Wall clock time and date at job start Tue Mar 31 2020 07:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47095 * 2 1 4 4 C 1.50703 * 109.46919 * 120.00141 * 2 1 3 5 5 H 1.07993 * 120.00081 * 120.00146 * 4 2 1 6 6 C 1.37881 * 119.99759 * 299.99544 * 4 2 1 7 7 N 1.31513 * 120.00182 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99753 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47255 * 90.00190 * 8 6 4 10 10 H 1.48501 * 109.47202 * 210.00268 * 8 6 4 11 11 H 1.48500 * 109.47120 * 329.99956 * 8 6 4 12 12 N 1.46497 * 109.46820 * 239.99762 * 2 1 3 13 13 C 1.34779 * 120.00024 * 85.00215 * 12 2 1 14 14 O 1.21285 * 119.99795 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00159 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47471 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47535 * 179.97438 * 16 15 13 18 18 N 1.46494 * 109.47001 * 180.02562 * 17 16 15 19 19 C 1.34784 * 119.99635 * 180.02562 * 18 17 16 20 20 O 1.21690 * 119.99870 * 0.02562 * 19 18 17 21 21 C 1.46660 * 119.99858 * 180.02562 * 19 18 17 22 22 C 1.36539 * 125.98487 * 179.71512 * 21 19 18 23 23 C 1.40368 * 106.70605 * 179.90747 * 22 21 19 24 24 C 1.35128 * 107.11508 * 0.35329 * 23 22 21 25 25 O 1.33929 * 108.76888 * 359.78219 * 24 23 22 26 26 H 1.08998 * 109.47151 * 300.00289 * 1 2 3 27 27 H 1.09002 * 109.47496 * 60.00001 * 1 2 3 28 28 H 1.09005 * 109.47521 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00126 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00300 * 264.99623 * 12 2 1 31 31 H 1.09005 * 109.46912 * 60.00075 * 15 13 12 32 32 H 1.09004 * 109.47536 * 300.00283 * 15 13 12 33 33 H 1.09005 * 109.46889 * 60.00186 * 16 15 13 34 34 H 1.08996 * 109.47223 * 300.00965 * 16 15 13 35 35 H 1.09005 * 109.46767 * 60.00250 * 17 16 15 36 36 H 1.09002 * 109.47113 * 300.00590 * 17 16 15 37 37 H 0.96995 * 120.00292 * 0.27801 * 18 17 16 38 38 H 1.08001 * 126.65026 * 0.03728 * 22 21 19 39 39 H 1.07996 * 126.44593 * 180.14760 * 23 22 21 40 40 H 1.08001 * 125.62072 * 179.77455 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.6303 -0.5441 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0182 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6498 -0.7286 -3.5875 16 6 2.7005 0.2542 -4.7589 17 6 3.2116 -0.4668 -6.0079 18 7 3.2608 0.4745 -7.1293 19 6 3.6826 0.0588 -8.3400 20 8 4.0222 -1.0985 -8.5016 21 6 3.7324 1.0013 -9.4626 22 6 4.1424 0.7148 -10.7331 23 6 4.0248 1.9021 -11.4725 24 6 3.5615 2.8513 -10.6295 25 8 3.3866 2.3047 -9.4194 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7088 1.1614 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 1.9775 -1.5509 -3.8325 32 1 3.6491 -1.1205 -3.3979 33 1 3.3726 1.0768 -4.5141 34 1 1.7011 0.6458 -4.9482 35 1 2.5399 -1.2896 -6.2528 36 1 4.2112 -0.8580 -5.8181 37 1 2.9933 1.3978 -6.9996 38 1 4.4881 -0.2408 -11.0989 39 1 4.2631 2.0334 -12.5176 40 1 3.3648 3.8811 -10.8888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194743330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:26 Heat of formation + Delta-G solvation = -74.179413 kcal Electronic energy + Delta-G solvation = -22106.773116 eV Core-core repulsion = 18501.830011 eV Total energy + Delta-G solvation = -3604.943105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.03624 -39.73681 -38.92549 -35.92722 -34.78912 -33.50330 -32.76171 -32.31807 -30.38142 -29.06906 -26.79845 -25.26037 -23.63032 -22.26765 -21.95935 -20.96524 -20.43624 -19.37002 -18.77115 -17.22816 -16.74827 -16.63834 -16.13519 -15.95064 -15.55128 -15.17099 -14.82084 -14.45779 -14.07587 -13.68796 -13.46289 -13.38178 -13.06862 -12.98377 -12.48417 -12.26680 -12.15526 -11.65026 -11.46945 -11.07508 -10.99733 -10.88964 -10.71820 -10.59095 -10.45628 -10.31389 -10.24490 -9.46563 -9.07367 -9.03050 -9.01849 -8.55673 -7.91410 -6.13297 -4.22618 0.70584 1.97422 2.31565 2.88210 2.91584 3.23841 3.30489 3.32246 3.39937 4.07904 4.31117 4.36756 4.51069 4.62773 4.92206 4.95734 5.05023 5.18983 5.23574 5.37738 5.48177 5.48537 5.51734 5.61338 5.79960 5.91767 6.04589 6.08990 6.23623 6.44212 6.81566 6.95642 7.14501 7.16423 7.45772 7.55497 7.68817 7.77609 7.90688 8.14391 8.66684 8.77323 9.12988 9.45148 10.92656 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.043756 B = 0.002078 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.761266 B =13472.494044 C =13817.998195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.500 3.500 14 O -0.558 6.558 15 C -0.139 4.139 16 C -0.115 4.115 17 C 0.117 3.883 18 N -0.716 5.716 19 C 0.601 3.399 20 O -0.522 6.522 21 C -0.079 4.079 22 C -0.121 4.121 23 C -0.227 4.227 24 C -0.006 4.006 25 O -0.163 6.163 26 H 0.090 0.910 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.408 0.592 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 0.809 -24.427 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.438 6.438 15 C -0.180 4.180 16 C -0.153 4.153 17 C -0.006 4.006 18 N -0.367 5.367 19 C 0.387 3.613 20 O -0.400 6.400 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.246 4.246 24 C -0.076 4.076 25 O -0.058 6.058 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.647 1.065 -24.078 24.545 hybrid contribution 0.327 -0.440 0.709 0.897 sum 4.973 0.625 -23.368 23.900 Atomic orbital electron populations 1.22073 0.98506 0.99078 1.00867 1.18734 0.91018 0.93977 0.80143 0.93442 1.21226 1.32407 1.13219 0.90358 0.92074 1.24903 0.94814 0.94993 0.99104 1.69902 1.35830 1.22500 1.23876 0.86437 0.78591 0.79831 0.82165 1.20570 1.21078 1.19852 1.46543 1.64993 1.13584 1.10641 1.20401 0.78721 0.87555 0.84874 1.90652 1.51618 1.16226 1.85307 1.21560 1.03276 0.99376 0.93766 1.21497 1.03246 0.98557 0.92018 1.21539 1.02246 0.92031 0.84794 1.45937 1.66344 1.14991 1.09420 1.16544 0.77866 0.85829 0.81035 1.90891 1.49286 1.16728 1.83111 1.22130 1.10803 0.82858 0.97324 1.21999 1.00196 1.00374 0.91613 1.21885 1.07893 0.92963 1.01831 1.24457 1.01512 0.99851 0.81734 1.84082 1.66328 1.22049 1.33381 0.89179 0.96698 0.95496 0.92580 0.77873 0.89147 0.89071 0.90345 0.90375 0.90865 0.90868 0.75688 0.82191 0.82541 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.66 2.56 -69.08 -0.18 6.48 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.71 -14.40 5.07 -54.93 -0.28 -14.68 16 13 C 0.50 9.43 7.79 -10.99 -0.09 9.34 16 14 O -0.56 -12.81 15.64 5.55 0.09 -12.73 16 15 C -0.14 -1.75 5.70 -27.89 -0.16 -1.91 16 16 C -0.11 -1.33 4.62 -26.73 -0.12 -1.46 16 17 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 18 N -0.72 -7.36 5.55 -61.62 -0.34 -7.70 16 19 C 0.60 7.16 7.79 -12.86 -0.10 7.06 16 20 O -0.52 -7.70 16.86 5.20 0.09 -7.62 16 21 C -0.08 -0.82 7.13 -36.80 -0.26 -1.08 16 22 C -0.12 -1.10 10.62 -39.39 -0.42 -1.51 16 23 C -0.23 -1.51 10.87 -39.89 -0.43 -1.94 16 24 C -0.01 -0.03 12.08 29.63 0.36 0.32 16 25 O -0.16 -1.45 10.40 4.99 0.05 -1.40 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.08 0.97 8.10 -51.93 -0.42 0.54 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 3.58 8.23 -40.82 -0.34 3.25 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.21 0.42 8.06 -52.49 -0.42 -0.01 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -33.55 349.52 -6.58 -40.12 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.58 Total: 6.94 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.48 Total: 0.46 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.01 Total: -46.61 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.23 Total: -21.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.55 -6.58 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194743330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.055 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds