Wall clock time and date at job start Tue Mar 31 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00183 * 60.00002 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47261 * 270.00294 * 9 7 5 11 11 H 1.48503 * 109.47007 * 30.00144 * 9 7 5 12 12 H 1.48494 * 109.47259 * 149.99760 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38289 * 119.94686 * 269.72506 * 15 14 13 17 17 C 1.38126 * 120.05586 * 179.72631 * 16 15 14 18 18 C 1.38751 * 119.94287 * 0.55111 * 17 16 15 19 19 O 1.35901 * 120.05450 * 179.70795 * 18 17 16 20 20 C 1.42900 * 116.99901 * 0.02562 * 19 18 17 21 21 C 1.38713 * 119.89088 * 359.72376 * 18 17 16 22 22 N 1.48002 * 120.03055 * 180.02562 * 21 18 17 23 23 O 1.21799 * 120.00187 * 179.97438 * 22 21 18 24 24 O 1.21803 * 119.99471 * 359.97331 * 22 21 18 25 25 C 1.38169 * 119.94230 * 0.02562 * 21 18 17 26 26 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 27 27 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 28 28 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 29 29 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 30 30 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 31 31 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 33 33 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 34 34 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 35 35 H 1.08002 * 119.96779 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.02599 * 180.25541 * 17 16 15 37 37 H 1.09002 * 109.46749 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46977 * 299.99832 * 20 19 18 39 39 H 1.08998 * 109.47221 * 60.00251 * 20 19 18 40 40 H 1.07994 * 119.97222 * 180.02562 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4565 8 7 1.1741 2.3936 3.4788 9 14 2.7456 0.2329 2.7457 10 1 1.8844 -0.9768 2.7596 11 1 3.7486 0.1140 1.6571 12 1 3.4437 0.3585 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 1.3493 1.7215 -4.4683 17 6 0.8960 2.2839 -5.6456 18 6 1.2351 3.5911 -5.9643 19 8 0.7952 4.1447 -7.1248 20 6 -0.0133 3.3235 -7.9699 21 6 2.0241 4.3317 -5.0965 22 7 2.3872 5.7264 -5.4331 23 8 3.0797 6.3765 -4.6706 24 8 1.9935 6.2242 -6.4728 25 6 2.4708 3.7662 -3.9176 26 1 -0.3634 -1.0233 0.0943 27 1 -0.3633 0.5934 0.8391 28 1 -0.3633 0.4301 -0.9333 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3431 2.0856 4.3830 32 1 0.7157 1.8142 -1.5318 33 1 3.5769 2.2925 -2.0419 34 1 2.7408 0.7747 -2.4491 35 1 1.0897 0.7025 -4.2220 36 1 0.2820 1.7051 -6.3198 37 1 -0.2955 3.8854 -8.8602 38 1 0.5506 2.4379 -8.2631 39 1 -0.9111 3.0207 -7.4311 40 1 3.0847 4.3425 -3.2415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184084638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:36 Heat of formation + Delta-G solvation = -7.594367 kcal Electronic energy + Delta-G solvation = -23551.526617 eV Core-core repulsion = 19949.470856 eV Total energy + Delta-G solvation = -3602.055761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08306 -40.47896 -38.48354 -36.77093 -36.28905 -33.25888 -32.15659 -31.68938 -30.05132 -28.06812 -26.99855 -26.36596 -24.53486 -23.30035 -22.72635 -21.52187 -19.68315 -19.23819 -18.53933 -17.99453 -17.42847 -16.65585 -16.54242 -16.16401 -15.41045 -15.20833 -14.87809 -14.54073 -14.11812 -13.80279 -13.35445 -13.11537 -12.74714 -12.65236 -12.49197 -12.42400 -12.02845 -11.71397 -11.45578 -11.36783 -11.11606 -10.94167 -10.93189 -10.83113 -10.63936 -10.51496 -9.97926 -9.80934 -9.49102 -9.23354 -8.74340 -8.59236 -7.58720 -6.09585 -4.06487 -0.08792 0.81201 1.38564 1.51002 2.62582 3.10389 3.20170 3.28725 3.33545 4.12584 4.22364 4.34738 4.50770 4.67657 4.71116 4.75845 4.77795 5.07624 5.10305 5.19777 5.21903 5.37472 5.55628 5.67456 5.76901 5.82304 5.88971 6.05158 6.05763 6.21916 6.40346 6.41293 6.64995 6.68599 6.73726 6.86810 7.17147 7.60907 7.76796 7.83132 8.13743 8.61499 9.01975 9.52188 11.03652 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003628 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.823063 B = 7716.257642 C = 8430.468921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.493 4.493 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.296 1.296 13 N -0.666 5.666 14 C 0.095 3.905 15 C -0.105 4.105 16 C -0.024 4.024 17 C -0.214 4.214 18 C 0.186 3.814 19 O -0.285 6.285 20 C 0.020 3.980 21 C -0.080 4.080 22 N 0.038 4.962 23 O -0.176 6.176 24 O -0.148 6.148 25 C 0.002 3.998 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.333 0.667 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -4.560 -21.116 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.198 4.198 3 C 0.077 3.923 4 H 0.053 0.947 5 C -0.531 4.531 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.224 1.224 13 N -0.297 5.297 14 C -0.034 4.034 15 C -0.106 4.106 16 C -0.042 4.042 17 C -0.233 4.233 18 C 0.137 3.863 19 O -0.196 6.196 20 C -0.074 4.074 21 C -0.165 4.165 22 N 0.556 4.444 23 O -0.386 6.386 24 O -0.367 6.367 25 C -0.017 4.017 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.894 -4.394 -20.636 21.118 hybrid contribution 0.266 -1.815 -0.035 1.835 sum -0.628 -6.210 -20.671 21.593 Atomic orbital electron populations 1.21655 0.95757 0.99720 1.02428 1.22506 0.97278 1.00998 0.99039 1.19736 0.96109 0.88190 0.88278 0.94672 1.20856 1.31548 1.12849 0.87895 0.89974 1.24894 0.95511 0.96613 0.96113 1.69875 1.44923 1.40158 0.98688 0.86974 0.81096 0.83824 0.76995 1.20668 1.19543 1.22358 1.60792 1.03805 1.62758 1.02377 1.20955 0.97704 0.97210 0.87554 1.19948 0.99815 0.93103 0.97755 1.21354 0.91440 1.00129 0.91315 1.21231 1.07303 0.93732 1.01022 1.18638 0.90703 0.91228 0.85706 1.86404 1.64505 1.40635 1.28013 1.23268 0.93973 0.96099 0.94108 1.20527 1.11654 0.84022 1.00274 1.43323 0.98668 1.02453 0.99990 1.94554 1.35622 1.61073 1.47386 1.94550 1.56059 1.72802 1.13256 1.20914 0.94518 0.94571 0.91712 0.94997 0.89921 0.94226 0.94935 0.93095 0.92632 0.84825 0.89905 0.94513 0.84004 0.83360 0.87279 0.92129 0.91979 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.40 37.16 0.35 -2.18 16 2 C -0.16 -3.11 5.23 -26.73 -0.14 -3.25 16 3 C 0.19 4.00 1.92 -68.86 -0.13 3.86 16 4 H 0.04 0.80 6.89 -51.93 -0.36 0.44 16 5 C -0.49 -13.05 7.86 -34.44 -0.27 -13.32 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 9 Si 0.88 20.98 24.33 -169.99 -4.14 16.85 16 10 H -0.28 -6.50 6.91 56.52 0.39 -6.11 16 11 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 12 H -0.30 -7.19 7.11 56.52 0.40 -6.78 16 13 N -0.67 -12.09 6.25 -109.22 -0.68 -12.77 16 14 C 0.10 1.35 5.60 -4.98 -0.03 1.32 16 15 C -0.10 -1.29 5.36 -104.60 -0.56 -1.85 16 16 C -0.02 -0.23 9.69 -39.60 -0.38 -0.61 16 17 C -0.21 -1.94 9.04 -39.43 -0.36 -2.29 16 18 C 0.19 2.20 6.67 -39.22 -0.26 1.94 16 19 O -0.28 -3.18 8.51 -41.55 -0.35 -3.54 16 20 C 0.02 0.12 9.81 101.05 0.99 1.11 16 21 C -0.08 -1.13 6.87 -79.81 -0.55 -1.67 16 22 N 0.04 0.62 4.45 34.03 0.15 0.77 16 23 O -0.18 -3.01 18.45 -29.46 -0.54 -3.55 16 24 O -0.15 -2.46 17.24 -36.49 -0.63 -3.09 16 25 C 0.00 0.03 9.20 -39.60 -0.36 -0.33 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.78 6.89 -51.92 -0.36 1.43 16 28 H 0.04 0.63 6.61 -51.93 -0.34 0.28 16 29 H 0.03 0.54 7.40 -51.93 -0.38 0.16 16 30 H 0.05 1.08 3.39 -51.93 -0.18 0.91 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.33 5.68 6.54 -39.29 -0.26 5.43 16 33 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.04 0.48 7.32 -51.93 -0.38 0.10 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 0.86 6.30 -52.49 -0.33 0.53 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 39 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 40 H 0.16 2.21 7.61 -52.49 -0.40 1.82 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -31.51 328.88 -7.34 -38.85 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.07 Total: 2.82 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.80 Total: -15.44 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.24 Total: -37.86 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.53 Total: -10.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.51 -7.34 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184084638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.253 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds