Wall clock time and date at job start Tue Mar 31 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.50697 * 109.47239 * 185.00390 * 3 2 1 7 7 C 1.41265 * 126.70055 * 274.99881 * 6 3 2 8 8 C 1.36831 * 103.84509 * 180.02562 * 7 6 3 9 9 C 1.47507 * 126.94600 * 180.02562 * 8 7 6 10 10 O 1.21589 * 119.99638 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00316 * 179.97438 * 9 8 7 12 12 C 1.47066 * 136.05531 * 359.62342 * 11 9 8 13 13 C 1.53235 * 88.08450 * 207.20544 * 12 11 9 14 14 O 1.42907 * 114.19433 * 87.72684 * 13 12 11 15 15 C 1.50692 * 114.32808 * 220.47158 * 13 12 11 16 16 H 1.07997 * 120.00033 * 93.76150 * 15 13 12 17 17 C 1.37874 * 120.00224 * 273.75537 * 15 13 12 18 18 N 1.31515 * 119.99751 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00360 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47270 * 90.00053 * 19 17 15 21 21 H 1.48509 * 109.47131 * 210.00382 * 19 17 15 22 22 H 1.48502 * 109.47125 * 329.99944 * 19 17 15 23 23 C 1.47068 * 136.05719 * 179.97438 * 11 9 8 24 24 O 1.34643 * 106.11111 * 359.97438 * 8 7 6 25 25 N 1.20892 * 111.46983 * 359.71161 * 24 8 7 26 26 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 27 27 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 29 29 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 30 30 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 33 33 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 34 34 H 1.07998 * 128.07775 * 0.02562 * 7 6 3 35 35 H 1.08997 * 113.46692 * 321.94364 * 12 11 9 36 36 H 1.08998 * 113.46496 * 92.37938 * 12 11 9 37 37 H 0.96696 * 113.99953 * 86.30766 * 14 13 12 38 38 H 0.97005 * 120.00010 * 179.97438 * 18 17 15 39 39 H 1.08996 * 113.46673 * 267.62394 * 23 11 9 40 40 H 1.09000 * 113.46469 * 38.00641 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 6 4.4759 1.3139 0.9278 8 6 5.6891 1.3777 0.2981 9 6 7.0204 1.2929 0.9277 10 8 7.1156 1.1514 2.1315 11 7 8.1311 1.3722 0.1685 12 6 8.4259 1.5303 -1.2636 13 6 9.7468 0.7925 -1.0206 14 8 9.6509 -0.6296 -1.1241 15 6 10.9244 1.3660 -1.7657 16 1 11.5647 2.0920 -1.2869 17 6 11.1844 0.9638 -3.0586 18 7 10.4044 0.0800 -3.6417 19 14 12.6446 1.6742 -3.9820 20 1 13.8411 0.8281 -3.7421 21 1 12.3434 1.7050 -5.4359 22 1 12.9099 3.0543 -3.5021 23 6 9.5818 1.3325 0.4070 24 8 5.4221 1.5325 -1.0125 25 7 4.2317 1.5604 -1.2213 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9982 3.1544 1.3071 32 1 2.0699 1.5876 2.1491 33 1 0.5489 2.1253 1.3969 34 1 4.2786 1.1923 1.9826 35 1 7.7387 0.9855 -1.9109 36 1 8.5582 2.5687 -1.5674 37 1 9.7553 -0.9663 -2.0245 38 1 10.5871 -0.2027 -4.5515 39 1 10.0249 2.3177 0.5524 40 1 9.8755 0.6204 1.1782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186800861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:10 Heat of formation + Delta-G solvation = 4.048137 kcal Electronic energy + Delta-G solvation = -23670.298356 eV Core-core repulsion = 20068.747452 eV Total energy + Delta-G solvation = -3601.550904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.83200 -39.67040 -37.59682 -37.24610 -34.12547 -33.16964 -32.22346 -31.84658 -29.68663 -28.86637 -25.74873 -25.46364 -25.19096 -23.20253 -22.85630 -21.01136 -19.91424 -18.71306 -17.74107 -17.50450 -16.98816 -16.04074 -15.79149 -15.21305 -15.15759 -14.73196 -14.50513 -14.21759 -13.92054 -13.68444 -13.20403 -12.94958 -12.79658 -12.57416 -12.39480 -12.07727 -12.04713 -11.59675 -11.57251 -11.40613 -11.18520 -11.09440 -11.05208 -10.85936 -10.50822 -10.30604 -10.05895 -10.00625 -9.55065 -9.38463 -8.81632 -8.49977 -8.02122 -6.42961 -4.53750 1.03867 2.12917 2.85681 3.14251 3.22431 3.24545 3.37321 3.45540 3.94192 4.16212 4.41719 4.66703 4.75709 4.83701 4.91298 5.04231 5.12808 5.21484 5.28307 5.37522 5.46854 5.51066 5.63496 5.70563 5.73475 5.79030 5.85694 5.99562 6.05126 6.06556 6.08598 6.32015 6.44351 6.48537 6.67862 7.04271 7.60159 7.75174 8.13461 8.18181 8.46831 8.50555 9.17653 9.44704 10.64055 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.003466 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.186038 B = 8077.536631 C = 8599.878985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.011 4.011 4 H 0.088 0.912 5 C -0.147 4.147 6 C 0.014 3.986 7 C -0.164 4.164 8 C -0.056 4.056 9 C 0.617 3.383 10 O -0.538 6.538 11 N -0.619 5.619 12 C 0.070 3.930 13 C 0.241 3.759 14 O -0.571 6.571 15 C -0.535 4.535 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.910 3.090 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.110 3.890 24 O 0.124 5.876 25 N -0.351 5.351 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.179 0.821 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.092 0.908 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.463 2.648 4.821 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.030 4.030 4 H 0.107 0.893 5 C -0.204 4.204 6 C -0.144 4.144 7 C -0.187 4.187 8 C -0.122 4.122 9 C 0.404 3.596 10 O -0.418 6.418 11 N -0.350 5.350 12 C -0.053 4.053 13 C 0.199 3.801 14 O -0.385 6.385 15 C -0.573 4.573 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.737 3.263 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.011 4.011 24 O 0.051 5.949 25 N -0.051 5.051 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.196 0.804 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.027 2.646 4.731 15.975 hybrid contribution 0.696 0.253 -0.445 0.863 sum -14.332 2.899 4.286 15.237 Atomic orbital electron populations 1.21813 0.95112 1.01928 1.02028 1.21575 0.96152 0.94918 1.02902 1.19565 0.85538 0.97790 1.00089 0.89336 1.21891 1.01784 1.00685 0.96080 1.23543 0.98622 1.03724 0.88544 1.22690 0.89412 1.04698 1.01894 1.24380 0.97243 1.06522 0.84098 1.15985 0.80140 0.78549 0.84965 1.90806 1.85179 1.53013 1.12778 1.49680 1.06069 1.67104 1.12147 1.24381 1.00003 1.01988 0.78894 1.19482 0.90633 0.80561 0.89408 1.86040 1.95090 1.20110 1.37231 1.21382 1.12042 1.25479 0.98378 0.90768 1.25088 0.96577 0.94250 0.97125 1.69261 1.37958 1.31415 1.14968 0.86288 0.81781 0.79591 0.78619 1.20224 1.20885 1.19504 1.23471 0.76213 1.00882 1.00570 1.85080 1.18980 1.65897 1.24893 1.73738 0.89577 1.17549 1.24208 0.92597 0.92464 0.92247 0.91602 0.91325 0.92214 0.91887 0.91338 0.80390 0.90916 0.89420 0.74783 0.91467 0.88962 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -1.10 5.38 -26.73 -0.14 -1.25 16 3 C -0.01 -0.11 2.85 -91.77 -0.26 -0.37 16 4 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.22 8.56 37.16 0.32 -0.90 16 6 C 0.01 0.19 6.20 -82.17 -0.51 -0.32 16 7 C -0.16 -2.47 10.13 -38.94 -0.39 -2.86 16 8 C -0.06 -1.01 7.25 -36.31 -0.26 -1.28 16 9 C 0.62 12.67 8.07 -12.48 -0.10 12.57 16 10 O -0.54 -11.94 17.69 5.29 0.09 -11.84 16 11 N -0.62 -13.00 3.69 -186.60 -0.69 -13.69 16 12 C 0.07 1.50 7.27 -8.64 -0.06 1.44 16 13 C 0.24 5.66 1.57 -91.38 -0.14 5.51 16 14 O -0.57 -14.53 13.54 -35.23 -0.48 -15.01 16 15 C -0.53 -13.02 8.69 -34.45 -0.30 -13.31 16 16 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 18 N -0.90 -22.43 11.01 55.43 0.61 -21.82 16 19 Si 0.91 19.09 29.54 -169.99 -5.02 14.06 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C 0.11 2.31 8.04 -8.49 -0.07 2.24 16 24 O 0.12 2.27 9.99 15.55 0.16 2.42 16 25 N -0.35 -5.93 12.04 33.52 0.40 -5.53 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.51 7.48 -51.93 -0.39 0.12 16 33 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 34 H 0.18 2.28 7.65 -52.49 -0.40 1.88 16 35 H 0.07 1.61 7.59 -51.93 -0.39 1.22 16 36 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 37 H 0.40 10.20 6.32 45.56 0.29 10.49 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -27.51 339.39 -6.40 -33.91 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.92 Total: 9.97 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.67 Total: 2.40 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.33 Total: -41.04 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.23 Total: -24.43 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.51 -6.40 -33.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186800861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.958 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds