Wall clock time and date at job start Tue Mar 31 2020 06:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 18 18 C 1.52996 * 109.47443 * 299.99838 * 16 14 13 19 19 N 1.46506 * 109.47414 * 179.97438 * 16 14 13 20 20 C 1.34776 * 120.00154 * 205.00293 * 19 16 14 21 21 O 1.21697 * 120.00020 * 359.97438 * 20 19 16 22 22 C 1.46657 * 119.99851 * 180.02562 * 20 19 16 23 23 C 1.36542 * 125.98725 * 179.71855 * 22 20 19 24 24 C 1.40364 * 106.70673 * 179.84674 * 23 22 20 25 25 C 1.35128 * 107.11611 * 0.40807 * 24 23 22 26 26 O 1.33934 * 108.76828 * 359.74324 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.08997 * 109.47582 * 179.97438 * 18 16 14 35 35 H 1.09000 * 109.47546 * 300.00390 * 18 16 14 36 36 H 1.09006 * 109.46974 * 59.99951 * 18 16 14 37 37 H 0.97002 * 119.99323 * 24.99847 * 19 16 14 38 38 H 1.08002 * 126.64285 * 359.95143 * 23 22 20 39 39 H 1.08004 * 126.43800 * 180.15345 * 24 23 22 40 40 H 1.07995 * 125.61867 * 179.71358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.0679 2.6147 -3.4685 18 6 1.0070 4.4834 -2.9522 19 7 -1.3224 3.8708 -2.5267 20 6 -2.0801 4.0550 -3.6260 21 8 -1.6351 3.7798 -4.7248 22 6 -3.4403 4.5881 -3.4982 23 6 -4.3080 4.8273 -4.5250 24 6 -5.4863 5.3276 -3.9492 25 6 -5.2854 5.3799 -2.6140 26 8 -4.0514 4.9334 -2.3461 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 0.7191 4.9709 -3.8836 35 1 0.9758 5.2075 -2.1380 36 1 2.0180 4.0872 -3.0473 37 1 -1.6770 4.0904 -1.6509 38 1 -4.1240 4.6618 -5.5763 39 1 -6.3833 5.6201 -4.4750 40 1 -6.0016 5.7253 -1.8832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183920552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:24 Heat of formation + Delta-G solvation = -86.023324 kcal Electronic energy + Delta-G solvation = -23598.417074 eV Core-core repulsion = 19992.960378 eV Total energy + Delta-G solvation = -3605.456696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.64988 -41.39150 -40.14966 -37.17555 -36.06656 -34.41183 -34.04676 -33.13848 -31.93643 -30.35862 -28.87805 -26.03400 -25.04341 -23.90133 -22.71316 -21.93479 -21.36773 -21.10173 -20.02344 -18.73958 -17.71367 -17.55066 -17.37777 -17.05732 -16.76950 -16.38407 -15.94277 -15.62650 -15.29466 -14.84891 -14.58360 -14.20425 -14.06579 -13.93523 -13.70925 -13.54908 -13.34844 -13.26600 -13.15176 -12.91133 -12.68539 -12.62945 -12.18072 -12.08332 -11.59993 -11.54597 -11.06275 -11.04685 -10.79865 -10.52991 -10.36908 -9.69147 -9.65777 -8.15135 -6.32025 0.00290 1.42175 1.46575 1.47748 1.54941 1.58625 1.69795 2.01038 2.07508 2.38841 2.62036 3.14760 3.62423 3.81511 3.96508 4.00279 4.08754 4.11883 4.48852 4.55789 4.58646 4.63663 4.73549 4.76065 4.90696 4.95154 5.06055 5.12728 5.14056 5.25605 5.40726 5.42357 5.53904 5.60804 5.78151 5.83362 5.90718 6.16618 6.32023 6.74982 6.82039 6.93849 7.32265 7.48713 8.89914 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.003213 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.551217 B = 8712.403160 C = 9108.263881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.695 5.695 14 C 0.500 3.500 15 O -0.576 6.576 16 C 0.130 3.870 17 H 0.118 0.882 18 C -0.151 4.151 19 N -0.698 5.698 20 C 0.606 3.394 21 O -0.553 6.553 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.232 4.232 25 C 0.008 3.992 26 O -0.177 6.177 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.414 0.586 38 H 0.165 0.835 39 H 0.188 0.812 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 9.899 -11.649 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.177 3.823 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.344 5.344 14 C 0.285 3.715 15 O -0.457 6.457 16 C 0.022 3.978 17 H 0.136 0.864 18 C -0.209 4.209 19 N -0.349 5.349 20 C 0.394 3.606 21 O -0.434 6.434 22 C -0.165 4.165 23 C -0.139 4.139 24 C -0.250 4.250 25 C -0.062 4.062 26 O -0.073 6.073 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.252 0.748 38 H 0.182 0.818 39 H 0.205 0.795 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.496 9.530 -11.264 19.996 hybrid contribution 0.874 -0.137 0.481 1.007 sum -12.622 9.393 -10.782 19.074 Atomic orbital electron populations 1.21677 0.97068 0.99118 1.00198 1.21809 0.93645 0.99326 1.01396 1.18398 0.93694 0.89060 0.81163 0.97849 1.21547 0.91373 1.38967 1.06706 0.90839 1.25730 1.03103 0.94415 0.95088 1.70035 1.37066 1.38324 1.09836 0.85461 0.79359 0.78447 0.77451 1.19618 1.21392 1.19051 1.46180 1.15022 1.55341 1.17860 1.20781 0.82407 0.78878 0.89405 1.90664 1.52149 1.61140 1.41760 1.20857 0.83130 0.98032 0.95757 0.86443 1.22086 0.98929 0.97040 1.02854 1.45688 1.14468 1.64437 1.10313 1.16724 0.82491 0.77323 0.84090 1.90839 1.72481 1.53481 1.26554 1.21794 0.95668 1.13681 0.85390 1.22282 0.92922 0.98404 1.00313 1.22242 1.00684 1.07728 0.94359 1.25423 0.84015 0.97793 0.98939 1.84108 1.26879 1.63209 1.33084 0.95263 0.93771 0.94029 0.90885 0.94082 0.92631 0.75905 0.90442 0.91965 0.89026 0.74850 0.81760 0.79509 0.73153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.82 2.24 44.24 0.10 13.91 16 4 H 0.00 0.21 7.58 -2.38 -0.02 0.19 16 5 C -0.55 -28.00 8.73 25.60 0.22 -27.78 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -51.30 11.29 21.45 0.24 -51.05 16 9 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.70 -27.13 4.91 -446.09 -2.19 -29.32 16 14 C 0.50 18.67 5.79 87.66 0.51 19.18 16 15 O -0.58 -25.51 12.98 -3.03 -0.04 -25.55 16 16 C 0.13 3.84 2.98 44.24 0.13 3.97 16 17 H 0.12 3.36 7.58 -2.39 -0.02 3.34 16 18 C -0.15 -3.68 9.38 71.98 0.68 -3.00 16 19 N -0.70 -20.49 4.95 -450.09 -2.23 -22.72 16 20 C 0.61 17.82 7.75 86.44 0.67 18.49 16 21 O -0.55 -18.38 16.53 -4.34 -0.07 -18.45 16 22 C -0.11 -2.87 7.13 24.07 0.17 -2.69 16 23 C -0.12 -2.43 10.62 22.39 0.24 -2.19 16 24 C -0.23 -3.23 10.87 22.07 0.24 -2.99 16 25 C 0.01 0.10 12.08 67.10 0.81 0.91 16 26 O -0.18 -3.92 10.40 -5.10 -0.05 -3.98 16 27 H 0.03 1.38 7.85 -2.39 -0.02 1.37 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.78 5.65 -2.38 -0.01 1.77 16 30 H 0.07 3.96 5.95 -2.39 -0.01 3.94 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 33 H 0.41 13.35 7.96 -92.71 -0.74 12.61 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.96 7.57 -2.38 -0.02 1.95 16 37 H 0.41 12.41 7.54 -92.71 -0.70 11.71 16 38 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.25 0.91 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -67.98 339.20 2.32 -65.65 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.36 Total: 33.63 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.99 Total: 8.53 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.18 Total: -103.10 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -0.16 Total: -47.98 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -67.98 2.32 -65.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183920552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.369 kcal (2) G-P(sol) polarization free energy of solvation -67.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds