Wall clock time and date at job start Tue Mar 31 2020 06:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 H 1.08997 * 109.47011 * 55.00289 * 3 2 1 5 5 C 1.50696 * 109.46962 * 175.00053 * 3 2 1 6 6 H 1.08008 * 119.99909 * 120.00007 * 5 3 2 7 7 C 1.37877 * 120.00177 * 300.00323 * 5 3 2 8 8 N 1.31512 * 119.99996 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99952 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47483 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47348 * 120.00019 * 9 7 5 12 12 H 1.48508 * 109.47209 * 239.99900 * 9 7 5 13 13 N 1.46503 * 109.47107 * 295.00227 * 3 2 1 14 14 C 1.34778 * 119.99914 * 85.00535 * 13 3 2 15 15 O 1.21287 * 119.99740 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99987 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47441 * 179.97438 * 16 14 13 18 18 N 1.46493 * 109.47251 * 180.02562 * 17 16 14 19 19 C 1.34778 * 119.99797 * 180.02562 * 18 17 16 20 20 O 1.21695 * 120.00180 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99801 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98702 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 1.09010 * 109.46940 * 300.00003 * 1 2 3 27 27 H 1.08994 * 109.47142 * 59.99251 * 1 2 3 28 28 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46650 * 240.00613 * 2 1 3 30 30 H 1.08996 * 109.46875 * 120.00024 * 2 1 3 31 31 H 0.97000 * 120.00109 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99579 * 264.99662 * 13 3 2 33 33 H 1.09007 * 109.47452 * 59.99486 * 16 14 13 34 34 H 1.09000 * 109.46924 * 299.99574 * 16 14 13 35 35 H 1.09007 * 109.46939 * 59.99513 * 17 16 14 36 36 H 1.09000 * 109.46993 * 299.99873 * 17 16 14 37 37 H 0.96998 * 120.00272 * 359.97438 * 18 17 16 38 38 H 1.08005 * 126.64485 * 359.97438 * 22 21 19 39 39 H 1.08003 * 126.44277 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8799 1.3810 10 1 6.5989 1.5441 0.1929 11 1 6.4001 1.6155 2.6090 12 1 6.4962 -0.5192 1.4624 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3668 15 8 -0.3395 2.6320 -0.4342 16 6 0.0366 3.3388 -2.6543 17 6 -1.3827 3.8945 -2.5209 18 7 -1.7702 4.5494 -3.7727 19 6 -2.9876 5.1163 -3.8878 20 8 -3.7649 5.0837 -2.9520 21 6 -3.3754 5.7724 -5.1408 22 6 -4.5714 6.3822 -5.3904 23 6 -4.5093 6.8693 -6.7053 24 6 -3.2934 6.5401 -7.1944 25 8 -2.6132 5.8791 -6.2487 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8294 -0.0614 2.9497 32 1 2.2719 2.1232 -1.9977 33 1 0.0679 2.6147 -3.4685 34 1 0.7280 4.1543 -2.8664 35 1 -1.4144 4.6184 -1.7066 36 1 -2.0738 3.0787 -2.3090 37 1 -1.1506 4.5757 -4.5184 38 1 -5.4041 6.4716 -4.7085 39 1 -5.2869 7.4068 -7.2277 40 1 -2.9286 6.7751 -8.1833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183826487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:19 Heat of formation + Delta-G solvation = -93.130042 kcal Electronic energy + Delta-G solvation = -22748.241004 eV Core-core repulsion = 19142.476138 eV Total energy + Delta-G solvation = -3605.764866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.62894 -40.93767 -40.36094 -37.13785 -36.27694 -34.28664 -34.04516 -33.07581 -32.07387 -30.53115 -28.89631 -25.94219 -24.79350 -23.51274 -22.66501 -21.98922 -21.45496 -21.00431 -19.65964 -18.76694 -17.71410 -17.46381 -17.30878 -17.05815 -16.86535 -16.52495 -16.00327 -15.86217 -15.20200 -14.92391 -14.61761 -14.51147 -14.09099 -13.93254 -13.71083 -13.54359 -13.44431 -13.16422 -12.99413 -12.78886 -12.70333 -12.43386 -12.13242 -12.02702 -11.60582 -11.57098 -11.04561 -11.02096 -10.66999 -10.49697 -10.38170 -9.64610 -9.59000 -8.14819 -6.31970 0.01627 1.43775 1.44686 1.46063 1.57241 1.59410 1.88996 2.06406 2.07650 2.39985 2.81821 3.15010 3.62501 3.80360 3.96340 4.08486 4.13741 4.14938 4.50645 4.54900 4.58784 4.62268 4.78704 4.84826 4.86995 4.93698 4.97243 5.08255 5.18881 5.28384 5.40542 5.45617 5.58457 5.65872 5.81924 5.82956 5.95465 6.19408 6.38581 6.77548 6.95988 7.02783 7.35891 7.64285 8.90666 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002519 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.528342 B =11113.383611 C =11608.201737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.004 1.004 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.703 5.703 14 C 0.498 3.502 15 O -0.591 6.591 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.702 5.702 19 C 0.597 3.403 20 O -0.566 6.566 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.236 4.236 24 C 0.015 3.985 25 O -0.167 6.167 26 H 0.022 0.978 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.421 0.579 38 H 0.155 0.845 39 H 0.183 0.817 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 10.955 -23.533 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.014 0.986 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.213 1.213 12 H -0.206 1.206 13 N -0.353 5.353 14 C 0.285 3.715 15 O -0.473 6.473 16 C -0.175 4.175 17 C 0.018 3.982 18 N -0.353 5.353 19 C 0.385 3.615 20 O -0.447 6.447 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.255 4.255 24 C -0.054 4.054 25 O -0.063 6.063 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.259 0.741 38 H 0.172 0.828 39 H 0.200 0.800 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.234 10.660 -22.027 26.155 hybrid contribution 1.006 -0.109 0.323 1.062 sum -8.228 10.550 -21.704 25.497 Atomic orbital electron populations 1.21683 0.97078 0.99040 1.00286 1.21783 0.93618 0.99293 1.01299 1.18354 0.93609 0.89151 0.81659 0.98615 1.21626 0.91455 1.38577 1.06582 0.90775 1.25793 1.03266 0.94531 0.95157 1.70064 1.36982 1.38536 1.09923 0.85329 0.79247 0.77728 0.78197 1.18208 1.21275 1.20621 1.46216 1.15602 1.55927 1.17528 1.20982 0.81810 0.78659 0.90078 1.90711 1.52484 1.61249 1.42834 1.21725 0.96597 1.03176 0.95972 1.20867 0.95276 0.96783 0.85240 1.45686 1.15907 1.56356 1.17397 1.16845 0.82043 0.77870 0.84762 1.90890 1.52966 1.61253 1.39582 1.21666 0.94067 1.11767 0.88484 1.22276 0.96954 0.97334 0.98300 1.22224 1.00616 1.07810 0.94811 1.25430 0.91495 0.93851 0.94661 1.84051 1.41905 1.59976 1.20327 0.95854 0.93461 0.93772 0.93819 0.91270 0.92717 0.75826 0.85070 0.85307 0.92550 0.92331 0.74074 0.82755 0.79962 0.72613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 3 C 0.28 13.82 2.24 44.24 0.10 13.92 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.26 16 5 C -0.54 -28.08 8.73 25.60 0.22 -27.85 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.66 5.29 84.65 0.45 1.11 16 8 N -0.92 -52.38 11.29 21.45 0.24 -52.14 16 9 Si 0.97 41.57 29.54 68.60 2.03 43.59 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.70 -26.88 5.02 -446.10 -2.24 -29.12 16 14 C 0.50 17.99 6.40 87.65 0.56 18.55 16 15 O -0.59 -27.33 13.12 -3.05 -0.04 -27.37 16 16 C -0.13 -3.00 5.81 29.85 0.17 -2.82 16 17 C 0.14 3.82 4.96 86.38 0.43 4.25 16 18 N -0.70 -15.03 5.55 -467.10 -2.59 -17.63 16 19 C 0.60 15.93 7.79 86.44 0.67 16.60 16 20 O -0.57 -20.13 16.86 -4.33 -0.07 -20.20 16 21 C -0.11 -2.27 7.13 24.08 0.17 -2.10 16 22 C -0.13 -2.38 10.62 22.39 0.24 -2.14 16 23 C -0.24 -2.61 10.87 22.07 0.24 -2.37 16 24 C 0.01 0.12 12.08 67.10 0.81 0.93 16 25 O -0.17 -2.50 10.40 -5.01 -0.05 -2.55 16 26 H 0.02 1.14 7.85 -2.38 -0.02 1.12 16 27 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.41 12.53 8.54 -92.71 -0.79 11.74 16 33 H 0.13 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.81 8.10 -2.38 -0.02 1.79 16 36 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.42 5.93 8.23 -92.71 -0.76 5.17 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.26 -0.57 8.06 -2.91 -0.02 -0.60 16 Total: -1.00 -76.84 341.77 1.64 -75.20 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.48 Total: 22.83 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.85 Total: 7.40 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -4.59 Total: -98.89 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.17 Total: -50.13 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -76.84 1.64 -75.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.930 kcal (2) G-P(sol) polarization free energy of solvation -76.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds