Wall clock time and date at job start Tue Mar 31 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.46893 * 180.02562 * 17 16 14 19 19 C 1.34783 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21695 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.46655 * 120.00062 * 180.02562 * 19 18 17 22 22 C 1.36543 * 125.99010 * 179.71576 * 21 19 18 23 23 C 1.40360 * 106.70637 * 179.90582 * 22 21 19 24 24 C 1.35126 * 107.12137 * 0.35479 * 23 22 21 25 25 O 1.33931 * 108.76414 * 359.77767 * 24 23 22 26 26 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 31 31 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 32 32 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 33 33 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 34 34 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 35 35 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 36 36 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 37 37 H 0.96993 * 120.00589 * 0.02562 * 18 17 16 38 38 H 1.08001 * 126.64170 * 0.03431 * 22 21 19 39 39 H 1.08008 * 126.44050 * 180.14977 * 23 22 21 40 40 H 1.07992 * 125.62316 * 179.77845 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 7 -1.7353 4.5373 3.8176 19 6 -2.9515 5.1039 3.9457 20 8 -3.7374 5.0744 3.0170 21 6 -3.3278 5.7561 5.2042 22 6 -4.5192 6.3703 5.4647 23 6 -4.4464 6.8495 6.7820 24 6 -3.2264 6.5181 7.2591 25 8 -2.5553 5.8593 6.3055 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5318 32 1 2.2902 2.1166 1.9978 33 1 0.0991 2.6017 3.4901 34 1 0.7539 4.1436 2.8885 35 1 -1.3974 4.6138 1.7493 36 1 -2.0528 3.0720 2.3506 37 1 -1.1091 4.5605 4.5579 38 1 -5.3561 6.4666 4.7889 39 1 -5.2191 7.3856 7.3132 40 1 -2.8538 6.7467 8.2466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183826503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:22 Heat of formation + Delta-G solvation = -67.964223 kcal Electronic energy + Delta-G solvation = -22829.575850 eV Core-core repulsion = 19224.902255 eV Total energy + Delta-G solvation = -3604.673595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.03296 -39.81036 -39.14996 -35.76695 -35.02409 -33.44560 -32.50554 -31.84919 -31.03268 -29.74440 -27.27206 -24.78930 -22.79636 -22.27823 -22.05331 -20.82531 -20.37964 -19.56659 -18.85206 -17.77454 -16.73674 -16.73379 -16.54764 -15.91690 -15.49075 -15.32750 -14.75334 -14.35043 -13.95817 -13.49133 -13.41690 -13.37806 -13.22215 -13.03089 -12.55251 -12.48406 -12.30393 -11.89592 -11.80075 -11.37149 -10.91398 -10.71171 -10.57817 -10.45147 -10.44867 -9.90792 -9.61122 -9.41641 -9.25556 -9.05336 -9.01723 -8.36553 -8.12762 -6.60397 -4.24829 0.72109 1.98282 2.30999 2.89134 2.92277 3.16683 3.37790 3.44100 3.58538 3.99369 4.32508 4.40120 4.51754 4.60988 4.77570 5.04034 5.14453 5.23259 5.24903 5.38487 5.50349 5.52693 5.82942 5.89884 5.93129 6.05927 6.08737 6.11918 6.26438 6.43919 6.67126 6.78328 6.93657 7.02906 7.18388 7.33467 7.37471 7.62295 7.82483 8.20305 8.42000 8.67106 8.92966 9.44418 10.80245 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.002620 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.192996 B =10684.246252 C =11027.998616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.042 0.958 5 C -0.617 4.617 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.700 5.700 14 C 0.505 3.495 15 O -0.547 6.547 16 C -0.156 4.156 17 C 0.135 3.865 18 N -0.719 5.719 19 C 0.601 3.399 20 O -0.515 6.515 21 C -0.077 4.077 22 C -0.122 4.122 23 C -0.225 4.225 24 C -0.008 4.008 25 O -0.165 6.165 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.404 0.596 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 9.704 18.382 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.060 0.940 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.531 5.531 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.348 5.348 14 C 0.289 3.711 15 O -0.426 6.426 16 C -0.197 4.197 17 C 0.012 3.988 18 N -0.370 5.370 19 C 0.386 3.614 20 O -0.392 6.392 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.245 4.245 24 C -0.078 4.078 25 O -0.060 6.060 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.226 0.774 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.239 0.761 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.459 8.975 15.422 23.609 hybrid contribution 0.528 0.719 2.651 2.797 sum -14.931 9.694 18.073 25.369 Atomic orbital electron populations 1.21884 0.97327 0.98899 1.01967 1.22363 0.93825 0.99773 1.01851 1.19062 0.95790 0.88583 0.82271 0.94017 1.22088 0.89711 1.49584 1.04124 0.92098 1.25687 0.97539 0.92334 1.01227 1.70878 1.07077 1.40876 1.34290 0.84112 0.75485 0.77772 0.75845 1.20941 1.19469 1.20577 1.46242 1.14488 1.55885 1.18164 1.20085 0.82853 0.79419 0.88740 1.90705 1.50782 1.59851 1.41247 1.21838 0.97428 1.01977 0.98451 1.21154 0.94776 0.98115 0.84786 1.45930 1.15974 1.57436 1.17706 1.16517 0.82254 0.78285 0.84326 1.90924 1.50941 1.59135 1.38222 1.22154 0.92952 1.09431 0.88359 1.22014 0.97583 0.97836 0.96794 1.21887 0.99126 1.07390 0.96047 1.24428 0.92397 0.97021 0.93942 1.84063 1.41759 1.59578 1.20600 0.92959 0.95082 0.93345 0.91283 0.93124 0.92134 0.77429 0.88672 0.88576 0.89970 0.90011 0.76106 0.82147 0.82548 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.15 0.32 -2.55 16 2 C -0.14 -3.06 5.28 -26.73 -0.14 -3.20 16 3 C 0.25 5.72 1.82 -69.08 -0.13 5.60 16 4 H 0.04 1.07 6.26 -51.93 -0.32 0.74 16 5 C -0.62 -16.33 9.01 -34.44 -0.31 -16.64 16 6 H 0.06 1.68 7.96 -52.48 -0.42 1.26 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.48 13.69 55.43 0.76 -25.73 16 9 Si 1.04 24.94 26.27 -169.99 -4.47 20.47 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.02 5.67 56.52 0.32 -5.70 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.70 -13.23 5.03 -54.94 -0.28 -13.51 16 14 C 0.50 8.78 6.42 -10.99 -0.07 8.71 16 15 O -0.55 -11.45 13.12 5.56 0.07 -11.38 16 16 C -0.16 -1.83 5.81 -27.88 -0.16 -1.99 16 17 C 0.13 1.73 4.96 -4.04 -0.02 1.71 16 18 N -0.72 -7.72 5.55 -61.63 -0.34 -8.07 16 19 C 0.60 7.66 7.79 -12.86 -0.10 7.56 16 20 O -0.52 -8.43 16.86 5.19 0.09 -8.34 16 21 C -0.08 -0.81 7.13 -36.80 -0.26 -1.08 16 22 C -0.12 -1.15 10.62 -39.40 -0.42 -1.57 16 23 C -0.23 -1.53 10.87 -39.89 -0.43 -1.96 16 24 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 25 O -0.16 -1.42 10.40 4.98 0.05 -1.37 16 26 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.94 5.63 -51.92 -0.29 0.65 16 29 H 0.07 1.59 4.74 -51.92 -0.25 1.35 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 32 H 0.39 6.51 8.53 -40.82 -0.35 6.16 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.40 3.21 8.23 -40.82 -0.34 2.88 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.21 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -33.67 337.33 -5.90 -39.57 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.41 Total: 7.39 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.46 Total: -4.13 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.14 Total: -47.30 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.21 Total: -21.09 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.47 Total: 20.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.67 -5.90 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.391 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds