Wall clock time and date at job start Tue Mar 31 2020 06:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 H 1.08997 * 109.47011 * 55.00289 * 3 2 1 5 5 C 1.50696 * 109.46962 * 175.00053 * 3 2 1 6 6 H 1.08008 * 119.99909 * 120.00007 * 5 3 2 7 7 C 1.37877 * 120.00177 * 300.00323 * 5 3 2 8 8 N 1.31512 * 119.99996 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99952 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47483 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47348 * 120.00019 * 9 7 5 12 12 H 1.48508 * 109.47209 * 239.99900 * 9 7 5 13 13 N 1.46503 * 109.47107 * 295.00227 * 3 2 1 14 14 C 1.34778 * 119.99914 * 85.00535 * 13 3 2 15 15 O 1.21287 * 119.99740 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99987 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47441 * 179.97438 * 16 14 13 18 18 N 1.46493 * 109.47251 * 180.02562 * 17 16 14 19 19 C 1.34778 * 119.99797 * 180.02562 * 18 17 16 20 20 O 1.21695 * 120.00180 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99801 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98702 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 1.09010 * 109.46940 * 300.00003 * 1 2 3 27 27 H 1.08994 * 109.47142 * 59.99251 * 1 2 3 28 28 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46650 * 240.00613 * 2 1 3 30 30 H 1.08996 * 109.46875 * 120.00024 * 2 1 3 31 31 H 0.97000 * 120.00109 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99579 * 264.99662 * 13 3 2 33 33 H 1.09007 * 109.47452 * 59.99486 * 16 14 13 34 34 H 1.09000 * 109.46924 * 299.99574 * 16 14 13 35 35 H 1.09007 * 109.46939 * 59.99513 * 17 16 14 36 36 H 1.09000 * 109.46993 * 299.99873 * 17 16 14 37 37 H 0.96998 * 120.00272 * 359.97438 * 18 17 16 38 38 H 1.08005 * 126.64485 * 359.97438 * 22 21 19 39 39 H 1.08003 * 126.44277 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8799 1.3810 10 1 6.5989 1.5441 0.1929 11 1 6.4001 1.6155 2.6090 12 1 6.4962 -0.5192 1.4624 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3668 15 8 -0.3395 2.6320 -0.4342 16 6 0.0366 3.3388 -2.6543 17 6 -1.3827 3.8945 -2.5209 18 7 -1.7702 4.5494 -3.7727 19 6 -2.9876 5.1163 -3.8878 20 8 -3.7649 5.0837 -2.9520 21 6 -3.3754 5.7724 -5.1408 22 6 -4.5714 6.3822 -5.3904 23 6 -4.5093 6.8693 -6.7053 24 6 -3.2934 6.5401 -7.1944 25 8 -2.6132 5.8791 -6.2487 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8294 -0.0614 2.9497 32 1 2.2719 2.1232 -1.9977 33 1 0.0679 2.6147 -3.4685 34 1 0.7280 4.1543 -2.8664 35 1 -1.4144 4.6184 -1.7066 36 1 -2.0738 3.0787 -2.3090 37 1 -1.1506 4.5757 -4.5184 38 1 -5.4041 6.4716 -4.7085 39 1 -5.2869 7.4068 -7.2277 40 1 -2.9286 6.7751 -8.1833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183826487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:19 Heat of formation + Delta-G solvation = -68.351559 kcal Electronic energy + Delta-G solvation = -22747.166528 eV Core-core repulsion = 19142.476138 eV Total energy + Delta-G solvation = -3604.690391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.99609 -39.71797 -38.97757 -35.61784 -34.87140 -33.40649 -32.43371 -31.56097 -30.74600 -29.64866 -27.03349 -24.74966 -23.11092 -22.45299 -22.00982 -20.72303 -20.17806 -19.35614 -18.77273 -17.17654 -16.69362 -16.53522 -16.22455 -15.78125 -15.32280 -15.14726 -14.64038 -14.29003 -14.18947 -13.52712 -13.38817 -13.34081 -13.05805 -12.89033 -12.68760 -12.09288 -11.82328 -11.59884 -11.27227 -11.22829 -10.97506 -10.85023 -10.52905 -10.41569 -10.32518 -10.18448 -9.64115 -9.35377 -9.08226 -9.02160 -8.97369 -8.51925 -7.84885 -6.14051 -4.23641 0.76292 2.01874 2.35272 2.95616 2.97346 3.22032 3.30022 3.32079 3.35064 4.10743 4.33981 4.40628 4.55293 4.66414 4.86389 5.13878 5.17706 5.28542 5.35788 5.41955 5.54299 5.66530 5.92461 5.95668 5.99239 6.19462 6.39113 6.45248 6.48131 6.65667 7.02794 7.18993 7.24684 7.35661 7.43339 7.60368 7.71272 7.88104 7.88806 8.16906 8.63390 8.75630 9.10183 9.43846 10.91265 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002519 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.528342 B =11113.383611 C =11608.201737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.504 3.496 15 O -0.545 6.545 16 C -0.157 4.157 17 C 0.135 3.865 18 N -0.719 5.719 19 C 0.600 3.400 20 O -0.515 6.515 21 C -0.076 4.076 22 C -0.122 4.122 23 C -0.225 4.225 24 C -0.009 4.009 25 O -0.165 6.165 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.404 0.596 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 10.054 -19.561 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.197 4.197 17 C 0.012 3.988 18 N -0.370 5.370 19 C 0.385 3.615 20 O -0.392 6.392 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.244 4.244 24 C -0.079 4.079 25 O -0.060 6.060 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.239 0.761 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.511 9.745 -17.977 22.992 hybrid contribution 1.472 0.094 -0.824 1.690 sum -9.039 9.839 -18.802 23.065 Atomic orbital electron populations 1.21840 0.98297 0.98063 1.01250 1.21936 0.92637 0.99800 1.02266 1.18804 0.94216 0.89212 0.81026 0.93250 1.21262 0.90715 1.38983 1.06281 0.92067 1.24895 0.98611 0.94827 0.95417 1.69903 1.35043 1.37588 1.09336 0.86407 0.84877 0.77767 0.78104 1.19779 1.20884 1.20887 1.46488 1.14526 1.55891 1.18604 1.20010 0.83007 0.79604 0.88596 1.90716 1.51317 1.59846 1.40537 1.21850 0.97235 1.01867 0.98779 1.21164 0.94826 0.98032 0.84825 1.45942 1.16022 1.57259 1.17765 1.16521 0.82253 0.78335 0.84356 1.90926 1.51530 1.59190 1.37560 1.22176 0.93059 1.09354 0.88208 1.22013 0.97481 0.97923 0.96893 1.21882 0.99222 1.07327 0.96006 1.24422 0.92289 0.97037 0.94134 1.84061 1.41879 1.59486 1.20558 0.93095 0.94329 0.95859 0.95079 0.88294 0.92593 0.77949 0.88833 0.88739 0.89985 0.90032 0.76149 0.82157 0.82577 0.77316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.71 -13.79 5.02 -54.93 -0.28 -14.07 16 14 C 0.50 9.21 6.40 -10.99 -0.07 9.14 16 15 O -0.55 -12.16 13.12 5.55 0.07 -12.09 16 16 C -0.16 -1.93 5.81 -27.89 -0.16 -2.09 16 17 C 0.13 1.81 4.96 -4.05 -0.02 1.79 16 18 N -0.72 -8.04 5.55 -61.63 -0.34 -8.38 16 19 C 0.60 7.89 7.79 -12.86 -0.10 7.79 16 20 O -0.51 -8.66 16.86 5.19 0.09 -8.57 16 21 C -0.08 -0.83 7.13 -36.79 -0.26 -1.09 16 22 C -0.12 -1.19 10.62 -39.39 -0.42 -1.61 16 23 C -0.23 -1.57 10.87 -39.89 -0.43 -2.01 16 24 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 25 O -0.16 -1.46 10.40 5.00 0.05 -1.40 16 26 H 0.05 1.21 7.85 -51.92 -0.41 0.80 16 27 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.39 6.44 8.54 -40.82 -0.35 6.09 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.40 3.36 8.23 -40.82 -0.34 3.02 16 38 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.21 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -32.79 341.77 -6.57 -39.36 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.43 Total: 8.22 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.49 Total: 0.31 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.01 Total: -46.30 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.21 Total: -22.06 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.79 -6.57 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.993 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds