Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.50697 * 109.47239 * 185.00390 * 3 2 1 7 7 C 1.41265 * 126.70055 * 274.99881 * 6 3 2 8 8 C 1.36831 * 103.84509 * 180.02562 * 7 6 3 9 9 C 1.47507 * 126.94600 * 180.02562 * 8 7 6 10 10 O 1.21589 * 119.99638 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00316 * 179.97438 * 9 8 7 12 12 C 1.47066 * 136.05531 * 359.62342 * 11 9 8 13 13 C 1.53235 * 88.08450 * 207.20544 * 12 11 9 14 14 O 1.42907 * 114.19433 * 87.72684 * 13 12 11 15 15 C 1.50692 * 114.32808 * 220.47158 * 13 12 11 16 16 H 1.07997 * 120.00033 * 93.76150 * 15 13 12 17 17 C 1.37874 * 120.00224 * 273.75537 * 15 13 12 18 18 N 1.31515 * 119.99751 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00360 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47270 * 90.00053 * 19 17 15 21 21 H 1.48509 * 109.47131 * 210.00382 * 19 17 15 22 22 H 1.48502 * 109.47125 * 329.99944 * 19 17 15 23 23 C 1.47068 * 136.05719 * 179.97438 * 11 9 8 24 24 O 1.34643 * 106.11111 * 359.97438 * 8 7 6 25 25 N 1.20892 * 111.46983 * 359.71161 * 24 8 7 26 26 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 27 27 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 29 29 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 30 30 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 33 33 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 34 34 H 1.07998 * 128.07775 * 0.02562 * 7 6 3 35 35 H 1.08997 * 113.46692 * 321.94364 * 12 11 9 36 36 H 1.08998 * 113.46496 * 92.37938 * 12 11 9 37 37 H 0.96696 * 113.99953 * 86.30766 * 14 13 12 38 38 H 0.97005 * 120.00010 * 179.97438 * 18 17 15 39 39 H 1.08996 * 113.46673 * 267.62394 * 23 11 9 40 40 H 1.09000 * 113.46469 * 38.00641 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 6 4.4759 1.3139 0.9278 8 6 5.6891 1.3777 0.2981 9 6 7.0204 1.2929 0.9277 10 8 7.1156 1.1514 2.1315 11 7 8.1311 1.3722 0.1685 12 6 8.4259 1.5303 -1.2636 13 6 9.7468 0.7925 -1.0206 14 8 9.6509 -0.6296 -1.1241 15 6 10.9244 1.3660 -1.7657 16 1 11.5647 2.0920 -1.2869 17 6 11.1844 0.9638 -3.0586 18 7 10.4044 0.0800 -3.6417 19 14 12.6446 1.6742 -3.9820 20 1 13.8411 0.8281 -3.7421 21 1 12.3434 1.7050 -5.4359 22 1 12.9099 3.0543 -3.5021 23 6 9.5818 1.3325 0.4070 24 8 5.4221 1.5325 -1.0125 25 7 4.2317 1.5604 -1.2213 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9982 3.1544 1.3071 32 1 2.0699 1.5876 2.1491 33 1 0.5489 2.1253 1.3969 34 1 4.2786 1.1923 1.9826 35 1 7.7387 0.9855 -1.9109 36 1 8.5582 2.5687 -1.5674 37 1 9.7553 -0.9663 -2.0245 38 1 10.5871 -0.2027 -4.5515 39 1 10.0249 2.3177 0.5524 40 1 9.8755 0.6204 1.1782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186800861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = -13.716051 kcal Electronic energy + Delta-G solvation = -23671.068669 eV Core-core repulsion = 20068.747452 eV Total energy + Delta-G solvation = -3602.321217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.10771 -41.37433 -39.29918 -38.13632 -35.97844 -34.26536 -34.12793 -33.20837 -30.57317 -30.39898 -27.50710 -26.93631 -26.27187 -24.61398 -24.00208 -22.17106 -21.39100 -20.10606 -19.46192 -18.83191 -18.59405 -17.58962 -17.26182 -16.93563 -16.40636 -15.98333 -15.93900 -15.57241 -15.08680 -14.82292 -14.62013 -14.55401 -14.23979 -13.79787 -13.67108 -13.41663 -13.02944 -12.93215 -12.80758 -12.77994 -12.52331 -12.21444 -12.20983 -12.17921 -11.97905 -11.73582 -11.59615 -11.16482 -11.11074 -10.90103 -10.67872 -10.32204 -9.75143 -8.27667 -6.44909 -0.36332 0.94088 1.38834 1.48854 1.52470 1.61319 1.81146 1.95706 2.41317 2.88852 2.93375 3.16922 3.60750 3.73302 3.84408 3.95965 4.01697 4.08678 4.11986 4.34555 4.43338 4.54566 4.59543 4.59756 4.71049 4.73399 4.81921 4.83733 4.90731 5.01244 5.07378 5.11720 5.17168 5.20112 5.37141 5.47805 5.73002 5.88321 6.50439 6.62054 6.69204 6.98999 7.28827 7.46178 8.78924 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.003466 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.186038 B = 8077.536631 C = 8599.878985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.011 4.011 4 H 0.092 0.908 5 C -0.144 4.144 6 C 0.029 3.971 7 C -0.143 4.143 8 C -0.084 4.084 9 C 0.618 3.382 10 O -0.558 6.558 11 N -0.623 5.623 12 C 0.084 3.916 13 C 0.220 3.780 14 O -0.586 6.586 15 C -0.549 4.549 16 H 0.081 0.919 17 C 0.030 3.970 18 N -0.919 5.919 19 Si 0.973 3.027 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.263 1.263 23 C 0.114 3.886 24 O 0.098 5.902 25 N -0.369 5.369 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.203 0.797 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.390 0.610 38 H 0.276 0.724 39 H 0.117 0.883 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 3.558 5.488 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.111 0.889 5 C -0.202 4.202 6 C -0.130 4.130 7 C -0.165 4.165 8 C -0.149 4.149 9 C 0.405 3.595 10 O -0.440 6.440 11 N -0.354 5.354 12 C -0.039 4.039 13 C 0.178 3.822 14 O -0.399 6.399 15 C -0.587 4.587 16 H 0.099 0.901 17 C -0.170 4.170 18 N -0.559 5.559 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.007 4.007 24 O 0.030 5.970 25 N -0.073 5.073 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.220 0.780 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.360 3.563 5.412 17.597 hybrid contribution 1.014 -0.065 -0.623 1.192 sum -15.346 3.498 4.789 16.453 Atomic orbital electron populations 1.21792 0.93092 1.02620 1.02932 1.21571 0.97866 0.93876 1.02111 1.19820 0.82694 0.98861 1.01690 0.88936 1.21916 1.03433 1.00175 0.94665 1.24213 1.00330 1.01100 0.87328 1.23080 0.88276 1.02038 1.03062 1.24131 0.96920 1.09160 0.84717 1.16219 0.80738 0.77714 0.84788 1.90779 1.85744 1.53943 1.13493 1.49672 1.06364 1.67514 1.11860 1.24161 0.98592 1.02079 0.79054 1.19772 0.91489 0.79694 0.91209 1.86023 1.95266 1.21702 1.36909 1.21647 1.12534 1.25766 0.98790 0.90079 1.25815 0.98787 0.94546 0.97885 1.69338 1.39177 1.32220 1.15204 0.85319 0.78632 0.79080 0.77196 1.20322 1.20949 1.18717 1.23488 0.76549 1.01823 0.98869 1.85063 1.19758 1.67220 1.24993 1.73742 0.89347 1.18727 1.25478 0.92336 0.91951 0.90687 0.93468 0.91127 0.92497 0.91378 0.88940 0.77983 0.92299 0.88286 0.75405 0.91380 0.86565 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.02 16 2 C -0.12 -1.95 5.38 30.60 0.16 -1.78 16 3 C -0.01 -0.21 2.85 -11.54 -0.03 -0.24 16 4 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 5 C -0.14 -1.93 8.56 71.98 0.62 -1.31 16 6 C 0.03 0.78 6.20 43.55 0.27 1.05 16 7 C -0.14 -4.08 10.13 22.68 0.23 -3.85 16 8 C -0.08 -3.01 7.25 24.39 0.18 -2.84 16 9 C 0.62 25.41 8.07 86.69 0.70 26.11 16 10 O -0.56 -24.62 17.69 -4.00 -0.07 -24.69 16 11 N -0.62 -26.34 3.69 -863.03 -3.19 -29.52 16 12 C 0.08 3.65 7.27 83.09 0.60 4.25 16 13 C 0.22 10.42 1.57 -11.29 -0.02 10.40 16 14 O -0.59 -30.55 13.54 -148.98 -2.02 -32.57 16 15 C -0.55 -26.65 8.69 25.60 0.22 -26.43 16 16 H 0.08 3.73 7.81 -2.91 -0.02 3.70 16 17 C 0.03 1.46 5.39 84.65 0.46 1.92 16 18 N -0.92 -46.49 11.01 21.45 0.24 -46.26 16 19 Si 0.97 38.80 29.54 68.60 2.03 40.83 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 C 0.11 4.77 8.04 83.19 0.67 5.44 16 24 O 0.10 3.63 9.99 65.81 0.66 4.29 16 25 N -0.37 -12.41 12.04 -48.86 -0.59 -13.00 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.66 6.56 -2.39 -0.02 0.64 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.86 7.48 -2.39 -0.02 0.84 16 33 H 0.09 0.83 6.57 -2.38 -0.02 0.81 16 34 H 0.20 4.68 7.65 -2.91 -0.02 4.66 16 35 H 0.06 2.70 7.59 -2.39 -0.02 2.68 16 36 H 0.10 4.03 8.10 -2.39 -0.02 4.01 16 37 H 0.39 20.78 6.32 -74.06 -0.47 20.31 16 38 H 0.28 13.28 8.31 -92.70 -0.77 12.51 16 39 H 0.12 4.24 8.10 -2.39 -0.02 4.22 16 40 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -58.87 339.39 2.41 -56.46 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.59 Total: 32.78 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 4.75 Total: 11.69 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -3.54 Total: -88.78 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.43 Total: -52.97 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -58.87 2.41 -56.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186800861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.747 kcal (2) G-P(sol) polarization free energy of solvation -58.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds