Wall clock time and date at job start Tue Mar 31 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47374 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46939 * 120.00489 * 9 7 5 12 12 H 1.48503 * 109.47493 * 240.00132 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 18 18 C 1.53000 * 109.47245 * 59.72201 * 16 14 13 19 19 N 1.46491 * 109.46957 * 179.72354 * 16 14 13 20 20 C 1.34784 * 120.00079 * 154.99910 * 19 16 14 21 21 O 1.21606 * 119.99613 * 359.97438 * 20 19 16 22 22 C 1.47384 * 119.99880 * 179.97438 * 20 19 16 23 23 C 1.47013 * 127.18862 * 179.97438 * 22 20 19 24 24 C 1.34176 * 105.95838 * 179.97438 * 23 22 20 25 25 O 1.34224 * 109.11733 * 359.97438 * 24 23 22 26 26 C 1.33647 * 110.91100 * 359.76420 * 25 24 23 27 27 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 28 28 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 29 29 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 32 32 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 34 34 H 1.08996 * 109.46783 * 59.99559 * 18 16 14 35 35 H 1.08994 * 109.47175 * 180.02562 * 18 16 14 36 36 H 1.09001 * 109.46739 * 299.99817 * 18 16 14 37 37 H 0.96998 * 120.00235 * 334.99701 * 19 16 14 38 38 H 1.08005 * 127.02807 * 359.94794 * 23 22 20 39 39 H 1.08001 * 125.44589 * 179.97438 * 24 23 22 40 40 H 1.07997 * 125.80528 * 180.26395 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5988 1.5451 0.1934 11 1 6.4001 1.6155 2.6090 12 1 6.4962 -0.5192 1.4625 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 1 0.7225 4.1501 -2.8716 18 6 0.0816 2.3127 -3.7959 19 7 -1.3266 3.8608 -2.5304 20 6 -1.7224 4.8945 -3.2995 21 8 -0.9498 5.3890 -4.0979 22 6 -3.0915 5.4253 -3.1729 23 6 -3.6858 6.5393 -3.9260 24 6 -4.9437 6.6600 -3.4749 25 8 -5.1627 5.7323 -2.5299 26 6 -4.0741 4.9814 -2.3372 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0619 2.9494 33 1 2.2719 2.1232 -1.9977 34 1 -0.6067 1.4955 -3.5808 35 1 -0.2080 2.7963 -4.7288 36 1 1.0941 1.9199 -3.8898 37 1 -1.9427 3.4666 -1.8934 38 1 -3.2075 7.1385 -4.6867 39 1 -5.6648 7.3874 -3.8174 40 1 -3.9863 4.1638 -1.6371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183960425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:30 Heat of formation + Delta-G solvation = -88.401204 kcal Electronic energy + Delta-G solvation = -23547.923580 eV Core-core repulsion = 19942.363771 eV Total energy + Delta-G solvation = -3605.559809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.47646 -41.35734 -40.07012 -37.12207 -35.95014 -34.42534 -33.94610 -32.95785 -31.74995 -30.31800 -28.82956 -26.04260 -25.09458 -24.07089 -22.40426 -21.92747 -21.16560 -21.07137 -19.82092 -18.68898 -17.73516 -17.51050 -17.11642 -16.89943 -16.65411 -16.43980 -15.99841 -15.76146 -15.50471 -14.68347 -14.59005 -14.55880 -14.18379 -13.83632 -13.54441 -13.42047 -13.32608 -13.25253 -13.16051 -12.86940 -12.69782 -12.63952 -12.12956 -12.03074 -11.55557 -11.26873 -11.02814 -10.87607 -10.75516 -10.52765 -10.24531 -9.74421 -9.65900 -8.16150 -6.32561 0.32734 1.13723 1.43678 1.46035 1.56695 1.71402 1.81586 2.08710 2.28016 2.38617 2.65192 3.13855 3.59272 3.75537 3.81011 4.01955 4.12067 4.15395 4.53272 4.54408 4.61320 4.65820 4.75606 4.78857 4.80408 5.00316 5.09064 5.16018 5.22942 5.31294 5.34898 5.46222 5.56781 5.61220 5.81428 5.91600 5.98769 6.18761 6.42582 6.75155 6.89027 7.09656 7.32224 7.49013 8.89016 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.003176 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.507279 B = 8813.380718 C = 9130.093512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.697 5.697 14 C 0.502 3.498 15 O -0.574 6.574 16 C 0.132 3.868 17 H 0.107 0.893 18 C -0.149 4.149 19 N -0.701 5.701 20 C 0.590 3.410 21 O -0.578 6.578 22 C -0.269 4.269 23 C -0.194 4.194 24 C -0.022 4.022 25 O -0.176 6.176 26 C 0.042 3.958 27 H 0.027 0.973 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.413 0.587 38 H 0.159 0.841 39 H 0.250 0.750 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.305 6.953 -12.022 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.345 5.345 14 C 0.287 3.713 15 O -0.455 6.455 16 C 0.023 3.977 17 H 0.125 0.875 18 C -0.208 4.208 19 N -0.354 5.354 20 C 0.379 3.621 21 O -0.459 6.459 22 C -0.273 4.273 23 C -0.214 4.214 24 C -0.088 4.088 25 O -0.071 6.071 26 C -0.029 4.029 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.251 0.749 38 H 0.176 0.824 39 H 0.266 0.734 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.530 7.135 -11.584 19.905 hybrid contribution 1.380 -0.196 0.408 1.452 sum -13.150 6.939 -11.176 18.601 Atomic orbital electron populations 1.21682 0.96665 0.99244 1.00473 1.21777 0.94060 0.98845 1.01348 1.18405 0.93519 0.89348 0.81120 0.98032 1.21617 0.91615 1.38759 1.06613 0.91172 1.25700 1.02973 0.94475 0.95118 1.70039 1.36830 1.38378 1.09867 0.85386 0.79586 0.77786 0.78110 1.18617 1.21196 1.20461 1.46199 1.15160 1.55372 1.17800 1.20765 0.82492 0.78758 0.89291 1.90644 1.52266 1.60971 1.41638 1.20754 0.85573 0.98176 0.93187 0.87491 1.22066 1.04313 0.97820 0.96555 1.45562 1.13956 1.34294 1.41543 1.17571 0.86445 0.78417 0.79633 1.90742 1.55734 1.60734 1.38665 1.21503 0.95020 1.04469 1.06342 1.22958 0.95307 0.99431 1.03689 1.24680 0.98281 0.94666 0.91142 1.83848 1.37100 1.37816 1.48318 1.24975 0.83090 0.96083 0.98743 0.95370 0.93285 0.93695 0.93949 0.91153 0.92636 0.76046 0.91394 0.90958 0.89366 0.74926 0.82353 0.73367 0.74639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.51 71.98 0.61 -4.49 16 2 C -0.12 -5.64 5.45 30.60 0.17 -5.48 16 3 C 0.28 13.59 2.24 44.24 0.10 13.69 16 4 H 0.00 0.10 7.58 -2.38 -0.02 0.09 16 5 C -0.55 -28.09 8.73 25.60 0.22 -27.86 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.93 5.29 84.65 0.45 1.37 16 8 N -0.91 -50.89 11.29 21.45 0.24 -50.65 16 9 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.70 -26.76 4.91 -446.09 -2.19 -28.95 16 14 C 0.50 18.07 5.79 87.66 0.51 18.58 16 15 O -0.57 -24.03 12.97 -3.04 -0.04 -24.07 16 16 C 0.13 3.78 2.99 44.25 0.13 3.91 16 17 H 0.11 3.20 7.58 -2.38 -0.02 3.18 16 18 C -0.15 -3.49 9.38 71.98 0.68 -2.81 16 19 N -0.70 -18.87 4.94 -449.42 -2.22 -21.09 16 20 C 0.59 16.95 7.78 86.65 0.67 17.63 16 21 O -0.58 -20.33 16.64 -4.05 -0.07 -20.40 16 22 C -0.27 -6.23 6.31 -18.99 -0.12 -6.35 16 23 C -0.19 -3.81 11.01 23.65 0.26 -3.55 16 24 C -0.02 -0.30 12.03 66.89 0.80 0.51 16 25 O -0.18 -2.84 10.52 4.43 0.05 -2.79 16 26 C 0.04 0.72 11.61 67.39 0.78 1.50 16 27 H 0.03 1.26 7.85 -2.38 -0.02 1.24 16 28 H 0.05 1.89 5.64 -2.39 -0.01 1.88 16 29 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 3.73 5.95 -2.39 -0.01 3.71 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.40 13.29 7.95 -92.71 -0.74 12.55 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.83 7.55 -2.39 -0.02 1.81 16 37 H 0.41 10.08 6.76 -92.71 -0.63 9.45 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.25 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.24 2.65 7.47 -2.91 -0.02 2.63 16 Total: -1.00 -69.66 338.34 2.78 -66.88 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.28 Total: 30.95 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.27 Total: 6.64 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.17 Total: -100.69 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.06 Total: -47.26 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -69.66 2.78 -66.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183960425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.517 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds