Wall clock time and date at job start Tue Mar 31 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47374 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46939 * 120.00489 * 9 7 5 12 12 H 1.48503 * 109.47493 * 240.00132 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 18 18 C 1.53000 * 109.47245 * 59.72201 * 16 14 13 19 19 N 1.46491 * 109.46957 * 179.72354 * 16 14 13 20 20 C 1.34784 * 120.00079 * 154.99910 * 19 16 14 21 21 O 1.21606 * 119.99613 * 359.97438 * 20 19 16 22 22 C 1.47384 * 119.99880 * 179.97438 * 20 19 16 23 23 C 1.47013 * 127.18862 * 179.97438 * 22 20 19 24 24 C 1.34176 * 105.95838 * 179.97438 * 23 22 20 25 25 O 1.34224 * 109.11733 * 359.97438 * 24 23 22 26 26 C 1.33647 * 110.91100 * 359.76420 * 25 24 23 27 27 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 28 28 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 29 29 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 32 32 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 34 34 H 1.08996 * 109.46783 * 59.99559 * 18 16 14 35 35 H 1.08994 * 109.47175 * 180.02562 * 18 16 14 36 36 H 1.09001 * 109.46739 * 299.99817 * 18 16 14 37 37 H 0.96998 * 120.00235 * 334.99701 * 19 16 14 38 38 H 1.08005 * 127.02807 * 359.94794 * 23 22 20 39 39 H 1.08001 * 125.44589 * 179.97438 * 24 23 22 40 40 H 1.07997 * 125.80528 * 180.26395 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5988 1.5451 0.1934 11 1 6.4001 1.6155 2.6090 12 1 6.4962 -0.5192 1.4625 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 1 0.7225 4.1501 -2.8716 18 6 0.0816 2.3127 -3.7959 19 7 -1.3266 3.8608 -2.5304 20 6 -1.7224 4.8945 -3.2995 21 8 -0.9498 5.3890 -4.0979 22 6 -3.0915 5.4253 -3.1729 23 6 -3.6858 6.5393 -3.9260 24 6 -4.9437 6.6600 -3.4749 25 8 -5.1627 5.7323 -2.5299 26 6 -4.0741 4.9814 -2.3372 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0619 2.9494 33 1 2.2719 2.1232 -1.9977 34 1 -0.6067 1.4955 -3.5808 35 1 -0.2080 2.7963 -4.7288 36 1 1.0941 1.9199 -3.8898 37 1 -1.9427 3.4666 -1.8934 38 1 -3.2075 7.1385 -4.6867 39 1 -5.6648 7.3874 -3.8174 40 1 -3.9863 4.1638 -1.6371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183960425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:30 Heat of formation + Delta-G solvation = -65.806515 kcal Electronic energy + Delta-G solvation = -23546.943800 eV Core-core repulsion = 19942.363771 eV Total energy + Delta-G solvation = -3604.580029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73419 -40.01227 -38.70598 -35.45796 -34.58330 -33.16642 -32.54698 -31.40066 -30.53905 -29.39795 -26.98368 -24.87988 -23.50973 -22.69862 -21.67347 -20.40579 -20.06818 -19.42948 -18.79393 -17.18978 -16.50946 -16.34227 -16.02191 -15.43129 -15.20538 -15.04975 -14.83071 -14.42902 -14.12213 -13.55443 -13.19633 -13.11709 -12.83183 -12.72275 -12.57886 -12.24841 -11.93131 -11.68509 -11.38030 -11.28408 -11.00787 -10.88693 -10.35384 -10.25803 -10.08681 -10.02198 -9.70346 -9.34667 -9.10231 -9.05809 -8.92001 -8.55330 -7.93671 -6.17144 -4.26581 1.17141 1.86981 2.69478 3.01425 3.18526 3.21407 3.29784 3.32225 3.32803 4.00828 4.33265 4.39572 4.48826 4.87350 5.13250 5.15343 5.19702 5.31264 5.34940 5.44390 5.68236 5.69111 5.86371 6.05443 6.16897 6.31941 6.37416 6.38052 6.57998 6.71553 6.96378 7.11162 7.27486 7.33978 7.50653 7.55460 7.65955 7.83392 8.11829 8.17945 8.54922 8.70181 8.98341 9.40793 10.88187 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.003176 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.507279 B = 8813.380718 C = 9130.093512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.500 3.500 15 O -0.548 6.548 16 C 0.122 3.878 17 H 0.110 0.890 18 C -0.157 4.157 19 N -0.704 5.704 20 C 0.589 3.411 21 O -0.541 6.541 22 C -0.234 4.234 23 C -0.165 4.165 24 C -0.044 4.044 25 O -0.175 6.175 26 C 0.025 3.975 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.264 0.736 33 H 0.391 0.609 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.159 0.841 39 H 0.208 0.792 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 6.775 -10.805 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.283 3.717 15 O -0.427 6.427 16 C 0.013 3.987 17 H 0.128 0.872 18 C -0.215 4.215 19 N -0.357 5.357 20 C 0.377 3.623 21 O -0.419 6.419 22 C -0.238 4.238 23 C -0.184 4.184 24 C -0.110 4.110 25 O -0.070 6.070 26 C -0.045 4.045 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.244 0.756 38 H 0.177 0.823 39 H 0.225 0.775 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.757 6.953 -10.342 18.562 hybrid contribution 1.229 -0.192 0.005 1.243 sum -12.529 6.761 -10.337 17.593 Atomic orbital electron populations 1.21840 0.98412 0.98081 1.01085 1.21936 0.92571 0.99721 1.02415 1.18835 0.94353 0.89187 0.80752 0.93217 1.21264 0.90636 1.39048 1.06372 0.91952 1.24880 0.98673 0.94746 0.95351 1.69897 1.35087 1.37587 1.09361 0.86398 0.84783 0.77787 0.78172 1.19690 1.20886 1.20859 1.46461 1.14240 1.55189 1.18763 1.20239 0.83400 0.79563 0.88467 1.90653 1.51601 1.60176 1.40307 1.20873 0.85019 0.98053 0.94729 0.87201 1.22099 1.03285 0.98473 0.97661 1.45578 1.14361 1.34318 1.41455 1.17226 0.85694 0.78996 0.80430 1.90773 1.54461 1.59610 1.37043 1.21516 0.95626 1.02662 1.04016 1.22782 0.94073 0.98937 1.02621 1.23944 0.98540 0.95477 0.93049 1.83802 1.37375 1.37684 1.48115 1.24582 0.83861 0.96347 0.99717 0.93163 0.94375 0.95817 0.94931 0.88216 0.92584 0.77653 0.91865 0.91329 0.90678 0.75629 0.82307 0.77519 0.76974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.68 8.73 -34.44 -0.30 -13.98 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.10 11.29 55.43 0.63 -23.47 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.70 -13.55 4.91 -54.93 -0.27 -13.82 16 14 C 0.50 9.10 5.79 -10.98 -0.06 9.03 16 15 O -0.55 -11.42 12.97 5.55 0.07 -11.34 16 16 C 0.12 1.80 2.99 -69.09 -0.21 1.59 16 17 H 0.11 1.67 7.58 -51.93 -0.39 1.28 16 18 C -0.16 -1.97 9.38 37.16 0.35 -1.62 16 19 N -0.70 -9.71 4.94 -56.03 -0.28 -9.99 16 20 C 0.59 8.54 7.78 -12.53 -0.10 8.44 16 21 O -0.54 -9.45 16.64 5.27 0.09 -9.36 16 22 C -0.23 -2.80 6.31 -103.28 -0.65 -3.45 16 23 C -0.16 -1.70 11.01 -37.46 -0.41 -2.11 16 24 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 25 O -0.17 -1.63 10.52 7.64 0.08 -1.55 16 26 C 0.03 0.24 11.61 30.08 0.35 0.59 16 27 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 28 H 0.04 0.75 5.64 -51.93 -0.29 0.46 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.39 6.63 7.95 -40.82 -0.32 6.31 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 7.55 -51.93 -0.39 0.47 16 37 H 0.41 5.15 6.76 -40.82 -0.28 4.87 16 38 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.21 1.42 7.47 -52.49 -0.39 1.03 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -31.68 338.34 -5.62 -37.30 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.26 Total: 11.08 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.76 Total: 0.82 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.08 Total: -47.28 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.24 Total: -22.25 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.68 -5.62 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183960425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.509 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds