Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 H 1.09003 * 109.47203 * 185.15621 * 3 2 1 5 5 C 1.50697 * 109.47392 * 305.15897 * 3 2 1 6 6 H 1.08005 * 119.99848 * 119.99958 * 5 3 2 7 7 C 1.37874 * 120.00303 * 300.00095 * 5 3 2 8 8 N 1.31523 * 119.99649 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46853 * 90.00153 * 9 7 5 11 11 H 1.48494 * 109.47130 * 210.00133 * 9 7 5 12 12 H 1.48494 * 109.47132 * 330.00521 * 9 7 5 13 13 N 1.46904 * 109.47168 * 65.16311 * 3 2 1 14 14 C 1.46904 * 110.99983 * 85.89431 * 13 3 2 15 15 C 1.50700 * 109.46959 * 174.80833 * 14 13 3 16 16 C 1.38289 * 119.94238 * 270.02281 * 15 14 13 17 17 C 1.38124 * 120.05541 * 179.72080 * 16 15 14 18 18 C 1.38762 * 119.93987 * 0.53420 * 17 16 15 19 19 O 1.35902 * 120.05085 * 179.74627 * 18 17 16 20 20 C 1.42892 * 117.00431 * 359.71756 * 19 18 17 21 21 C 1.38706 * 119.88982 * 359.46896 * 18 17 16 22 22 N 1.48006 * 120.02904 * 180.23193 * 21 18 17 23 23 O 1.21795 * 119.99730 * 179.97438 * 22 21 18 24 24 O 1.21799 * 119.99428 * 359.97438 * 22 21 18 25 25 C 1.38166 * 119.94185 * 0.24952 * 21 18 17 26 26 H 1.09000 * 109.47051 * 174.84486 * 1 2 3 27 27 H 1.09005 * 109.47383 * 294.84830 * 1 2 3 28 28 H 1.08997 * 109.47615 * 54.84620 * 1 2 3 29 29 H 1.09000 * 109.47396 * 240.00524 * 2 1 3 30 30 H 1.08997 * 109.47119 * 119.99784 * 2 1 3 31 31 H 0.97001 * 119.99389 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99561 * 321.94451 * 13 3 2 33 33 H 1.09001 * 109.47033 * 54.81341 * 14 13 3 34 34 H 1.08997 * 109.47227 * 294.80762 * 14 13 3 35 35 H 1.08002 * 119.97510 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.03168 * 180.27155 * 17 16 15 37 37 H 1.09004 * 109.47299 * 300.00316 * 20 19 18 38 38 H 1.09001 * 109.47057 * 60.00230 * 20 19 18 39 39 H 1.09005 * 109.47479 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.97114 * 179.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4360 2.1889 -1.1616 6 1 0.8267 3.0628 -0.9838 7 6 1.6610 1.7561 -2.4511 8 7 2.4025 0.6915 -2.6674 9 14 0.9118 2.6809 -3.8909 10 1 1.8531 3.7358 -4.3452 11 1 0.6528 1.7349 -5.0058 12 1 -0.3658 3.3071 -3.4660 13 7 1.6546 2.0981 1.2569 14 6 2.6431 1.8366 2.3116 15 6 2.2832 2.6255 3.5442 16 6 2.7807 3.9045 3.7148 17 6 2.4477 4.6318 4.8408 18 6 1.6221 4.0739 5.8066 19 8 1.2972 4.7855 6.9178 20 6 1.8461 6.1001 7.0299 21 6 1.1245 2.7908 5.6331 22 7 0.2395 2.1947 6.6587 23 8 -0.1975 1.0682 6.5056 24 8 -0.0516 2.8307 7.6559 25 6 1.4559 2.0697 4.5021 26 1 -0.3633 -1.0235 -0.0923 27 1 -0.3634 0.4319 0.9325 28 1 -0.3634 0.5917 -0.8402 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.5611 0.3873 -3.5747 32 1 0.7320 1.8104 1.5467 33 1 3.6322 2.1358 1.9648 34 1 2.6478 0.7730 2.5496 35 1 3.4269 4.3366 2.9650 36 1 2.8329 5.6322 4.9716 37 1 2.9345 6.0408 7.0280 38 1 1.5137 6.7057 6.1868 39 1 1.5091 6.5564 7.9607 40 1 1.0690 1.0705 4.3667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184084620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -17.640505 kcal Electronic energy + Delta-G solvation = -23503.096851 eV Core-core repulsion = 19900.605457 eV Total energy + Delta-G solvation = -3602.491394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07594 -40.41950 -38.37155 -36.45241 -36.29019 -33.19521 -32.11787 -31.33771 -29.77312 -27.97729 -26.62824 -26.28249 -24.37734 -23.26993 -22.66263 -21.43797 -19.42104 -19.20222 -18.54084 -17.92257 -17.43125 -16.60893 -16.23392 -16.11560 -15.04585 -14.98398 -14.79827 -14.38392 -14.21625 -13.60151 -13.22455 -12.84452 -12.63789 -12.52216 -12.15159 -11.93585 -11.71351 -11.69400 -11.38812 -11.36904 -10.96796 -10.95031 -10.89835 -10.75165 -10.57929 -10.06602 -9.91071 -9.72524 -9.64459 -9.10193 -8.65008 -8.41617 -7.40084 -6.05048 -4.07043 -0.04472 0.87527 1.43533 1.52316 2.67716 3.18755 3.27619 3.34957 3.38499 4.18360 4.32983 4.38368 4.62414 4.75430 4.77023 4.83981 4.87348 5.13133 5.20428 5.26886 5.35105 5.54208 5.69499 5.77504 5.95068 6.18847 6.26050 6.30702 6.33117 6.42262 6.50350 6.78849 6.82685 7.14005 7.18581 7.45058 7.61018 7.79435 7.83037 8.16675 8.36950 8.48988 8.98147 9.56927 11.01859 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.003526 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.820145 B = 7939.818693 C = 8622.375245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.097 3.903 15 C -0.097 4.097 16 C -0.005 4.005 17 C -0.214 4.214 18 C 0.185 3.815 19 O -0.286 6.286 20 C 0.020 3.980 21 C -0.081 4.081 22 N 0.040 4.960 23 O -0.183 6.183 24 O -0.148 6.148 25 C -0.020 4.020 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 7.672 15.521 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.033 4.033 15 C -0.099 4.099 16 C -0.023 4.023 17 C -0.233 4.233 18 C 0.136 3.864 19 O -0.197 6.197 20 C -0.074 4.074 21 C -0.165 4.165 22 N 0.556 4.444 23 O -0.392 6.392 24 O -0.367 6.367 25 C -0.039 4.039 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.871 8.371 14.849 17.286 hybrid contribution -0.649 -0.459 -0.498 0.938 sum 2.221 7.912 14.352 16.538 Atomic orbital electron populations 1.21604 0.97579 0.98875 1.00784 1.22116 0.95128 1.00944 1.00406 1.19261 0.96076 0.88725 0.85116 0.94778 1.21027 1.30748 1.11579 0.89573 0.92020 1.24907 0.95496 0.95126 0.98751 1.69878 1.38923 1.23846 1.20808 0.86563 0.79614 0.79523 0.82103 1.20813 1.21402 1.19936 1.60928 1.03632 1.63333 1.03198 1.20888 0.98226 0.95642 0.88539 1.20041 0.97827 0.95560 0.96431 1.21382 0.94075 0.92253 0.94628 1.21310 1.03723 1.02509 0.95774 1.18633 0.91820 0.88837 0.87146 1.86386 1.67958 1.28503 1.36852 1.23263 0.99061 0.81119 1.03998 1.20446 1.06775 0.94461 0.94857 1.43342 0.99508 1.00380 1.01144 1.94532 1.56186 1.04425 1.84049 1.94550 1.61945 1.61828 1.18350 1.20880 0.93499 1.00331 0.89220 0.95609 0.95435 0.91191 0.88764 0.97002 0.93032 0.85263 0.89958 0.94695 0.83409 0.83331 0.92091 0.91960 0.87350 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.40 37.15 0.35 -2.35 16 2 C -0.15 -3.24 5.51 -26.73 -0.15 -3.39 16 3 C 0.22 4.93 2.33 -68.86 -0.16 4.77 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.49 -12.58 7.25 -34.44 -0.25 -12.83 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -24.28 11.38 55.43 0.63 -23.65 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -12.92 6.19 -109.21 -0.68 -13.60 16 14 C 0.10 1.48 5.63 -4.97 -0.03 1.45 16 15 C -0.10 -1.27 5.44 -104.60 -0.57 -1.84 16 16 C 0.00 -0.05 9.69 -39.60 -0.38 -0.44 16 17 C -0.21 -2.14 9.04 -39.43 -0.36 -2.49 16 18 C 0.18 2.27 6.67 -39.22 -0.26 2.01 16 19 O -0.29 -3.32 8.51 -41.55 -0.35 -3.67 16 20 C 0.02 0.13 9.81 101.05 0.99 1.12 16 21 C -0.08 -1.15 6.87 -79.81 -0.55 -1.70 16 22 N 0.04 0.64 4.45 34.03 0.15 0.79 16 23 O -0.18 -3.07 18.45 -29.46 -0.54 -3.62 16 24 O -0.15 -2.46 17.24 -36.49 -0.63 -3.09 16 25 C -0.02 -0.27 9.20 -39.61 -0.36 -0.63 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.51 6.63 -51.93 -0.34 0.16 16 28 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 29 H 0.09 2.37 6.22 -51.93 -0.32 2.05 16 30 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 32 H 0.33 6.18 6.69 -39.29 -0.26 5.92 16 33 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 34 H 0.03 0.53 7.48 -51.93 -0.39 0.14 16 35 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.15 1.00 6.30 -52.49 -0.33 0.67 16 37 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 38 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.16 2.04 7.61 -52.49 -0.40 1.64 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -29.28 335.87 -8.41 -37.69 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.21 Total: 3.33 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.82 Total: -14.88 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.11 Total: -36.46 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.53 Total: -10.37 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.28 -8.41 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184084620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.053 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds