.8527 -1.0000 5.3598 11 9 5.0777 -0.7139 5.8525 12 6 3.3908 -0.3473 4.2291 13 6 2.0323 -0.7103 -1.2305 14 8 2.7271 -1.6927 -1.1196 15 8 1.7081 -0.2518 -2.4496 16 6 2.2277 -0.9856 -3.5896 17 6 1.7556 -0.3192 -4.8834 18 6 2.2955 -1.0804 -6.0666 19 1 2.9132 -1.9527 -5.9114 20 6 2.0008 -0.6635 -7.3474 21 7 1.2490 0.3989 -7.5364 22 14 2.6706 -1.6067 -8.8140 23 1 2.1765 -3.0064 -8.7699 24 1 2.2122 -0.9599 -10.0698 25 1 4.1549 -1.6041 -8.7684 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1264 -0.7993 1.2056 30 1 1.6054 -1.7197 1.2951 31 1 2.0697 1.0676 2.4494 32 1 0.5489 0.1472 2.5389 33 1 0.3622 -1.8076 3.9625 34 1 1.1857 -2.9765 5.9663 35 1 3.4177 -2.4561 6.8662 36 1 4.0098 0.3908 3.7407 37 1 3.3172 -0.9844 -3.5566 38 1 1.8643 -2.0128 -3.5568 39 1 0.6662 -0.3207 -4.9163 40 1 2.1187 0.7081 -4.9164 41 1 1.0420 0.6925 -8.4375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174014328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:21 Heat of formation + Delta-G solvation = -157.297893 kcal Electronic energy + Delta-G solvation = -22117.234744 eV Core-core repulsion = 18488.767389 eV Total energy + Delta-G solvation = -3628.467355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.90484 -41.58938 -40.14489 -37.98227 -36.62777 -35.45717 -33.37757 -32.24757 -31.45705 -29.32796 -27.29117 -26.27907 -24.30748 -23.64096 -22.86973 -22.06172 -20.90097 -18.97888 -18.37161 -18.02230 -17.64561 -17.34077 -17.20071 -17.04075 -16.60686 -16.49021 -15.91046 -15.16485 -15.02648 -14.59947 -14.52273 -14.37038 -14.16447 -13.80905 -13.62732 -13.34473 -13.13078 -13.01539 -12.70536 -12.60092 -12.58897 -12.50368 -12.47884 -12.14804 -11.83718 -11.67788 -11.62085 -11.51640 -11.45578 -11.18086 -10.61834 -9.89032 -9.60247 -8.27969 -6.41354 0.20519 0.27358 1.20570 1.40132 1.43734 1.51583 1.79166 2.39459 2.64793 3.06113 3.27066 3.56524 3.69432 3.83734 3.93809 4.01159 4.17445 4.20140 4.22876 4.31044 4.37109 4.43175 4.48915 4.52374 4.68187 4.75566 4.93679 4.95907 4.99997 5.04475 5.15690 5.20377 5.26384 5.32014 5.40926 5.41965 5.45391 5.57671 5.62051 5.74441 5.98491 6.05576 6.70583 6.77049 7.28300 8.84315 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033690 B = 0.002184 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.917298 B =12818.666862 C =13163.297801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 H 0.130 0.870 4 C -0.092 4.092 5 C -0.075 4.075 6 C -0.057 4.057 7 C -0.129 4.129 8 C -0.090 4.090 9 C -0.167 4.167 10 C 0.071 3.929 11 F -0.154 7.154 12 C -0.164 4.164 13 C 0.451 3.549 14 O -0.548 6.548 15 O -0.364 6.364 16 C 0.090 3.910 17 C 0.032 3.968 18 C -0.553 4.553 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.925 5.925 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.267 1.267 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -0.975 27.835 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 H 0.148 0.852 4 C -0.130 4.130 5 C -0.112 4.112 6 C -0.058 4.058 7 C -0.147 4.147 8 C -0.107 4.107 9 C -0.186 4.186 10 C 0.052 3.948 11 F -0.133 7.133 12 C -0.183 4.183 13 C 0.296 3.704 14 O -0.438 6.438 15 O -0.280 6.280 16 C 0.016 3.984 17 C -0.005 4.005 18 C -0.590 4.590 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.564 5.564 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.150 -1.141 27.706 27.813 hybrid contribution 1.002 -0.434 -0.999 1.480 sum -1.148 -1.575 26.707 26.778 Atomic orbital electron populations 1.21870 0.90310 1.03251 1.04699 1.21238 0.99625 1.01348 0.87279 0.85242 1.21394 1.01027 0.99219 0.91323 1.20711 1.03327 0.98552 0.88614 1.19902 0.92868 0.96510 0.96478 1.21525 1.01268 0.95963 0.95910 1.21374 0.94618 0.99029 0.95719 1.21416 0.95848 0.98913 1.02375 1.18044 0.81340 0.99401 0.95973 1.91463 1.41593 1.92850 1.87405 1.21250 0.97966 1.02643 0.96465 1.24811 0.76726 0.82814 0.86030 1.90612 1.37508 1.27821 1.87904 1.86518 1.69591 1.56181 1.15716 1.23118 0.97673 0.94789 0.82781 1.18961 0.96301 0.95828 0.89422 1.21345 1.32922 1.13283 0.91488 0.91883 1.25961 0.95031 0.96004 1.02266 1.70082 1.37837 1.25429 1.23078 0.85384 0.78967 0.78700 0.77307 1.19066 1.20353 1.19134 0.87279 0.92093 0.92422 0.92569 0.91498 0.89078 0.87512 0.83018 0.82339 0.83606 0.84514 0.92590 0.92499 0.97411 0.97522 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.88 71.98 0.64 -1.80 16 2 C -0.08 -1.60 2.83 -11.54 -0.03 -1.63 16 3 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 4 C -0.09 -1.70 4.01 30.59 0.12 -1.57 16 5 C -0.08 -0.88 5.10 29.85 0.15 -0.73 16 6 C -0.06 -0.84 5.13 -19.87 -0.10 -0.94 16 7 C -0.13 -1.57 9.70 22.28 0.22 -1.36 16 8 C -0.09 -1.05 10.04 22.26 0.22 -0.82 16 9 C -0.17 -2.48 10.03 22.31 0.22 -2.26 16 10 C 0.07 1.35 7.30 22.38 0.16 1.52 16 11 F -0.15 -3.35 17.27 44.97 0.78 -2.58 16 12 C -0.16 -2.88 9.68 22.31 0.22 -2.66 16 13 C 0.45 15.23 7.26 71.24 0.52 15.75 16 14 O -0.55 -21.68 15.67 21.94 0.34 -21.33 16 15 O -0.36 -14.53 10.12 -51.32 -0.52 -15.05 16 16 C 0.09 4.10 5.40 71.98 0.39 4.49 16 17 C 0.03 1.73 5.35 29.85 0.16 1.89 16 18 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 19 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.01 0.37 5.46 84.65 0.46 0.84 16 21 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 22 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H 0.11 1.02 6.56 -2.39 -0.02 1.00 16 27 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.11 0.78 6.51 -2.39 -0.02 0.76 16 33 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 38 H 0.06 2.58 8.13 -2.38 -0.02 2.56 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -70.53 354.98 7.50 -63.02 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.01 Total: 5.93 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.58 Total: -20.64 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.18 Total: -36.38 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.53 7.50 -63.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174014328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.274 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds