Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 H 1.09003 * 109.47203 * 185.15621 * 3 2 1 5 5 C 1.50697 * 109.47392 * 305.15897 * 3 2 1 6 6 H 1.08005 * 119.99848 * 119.99958 * 5 3 2 7 7 C 1.37874 * 120.00303 * 300.00095 * 5 3 2 8 8 N 1.31523 * 119.99649 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46853 * 90.00153 * 9 7 5 11 11 H 1.48494 * 109.47130 * 210.00133 * 9 7 5 12 12 H 1.48494 * 109.47132 * 330.00521 * 9 7 5 13 13 N 1.46904 * 109.47168 * 65.16311 * 3 2 1 14 14 C 1.46904 * 110.99983 * 85.89431 * 13 3 2 15 15 C 1.50700 * 109.46959 * 174.80833 * 14 13 3 16 16 C 1.38289 * 119.94238 * 270.02281 * 15 14 13 17 17 C 1.38124 * 120.05541 * 179.72080 * 16 15 14 18 18 C 1.38762 * 119.93987 * 0.53420 * 17 16 15 19 19 O 1.35902 * 120.05085 * 179.74627 * 18 17 16 20 20 C 1.42892 * 117.00431 * 359.71756 * 19 18 17 21 21 C 1.38706 * 119.88982 * 359.46896 * 18 17 16 22 22 N 1.48006 * 120.02904 * 180.23193 * 21 18 17 23 23 O 1.21795 * 119.99730 * 179.97438 * 22 21 18 24 24 O 1.21799 * 119.99428 * 359.97438 * 22 21 18 25 25 C 1.38166 * 119.94185 * 0.24952 * 21 18 17 26 26 H 1.09000 * 109.47051 * 174.84486 * 1 2 3 27 27 H 1.09005 * 109.47383 * 294.84830 * 1 2 3 28 28 H 1.08997 * 109.47615 * 54.84620 * 1 2 3 29 29 H 1.09000 * 109.47396 * 240.00524 * 2 1 3 30 30 H 1.08997 * 109.47119 * 119.99784 * 2 1 3 31 31 H 0.97001 * 119.99389 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99561 * 321.94451 * 13 3 2 33 33 H 1.09001 * 109.47033 * 54.81341 * 14 13 3 34 34 H 1.08997 * 109.47227 * 294.80762 * 14 13 3 35 35 H 1.08002 * 119.97510 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.03168 * 180.27155 * 17 16 15 37 37 H 1.09004 * 109.47299 * 300.00316 * 20 19 18 38 38 H 1.09001 * 109.47057 * 60.00230 * 20 19 18 39 39 H 1.09005 * 109.47479 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.97114 * 179.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4360 2.1889 -1.1616 6 1 0.8267 3.0628 -0.9838 7 6 1.6610 1.7561 -2.4511 8 7 2.4025 0.6915 -2.6674 9 14 0.9118 2.6809 -3.8909 10 1 1.8531 3.7358 -4.3452 11 1 0.6528 1.7349 -5.0058 12 1 -0.3658 3.3071 -3.4660 13 7 1.6546 2.0981 1.2569 14 6 2.6431 1.8366 2.3116 15 6 2.2832 2.6255 3.5442 16 6 2.7807 3.9045 3.7148 17 6 2.4477 4.6318 4.8408 18 6 1.6221 4.0739 5.8066 19 8 1.2972 4.7855 6.9178 20 6 1.8461 6.1001 7.0299 21 6 1.1245 2.7908 5.6331 22 7 0.2395 2.1947 6.6587 23 8 -0.1975 1.0682 6.5056 24 8 -0.0516 2.8307 7.6559 25 6 1.4559 2.0697 4.5021 26 1 -0.3633 -1.0235 -0.0923 27 1 -0.3634 0.4319 0.9325 28 1 -0.3634 0.5917 -0.8402 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.5611 0.3873 -3.5747 32 1 0.7320 1.8104 1.5467 33 1 3.6322 2.1358 1.9648 34 1 2.6478 0.7730 2.5496 35 1 3.4269 4.3366 2.9650 36 1 2.8329 5.6322 4.9716 37 1 2.9345 6.0408 7.0280 38 1 1.5137 6.7057 6.1868 39 1 1.5091 6.5564 7.9607 40 1 1.0690 1.0705 4.3667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184084620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -34.099837 kcal Electronic energy + Delta-G solvation = -23503.810581 eV Core-core repulsion = 19900.605457 eV Total energy + Delta-G solvation = -3603.205125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.22730 -41.35427 -39.37708 -37.99719 -37.51247 -34.75041 -33.29582 -32.79065 -31.09290 -28.78480 -28.16010 -27.47613 -25.77642 -24.95037 -23.64117 -22.52532 -21.19153 -20.23007 -19.72397 -18.86030 -18.60532 -18.12844 -17.47757 -16.86372 -16.76729 -16.41781 -15.77666 -15.63222 -15.11189 -15.08474 -14.66527 -14.30126 -13.98560 -13.63162 -13.48947 -13.06899 -13.04313 -12.79342 -12.69181 -12.63602 -12.43741 -12.43258 -12.24168 -12.15227 -11.98920 -11.85151 -11.63350 -11.41487 -10.97528 -10.65833 -10.40775 -9.61931 -8.96024 -8.03898 -6.11520 -1.14949 -0.05420 0.32948 0.43068 1.43910 1.46817 1.55147 1.92417 2.22411 2.47785 3.25617 3.26246 3.49131 3.64037 3.82857 3.90455 3.92412 4.28096 4.34533 4.37507 4.52417 4.54024 4.59969 4.64767 4.71084 4.73534 4.82163 4.88325 5.11355 5.15812 5.28239 5.34196 5.39289 5.43740 5.70573 5.76275 5.84336 5.99049 6.32953 6.57981 6.65799 6.79328 6.99803 7.56092 9.01148 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.003526 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.820145 B = 7939.818693 C = 8622.375245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.141 4.141 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.681 5.681 14 C 0.101 3.899 15 C -0.105 4.105 16 C 0.004 3.996 17 C -0.197 4.197 18 C 0.189 3.811 19 O -0.307 6.307 20 C 0.007 3.993 21 C -0.103 4.103 22 N 0.041 4.959 23 O -0.212 6.212 24 O -0.159 6.159 25 C -0.023 4.023 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.258 0.742 32 H 0.331 0.669 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.168 0.832 36 H 0.190 0.810 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 9.807 16.179 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.536 4.536 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.312 5.312 14 C -0.028 4.028 15 C -0.107 4.107 16 C -0.015 4.015 17 C -0.216 4.216 18 C 0.139 3.861 19 O -0.218 6.218 20 C -0.086 4.086 21 C -0.189 4.189 22 N 0.553 4.447 23 O -0.416 6.416 24 O -0.378 6.378 25 C -0.043 4.043 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.186 0.814 36 H 0.207 0.793 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.307 10.494 15.536 19.038 hybrid contribution -0.724 -0.994 -0.615 1.375 sum 2.583 9.501 14.922 17.877 Atomic orbital electron populations 1.21496 0.96319 0.99518 1.00723 1.21981 0.96191 1.00285 0.99588 1.18991 0.94177 0.89137 0.86352 0.97394 1.21266 1.30282 1.11313 0.90739 0.92931 1.25535 0.95988 0.95827 1.00920 1.70002 1.40049 1.24978 1.20983 0.85719 0.78965 0.78421 0.79476 1.20468 1.21513 1.19619 1.60779 1.04492 1.62857 1.03031 1.20840 0.97344 0.96242 0.88381 1.19790 0.98971 0.96459 0.95489 1.21660 0.93294 0.91231 0.95272 1.21669 1.02092 1.03743 0.94103 1.18855 0.91239 0.88164 0.87798 1.86381 1.68355 1.30597 1.36441 1.23673 1.00410 0.78939 1.05617 1.20618 1.07774 0.95735 0.94765 1.43631 0.99517 1.00177 1.01404 1.94514 1.57394 1.05199 1.84481 1.94517 1.62385 1.61745 1.19115 1.20817 0.93774 1.00316 0.89355 0.94175 0.93492 0.93591 0.91927 0.95372 0.93271 0.85101 0.89665 0.94698 0.81434 0.79336 0.90016 0.90376 0.85771 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.40 71.98 0.68 -4.31 16 2 C -0.14 -6.23 5.51 30.59 0.17 -6.06 16 3 C 0.22 10.17 2.33 44.17 0.10 10.27 16 4 H 0.01 0.41 7.70 -2.39 -0.02 0.39 16 5 C -0.50 -25.53 7.25 25.60 0.19 -25.34 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 7 C 0.02 0.82 5.28 84.65 0.45 1.27 16 8 N -0.92 -50.55 11.38 21.45 0.24 -50.31 16 9 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.68 -25.32 6.19 -499.44 -3.09 -28.42 16 14 C 0.10 2.99 5.63 85.56 0.48 3.47 16 15 C -0.11 -2.59 5.44 -19.85 -0.11 -2.70 16 16 C 0.00 0.08 9.69 22.25 0.22 0.29 16 17 C -0.20 -3.17 9.04 22.37 0.20 -2.97 16 18 C 0.19 4.20 6.67 22.51 0.15 4.35 16 19 O -0.31 -6.36 8.51 -71.29 -0.61 -6.97 16 20 C 0.01 0.06 9.81 113.37 1.11 1.18 16 21 C -0.10 -2.87 6.87 36.47 0.25 -2.62 16 22 N 0.04 1.35 4.45 -46.24 -0.21 1.14 16 23 O -0.21 -7.33 18.45 18.89 0.35 -6.98 16 24 O -0.16 -5.30 17.24 25.61 0.44 -4.86 16 25 C -0.02 -0.61 9.20 22.25 0.20 -0.40 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.69 6.63 -2.38 -0.02 1.67 16 28 H 0.04 2.07 6.85 -2.39 -0.02 2.05 16 29 H 0.06 3.19 6.22 -2.39 -0.01 3.18 16 30 H 0.03 1.12 7.50 -2.39 -0.02 1.10 16 31 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 32 H 0.33 12.10 6.69 -89.70 -0.60 11.50 16 33 H 0.08 2.47 7.87 -2.39 -0.02 2.45 16 34 H 0.03 1.04 7.48 -2.39 -0.02 1.02 16 35 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.19 1.48 6.30 -2.91 -0.02 1.46 16 37 H 0.08 0.43 7.67 -2.39 -0.02 0.41 16 38 H 0.08 0.49 7.65 -2.39 -0.02 0.47 16 39 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.15 3.99 7.61 -2.91 -0.02 3.96 16 Total: -1.00 -64.14 335.87 3.71 -60.42 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.47 Total: 15.20 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.09 Total: -23.57 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -3.06 Total: -77.58 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.14 3.71 -60.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184084620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.324 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds