Wall clock time and date at job start Tue Mar 31 2020 06:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 18 18 C 1.52996 * 109.47443 * 299.99838 * 16 14 13 19 19 N 1.46506 * 109.47414 * 179.97438 * 16 14 13 20 20 C 1.34776 * 120.00154 * 205.00293 * 19 16 14 21 21 O 1.21697 * 120.00020 * 359.97438 * 20 19 16 22 22 C 1.46657 * 119.99851 * 180.02562 * 20 19 16 23 23 C 1.36542 * 125.98725 * 179.71855 * 22 20 19 24 24 C 1.40364 * 106.70673 * 179.84674 * 23 22 20 25 25 C 1.35128 * 107.11611 * 0.40807 * 24 23 22 26 26 O 1.33934 * 108.76828 * 359.74324 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.08997 * 109.47582 * 179.97438 * 18 16 14 35 35 H 1.09000 * 109.47546 * 300.00390 * 18 16 14 36 36 H 1.09006 * 109.46974 * 59.99951 * 18 16 14 37 37 H 0.97002 * 119.99323 * 24.99847 * 19 16 14 38 38 H 1.08002 * 126.64285 * 359.95143 * 23 22 20 39 39 H 1.08004 * 126.43800 * 180.15345 * 24 23 22 40 40 H 1.07995 * 125.61867 * 179.71358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.0679 2.6147 -3.4685 18 6 1.0070 4.4834 -2.9522 19 7 -1.3224 3.8708 -2.5267 20 6 -2.0801 4.0550 -3.6260 21 8 -1.6351 3.7798 -4.7248 22 6 -3.4403 4.5881 -3.4982 23 6 -4.3080 4.8273 -4.5250 24 6 -5.4863 5.3276 -3.9492 25 6 -5.2854 5.3799 -2.6140 26 8 -4.0514 4.9334 -2.3461 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 0.7191 4.9709 -3.8836 35 1 0.9758 5.2075 -2.1380 36 1 2.0180 4.0872 -3.0473 37 1 -1.6770 4.0904 -1.6509 38 1 -4.1240 4.6618 -5.5763 39 1 -6.3833 5.6201 -4.4750 40 1 -6.0016 5.7253 -1.8832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183920552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:25 Heat of formation + Delta-G solvation = -64.312066 kcal Electronic energy + Delta-G solvation = -23597.475603 eV Core-core repulsion = 19992.960378 eV Total energy + Delta-G solvation = -3604.515225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.86338 -40.04643 -38.76750 -35.53047 -34.65970 -33.28134 -32.60674 -31.54537 -30.58511 -29.38854 -27.00922 -24.82774 -23.40538 -22.58611 -21.94151 -20.49574 -20.18143 -19.43644 -18.90605 -17.22589 -16.58697 -16.48351 -16.12769 -15.50158 -15.27675 -14.87814 -14.54443 -14.34604 -13.82569 -13.48175 -13.33180 -13.20296 -12.89493 -12.71722 -12.62584 -12.29615 -11.98717 -11.53668 -11.42777 -11.28199 -11.03225 -10.85091 -10.42989 -10.36462 -10.28943 -10.21867 -9.67462 -9.41994 -9.11506 -9.03165 -8.84618 -8.53906 -7.92547 -6.16027 -4.25828 0.88532 2.13453 2.48843 3.02761 3.07096 3.22619 3.24009 3.29200 3.30508 3.99514 4.33266 4.49193 4.66982 4.80100 5.14015 5.15831 5.18182 5.32341 5.40345 5.52896 5.64236 5.69043 5.83579 6.07967 6.18166 6.27014 6.35652 6.41463 6.61358 6.62185 6.99846 7.13869 7.29254 7.35369 7.43272 7.56535 7.66606 7.84210 7.98940 8.13159 8.55306 8.70523 8.99067 9.41287 10.89218 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.003213 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.551217 B = 8712.403160 C = 9108.263881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.499 3.501 15 O -0.545 6.545 16 C 0.120 3.880 17 H 0.111 0.889 18 C -0.158 4.158 19 N -0.695 5.695 20 C 0.604 3.396 21 O -0.526 6.526 22 C -0.073 4.073 23 C -0.123 4.123 24 C -0.228 4.228 25 C -0.006 4.006 26 O -0.160 6.160 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.391 0.609 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.415 0.585 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 8.999 -10.289 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.347 5.347 14 C 0.282 3.718 15 O -0.424 6.424 16 C 0.011 3.989 17 H 0.129 0.871 18 C -0.216 4.216 19 N -0.347 5.347 20 C 0.390 3.610 21 O -0.404 6.404 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.247 4.247 25 C -0.076 4.076 26 O -0.055 6.055 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.223 0.777 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.253 0.747 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.930 8.614 -9.866 18.405 hybrid contribution 0.856 0.087 0.044 0.862 sum -12.074 8.701 -9.822 17.832 Atomic orbital electron populations 1.21838 0.98360 0.98136 1.01117 1.21948 0.92584 0.99774 1.02424 1.18829 0.94300 0.89184 0.80711 0.93176 1.21180 0.90589 1.39282 1.06381 0.92045 1.24879 0.98644 0.94734 0.95360 1.69881 1.35273 1.37439 1.09316 0.86506 0.84779 0.78331 0.77482 1.20175 1.21138 1.20128 1.46455 1.14116 1.55304 1.18788 1.20201 0.83338 0.79705 0.88525 1.90676 1.51334 1.60206 1.40161 1.20950 0.82265 0.97330 0.98312 0.87079 1.22109 0.98867 0.97987 1.02645 1.45665 1.14533 1.64338 1.10199 1.16508 0.81818 0.77937 0.84699 1.90872 1.71583 1.52066 1.25892 1.22078 0.95778 1.10424 0.84271 1.21967 0.92357 0.99772 1.00299 1.21858 1.00533 1.08104 0.94198 1.24443 0.85041 1.00420 0.97735 1.84120 1.25447 1.62641 1.33277 0.93137 0.95788 0.94428 0.88190 0.94925 0.92461 0.77658 0.91302 0.91674 0.90435 0.74688 0.82210 0.82615 0.77343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.57 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.70 -13.66 4.91 -54.93 -0.27 -13.93 16 14 C 0.50 9.27 5.79 -10.99 -0.06 9.21 16 15 O -0.54 -11.77 12.98 5.56 0.07 -11.69 16 16 C 0.12 1.79 2.98 -69.08 -0.21 1.58 16 17 H 0.11 1.63 7.58 -51.93 -0.39 1.24 16 18 C -0.16 -2.01 9.38 37.16 0.35 -1.66 16 19 N -0.70 -10.18 4.95 -56.25 -0.28 -10.45 16 20 C 0.60 8.88 7.75 -12.86 -0.10 8.78 16 21 O -0.53 -8.76 16.53 5.19 0.09 -8.67 16 22 C -0.07 -0.94 7.13 -36.80 -0.26 -1.20 16 23 C -0.12 -1.35 10.62 -39.39 -0.42 -1.76 16 24 C -0.23 -1.91 10.87 -39.89 -0.43 -2.35 16 25 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 26 O -0.16 -1.86 10.40 4.98 0.05 -1.81 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 6.63 7.96 -40.82 -0.32 6.30 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.90 7.57 -51.93 -0.39 0.51 16 37 H 0.42 6.10 7.54 -40.82 -0.31 5.80 16 38 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -30.72 339.20 -6.10 -36.82 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.32 Total: 11.93 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.16 Total: 1.09 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.08 Total: -47.96 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.21 Total: -22.17 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.72 -6.10 -36.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183920552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.495 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds