Wall clock time and date at job start Tue Mar 31 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00183 * 60.00002 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47261 * 270.00294 * 9 7 5 11 11 H 1.48503 * 109.47007 * 30.00144 * 9 7 5 12 12 H 1.48494 * 109.47259 * 149.99760 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38289 * 119.94686 * 269.72506 * 15 14 13 17 17 C 1.38126 * 120.05586 * 179.72631 * 16 15 14 18 18 C 1.38751 * 119.94287 * 0.55111 * 17 16 15 19 19 O 1.35901 * 120.05450 * 179.70795 * 18 17 16 20 20 C 1.42900 * 116.99901 * 0.02562 * 19 18 17 21 21 C 1.38713 * 119.89088 * 359.72376 * 18 17 16 22 22 N 1.48002 * 120.03055 * 180.02562 * 21 18 17 23 23 O 1.21799 * 120.00187 * 179.97438 * 22 21 18 24 24 O 1.21803 * 119.99471 * 359.97331 * 22 21 18 25 25 C 1.38169 * 119.94230 * 0.02562 * 21 18 17 26 26 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 27 27 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 28 28 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 29 29 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 30 30 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 31 31 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 33 33 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 34 34 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 35 35 H 1.08002 * 119.96779 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.02599 * 180.25541 * 17 16 15 37 37 H 1.09002 * 109.46749 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46977 * 299.99832 * 20 19 18 39 39 H 1.08998 * 109.47221 * 60.00251 * 20 19 18 40 40 H 1.07994 * 119.97222 * 180.02562 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4565 8 7 1.1741 2.3936 3.4788 9 14 2.7456 0.2329 2.7457 10 1 1.8844 -0.9768 2.7596 11 1 3.7486 0.1140 1.6571 12 1 3.4437 0.3585 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 1.3493 1.7215 -4.4683 17 6 0.8960 2.2839 -5.6456 18 6 1.2351 3.5911 -5.9643 19 8 0.7952 4.1447 -7.1248 20 6 -0.0133 3.3235 -7.9699 21 6 2.0241 4.3317 -5.0965 22 7 2.3872 5.7264 -5.4331 23 8 3.0797 6.3765 -4.6706 24 8 1.9935 6.2242 -6.4728 25 6 2.4708 3.7662 -3.9176 26 1 -0.3634 -1.0233 0.0943 27 1 -0.3633 0.5934 0.8391 28 1 -0.3633 0.4301 -0.9333 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3431 2.0856 4.3830 32 1 0.7157 1.8142 -1.5318 33 1 3.5769 2.2925 -2.0419 34 1 2.7408 0.7747 -2.4491 35 1 1.0897 0.7025 -4.2220 36 1 0.2820 1.7051 -6.3198 37 1 -0.2955 3.8854 -8.8602 38 1 0.5506 2.4379 -8.2631 39 1 -0.9111 3.0207 -7.4311 40 1 3.0847 4.3425 -3.2415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184084638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:35 Heat of formation + Delta-G solvation = -28.727318 kcal Electronic energy + Delta-G solvation = -23552.443010 eV Core-core repulsion = 19949.470856 eV Total energy + Delta-G solvation = -3602.972155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.22687 -41.36766 -39.44930 -38.18327 -37.51571 -34.75691 -33.55211 -32.94756 -31.19921 -28.98548 -28.37414 -27.48534 -25.74570 -24.96739 -23.64603 -22.55873 -21.36014 -20.22201 -19.72794 -18.88192 -18.60339 -18.42742 -17.50346 -17.06032 -16.85125 -16.60390 -15.72380 -15.58856 -15.35415 -14.97353 -14.87106 -14.41272 -14.25866 -13.78872 -13.71135 -13.40594 -12.99584 -12.77983 -12.67482 -12.63621 -12.46971 -12.29453 -12.24287 -12.15091 -12.10866 -11.98629 -11.64293 -11.24440 -11.09603 -10.68652 -10.65627 -9.63180 -8.98423 -8.21772 -6.22002 -1.16196 -0.05572 0.30842 0.44317 1.31539 1.37246 1.46336 1.92233 2.20973 2.35616 3.13505 3.26139 3.45344 3.60365 3.74271 3.89337 3.93089 4.22915 4.29881 4.34862 4.35274 4.37800 4.47738 4.53984 4.65735 4.71890 4.76392 4.87406 4.94851 5.07034 5.12574 5.20040 5.29803 5.32903 5.34948 5.62802 5.76189 5.99030 6.03831 6.56365 6.70301 6.77353 6.84733 7.41426 8.95780 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003628 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.823063 B = 7716.257642 C = 8430.468921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 C 0.190 3.810 4 H 0.029 0.971 5 C -0.487 4.487 6 H 0.031 0.969 7 C 0.010 3.990 8 N -0.954 5.954 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.247 1.247 12 H -0.306 1.306 13 N -0.683 5.683 14 C 0.099 3.901 15 C -0.112 4.112 16 C -0.004 4.004 17 C -0.196 4.196 18 C 0.189 3.811 19 O -0.309 6.309 20 C 0.007 3.993 21 C -0.106 4.106 22 N 0.040 4.960 23 O -0.221 6.221 24 O -0.154 6.154 25 C -0.012 4.012 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.262 0.738 32 H 0.340 0.660 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.180 0.820 36 H 0.193 0.807 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -8.582 -24.121 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.195 4.195 3 C 0.081 3.919 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.050 0.950 7 C -0.186 4.186 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.171 1.171 12 H -0.235 1.235 13 N -0.316 5.316 14 C -0.029 4.029 15 C -0.114 4.114 16 C -0.022 4.022 17 C -0.215 4.215 18 C 0.140 3.860 19 O -0.219 6.219 20 C -0.086 4.086 21 C -0.192 4.192 22 N 0.551 4.449 23 O -0.422 6.422 24 O -0.374 6.374 25 C -0.032 4.032 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.197 0.803 36 H 0.210 0.790 37 H 0.140 0.860 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.420 -8.388 -23.658 25.141 hybrid contribution 0.295 -0.534 0.708 0.934 sum -1.126 -8.922 -22.950 24.649 Atomic orbital electron populations 1.21584 0.95102 1.00613 1.01892 1.22413 0.97880 0.98957 1.00259 1.19469 0.95127 0.89387 0.87937 0.95349 1.21132 1.29948 1.11361 0.90149 0.95018 1.25723 0.97091 0.99958 0.95826 1.70056 1.47578 1.42687 0.99195 0.85926 0.79792 0.80200 0.76842 1.19162 1.17059 1.23486 1.60534 1.05147 1.63249 1.02637 1.20916 0.96149 0.98891 0.86981 1.19802 1.01204 0.92650 0.97744 1.21756 0.88983 1.01224 0.90283 1.21686 1.06348 0.92343 1.01131 1.18895 0.89672 0.91895 0.85580 1.86392 1.64938 1.42592 1.28027 1.23684 0.94266 0.96743 0.93954 1.20711 1.13998 0.82714 1.01763 1.43689 0.98143 1.03508 0.99557 1.94539 1.37386 1.62381 1.47922 1.94502 1.55869 1.73606 1.13458 1.20837 0.95236 0.95394 0.91706 0.92553 0.94349 0.91729 0.90683 0.94618 0.92895 0.83995 0.91024 0.91690 0.80272 0.79002 0.85950 0.89833 0.90224 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.40 71.98 0.68 -3.85 16 2 C -0.16 -5.51 5.23 30.60 0.16 -5.35 16 3 C 0.19 7.92 1.92 44.17 0.08 8.01 16 4 H 0.03 1.23 6.89 -2.39 -0.02 1.22 16 5 C -0.49 -26.50 7.86 25.60 0.20 -26.30 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.58 5.45 84.65 0.46 1.04 16 8 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 9 Si 0.94 43.22 24.33 68.60 1.67 44.89 16 10 H -0.27 -11.46 6.91 99.48 0.69 -10.77 16 11 H -0.25 -10.24 6.53 99.48 0.65 -9.59 16 12 H -0.31 -14.42 7.11 99.48 0.71 -13.72 16 13 N -0.68 -23.71 6.25 -499.45 -3.12 -26.84 16 14 C 0.10 2.55 5.60 85.56 0.48 3.03 16 15 C -0.11 -2.48 5.36 -19.85 -0.11 -2.58 16 16 C 0.00 -0.06 9.69 22.26 0.22 0.16 16 17 C -0.20 -2.55 9.04 22.37 0.20 -2.35 16 18 C 0.19 3.98 6.67 22.51 0.15 4.13 16 19 O -0.31 -6.14 8.51 -71.28 -0.61 -6.75 16 20 C 0.01 0.05 9.81 113.37 1.11 1.17 16 21 C -0.11 -2.97 6.87 36.48 0.25 -2.72 16 22 N 0.04 1.36 4.45 -46.24 -0.21 1.15 16 23 O -0.22 -8.15 18.45 18.89 0.35 -7.80 16 24 O -0.15 -5.25 17.24 25.60 0.44 -4.81 16 25 C -0.01 -0.32 9.20 22.26 0.20 -0.12 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.62 6.89 -2.38 -0.02 1.61 16 28 H 0.06 1.81 6.61 -2.39 -0.02 1.79 16 29 H 0.07 2.05 7.40 -2.39 -0.02 2.03 16 30 H 0.04 1.38 3.39 -2.39 -0.01 1.37 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.34 10.72 6.54 -89.69 -0.59 10.13 16 33 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.07 1.34 7.32 -2.38 -0.02 1.32 16 35 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.19 0.83 6.30 -2.91 -0.02 0.81 16 37 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.29 7.66 -2.39 -0.02 0.27 16 39 H 0.08 0.36 7.66 -2.39 -0.02 0.35 16 40 H 0.14 4.27 7.61 -2.91 -0.02 4.24 16 Total: -1.00 -74.94 328.88 3.33 -71.62 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.41 Total: 13.08 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 4.09 Total: -25.73 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.03 Total: -84.50 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.36 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.67 Total: 44.89 kcal Total: -74.94 3.33 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184084638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.888 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds