Wall clock time and date at job start Tue Mar 31 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.46893 * 180.02562 * 17 16 14 19 19 C 1.34783 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21695 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.46655 * 120.00062 * 180.02562 * 19 18 17 22 22 C 1.36543 * 125.99010 * 179.71576 * 21 19 18 23 23 C 1.40360 * 106.70637 * 179.90582 * 22 21 19 24 24 C 1.35126 * 107.12137 * 0.35479 * 23 22 21 25 25 O 1.33931 * 108.76414 * 359.77767 * 24 23 22 26 26 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 31 31 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 32 32 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 33 33 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 34 34 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 35 35 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 36 36 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 37 37 H 0.96993 * 120.00589 * 0.02562 * 18 17 16 38 38 H 1.08001 * 126.64170 * 0.03431 * 22 21 19 39 39 H 1.08008 * 126.44050 * 180.14977 * 23 22 21 40 40 H 1.07992 * 125.62316 * 179.77845 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 7 -1.7353 4.5373 3.8176 19 6 -2.9515 5.1039 3.9457 20 8 -3.7374 5.0744 3.0170 21 6 -3.3278 5.7561 5.2042 22 6 -4.5192 6.3703 5.4647 23 6 -4.4464 6.8495 6.7820 24 6 -3.2264 6.5181 7.2591 25 8 -2.5553 5.8593 6.3055 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5318 32 1 2.2902 2.1166 1.9978 33 1 0.0991 2.6017 3.4901 34 1 0.7539 4.1436 2.8885 35 1 -1.3974 4.6138 1.7493 36 1 -2.0528 3.0720 2.3506 37 1 -1.1091 4.5605 4.5579 38 1 -5.3561 6.4666 4.7889 39 1 -5.2191 7.3856 7.3132 40 1 -2.8538 6.7467 8.2466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183826503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:22 Heat of formation + Delta-G solvation = -94.217776 kcal Electronic energy + Delta-G solvation = -22830.714289 eV Core-core repulsion = 19224.902255 eV Total energy + Delta-G solvation = -3605.812034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.64300 -41.01840 -40.41861 -37.27036 -36.31288 -34.45924 -34.06356 -33.37853 -32.16375 -30.56244 -29.07786 -25.85781 -24.26121 -23.56261 -22.68593 -22.12132 -21.48716 -21.13493 -19.90647 -19.44003 -18.02718 -17.49662 -17.34335 -17.11934 -16.80949 -16.62272 -15.98987 -15.57087 -15.24764 -14.96039 -14.80192 -14.47880 -14.30575 -14.09274 -13.95145 -13.84732 -13.56148 -13.53355 -12.94248 -12.70943 -12.51311 -12.44246 -12.26934 -11.78790 -11.62133 -11.39268 -11.10212 -11.05939 -10.72054 -10.47815 -10.39828 -9.78083 -9.65606 -8.78596 -6.43637 0.00139 1.42316 1.45220 1.49820 1.57256 1.68643 1.79249 2.04942 2.04990 2.40842 2.67487 3.01528 3.58701 3.78065 3.94999 4.04271 4.05451 4.12691 4.33334 4.41795 4.47877 4.59298 4.61208 4.81174 4.84643 4.87853 4.92093 4.95868 5.11713 5.16760 5.23583 5.31474 5.39097 5.56059 5.68714 5.70236 5.81411 6.02199 6.36278 6.54515 6.87739 6.93774 7.29670 7.48582 8.60899 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.002620 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.192996 B =10684.246252 C =11027.998616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.020 0.980 5 C -0.610 4.610 6 H 0.043 0.957 7 C -0.006 4.006 8 N -0.930 5.930 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.245 1.245 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.502 3.498 15 O -0.584 6.584 16 C -0.137 4.137 17 C 0.143 3.857 18 N -0.703 5.703 19 C 0.598 3.402 20 O -0.565 6.565 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.236 4.236 24 C 0.014 3.986 25 O -0.168 6.168 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.258 0.742 32 H 0.406 0.594 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.421 0.579 38 H 0.156 0.844 39 H 0.183 0.817 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.784 10.273 21.208 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.038 0.962 5 C -0.648 4.648 6 H 0.061 0.939 7 C -0.206 4.206 8 N -0.565 5.565 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.170 1.170 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.177 4.177 17 C 0.018 3.982 18 N -0.355 5.355 19 C 0.386 3.614 20 O -0.445 6.445 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.255 4.255 24 C -0.055 4.055 25 O -0.063 6.063 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.241 0.759 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.200 0.800 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -16.461 9.551 18.318 26.415 hybrid contribution 0.823 0.649 1.939 2.204 sum -15.638 10.200 20.257 27.549 Atomic orbital electron populations 1.21768 0.95601 1.00270 1.01444 1.22250 0.95254 0.98441 1.01533 1.18731 0.93364 0.89691 0.83742 0.96228 1.22294 0.91567 1.47830 1.03122 0.93922 1.26742 0.97705 0.92268 1.03934 1.70975 1.08057 1.43411 1.34064 0.83735 0.75168 0.78551 0.73306 1.20997 1.16957 1.20157 1.46058 1.15646 1.56203 1.17134 1.20938 0.81575 0.78427 0.90184 1.90697 1.51668 1.60958 1.43167 1.21729 0.96838 1.03184 0.95921 1.20884 0.95162 0.96988 0.85119 1.45700 1.15834 1.56547 1.17415 1.16819 0.82068 0.77841 0.84699 1.90888 1.52346 1.61166 1.40150 1.21689 0.93948 1.11777 0.88638 1.22278 0.97091 0.97264 0.98174 1.22227 1.00469 1.07858 0.94908 1.25419 0.91676 0.93944 0.94457 1.84054 1.41794 1.60066 1.20431 0.94405 0.92692 0.92990 0.92563 0.92483 0.93224 0.75947 0.85115 0.85611 0.92345 0.91947 0.74153 0.82669 0.79967 0.72693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.53 71.98 0.61 -4.50 16 2 C -0.14 -5.80 5.28 30.59 0.16 -5.63 16 3 C 0.25 11.46 1.82 44.24 0.08 11.54 16 4 H 0.02 1.01 6.26 -2.39 -0.01 0.99 16 5 C -0.61 -32.43 9.01 25.60 0.23 -32.20 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 7 C -0.01 -0.32 5.32 84.66 0.45 0.13 16 8 N -0.93 -55.76 13.69 21.45 0.29 -55.47 16 9 Si 1.07 50.39 26.27 68.60 1.80 52.19 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.24 -10.54 5.67 99.48 0.56 -9.98 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.70 -25.55 5.03 -446.11 -2.24 -27.79 16 14 C 0.50 16.73 6.42 87.66 0.56 17.29 16 15 O -0.58 -24.27 13.12 -3.03 -0.04 -24.31 16 16 C -0.14 -2.84 5.81 29.85 0.17 -2.66 16 17 C 0.14 3.55 4.96 86.38 0.43 3.98 16 18 N -0.70 -14.26 5.55 -467.10 -2.59 -16.85 16 19 C 0.60 15.28 7.79 86.44 0.67 15.95 16 20 O -0.56 -19.26 16.86 -4.33 -0.07 -19.33 16 21 C -0.11 -2.21 7.13 24.07 0.17 -2.04 16 22 C -0.13 -2.29 10.62 22.39 0.24 -2.05 16 23 C -0.24 -2.51 10.87 22.07 0.24 -2.27 16 24 C 0.01 0.12 12.08 67.10 0.81 0.93 16 25 O -0.17 -2.45 10.40 -5.11 -0.05 -2.50 16 26 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.93 5.63 -2.38 -0.01 1.92 16 29 H 0.06 2.53 4.74 -2.38 -0.01 2.51 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.26 15.46 8.73 -92.71 -0.81 14.65 16 32 H 0.41 12.66 8.53 -92.71 -0.79 11.87 16 33 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 36 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.42 5.62 8.23 -92.71 -0.76 4.86 16 38 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.26 -0.60 8.06 -2.91 -0.02 -0.62 16 Total: -1.00 -76.33 337.33 1.28 -75.06 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.65 Total: 20.55 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 4.83 Total: -1.54 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -4.54 Total: -100.11 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.17 Total: -46.14 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.80 Total: 52.19 kcal Total: -76.33 1.28 -75.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.161 kcal (2) G-P(sol) polarization free energy of solvation -76.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds