Wall clock time and date at job start Tue Mar 31 2020 07:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47095 * 2 1 4 4 C 1.50703 * 109.46919 * 120.00141 * 2 1 3 5 5 H 1.07993 * 120.00081 * 120.00146 * 4 2 1 6 6 C 1.37881 * 119.99759 * 299.99544 * 4 2 1 7 7 N 1.31513 * 120.00182 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99753 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47255 * 90.00190 * 8 6 4 10 10 H 1.48501 * 109.47202 * 210.00268 * 8 6 4 11 11 H 1.48500 * 109.47120 * 329.99956 * 8 6 4 12 12 N 1.46497 * 109.46820 * 239.99762 * 2 1 3 13 13 C 1.34779 * 120.00024 * 85.00215 * 12 2 1 14 14 O 1.21285 * 119.99795 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00159 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47471 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47535 * 179.97438 * 16 15 13 18 18 N 1.46494 * 109.47001 * 180.02562 * 17 16 15 19 19 C 1.34784 * 119.99635 * 180.02562 * 18 17 16 20 20 O 1.21690 * 119.99870 * 0.02562 * 19 18 17 21 21 C 1.46660 * 119.99858 * 180.02562 * 19 18 17 22 22 C 1.36539 * 125.98487 * 179.71512 * 21 19 18 23 23 C 1.40368 * 106.70605 * 179.90747 * 22 21 19 24 24 C 1.35128 * 107.11508 * 0.35329 * 23 22 21 25 25 O 1.33929 * 108.76888 * 359.78219 * 24 23 22 26 26 H 1.08998 * 109.47151 * 300.00289 * 1 2 3 27 27 H 1.09002 * 109.47496 * 60.00001 * 1 2 3 28 28 H 1.09005 * 109.47521 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00126 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00300 * 264.99623 * 12 2 1 31 31 H 1.09005 * 109.46912 * 60.00075 * 15 13 12 32 32 H 1.09004 * 109.47536 * 300.00283 * 15 13 12 33 33 H 1.09005 * 109.46889 * 60.00186 * 16 15 13 34 34 H 1.08996 * 109.47223 * 300.00965 * 16 15 13 35 35 H 1.09005 * 109.46767 * 60.00250 * 17 16 15 36 36 H 1.09002 * 109.47113 * 300.00590 * 17 16 15 37 37 H 0.96995 * 120.00292 * 0.27801 * 18 17 16 38 38 H 1.08001 * 126.65026 * 0.03728 * 22 21 19 39 39 H 1.07996 * 126.44593 * 180.14760 * 23 22 21 40 40 H 1.08001 * 125.62072 * 179.77455 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.6303 -0.5441 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0182 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6498 -0.7286 -3.5875 16 6 2.7005 0.2542 -4.7589 17 6 3.2116 -0.4668 -6.0079 18 7 3.2608 0.4745 -7.1293 19 6 3.6826 0.0588 -8.3400 20 8 4.0222 -1.0985 -8.5016 21 6 3.7324 1.0013 -9.4626 22 6 4.1424 0.7148 -10.7331 23 6 4.0248 1.9021 -11.4725 24 6 3.5615 2.8513 -10.6295 25 8 3.3866 2.3047 -9.4194 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7088 1.1614 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 1.9775 -1.5509 -3.8325 32 1 3.6491 -1.1205 -3.3979 33 1 3.3726 1.0768 -4.5141 34 1 1.7011 0.6458 -4.9482 35 1 2.5399 -1.2896 -6.2528 36 1 4.2112 -0.8580 -5.8181 37 1 2.9933 1.3978 -6.9996 38 1 4.4881 -0.2408 -11.0989 39 1 4.2631 2.0334 -12.5176 40 1 3.3648 3.8811 -10.8888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194743330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:26 Heat of formation + Delta-G solvation = -98.947188 kcal Electronic energy + Delta-G solvation = -22107.847127 eV Core-core repulsion = 18501.830011 eV Total energy + Delta-G solvation = -3606.017117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.64094 -40.73468 -40.40180 -37.05694 -36.48893 -34.32409 -34.13696 -33.69612 -31.27689 -30.66540 -27.88468 -27.31915 -24.55276 -23.27188 -22.68397 -22.35011 -21.37300 -20.96727 -19.50585 -18.89159 -17.54589 -17.45942 -17.34182 -17.10356 -16.87969 -16.75525 -15.97653 -15.83936 -15.24396 -14.92830 -14.61098 -14.34693 -14.11827 -13.93672 -13.76073 -13.58766 -13.30656 -13.25818 -12.87000 -12.84029 -12.67214 -12.47794 -12.25947 -12.12308 -11.86212 -11.53293 -11.10175 -11.05406 -10.70176 -10.54835 -10.32167 -9.70655 -9.64949 -8.17314 -6.34697 0.01331 1.42436 1.45348 1.45540 1.56396 1.65694 1.89259 2.07028 2.15891 2.37988 2.73479 3.13022 3.68188 3.83505 3.95677 4.03174 4.03621 4.11776 4.39263 4.58272 4.61045 4.67597 4.73914 4.79483 4.90470 4.93399 4.95782 5.10212 5.14432 5.16645 5.30964 5.40129 5.45399 5.63404 5.71500 5.83142 5.92664 6.11595 6.36807 6.74156 6.93458 7.01977 7.33581 7.62176 8.88890 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.043756 B = 0.002078 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.761266 B =13472.494044 C =13817.998195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.708 5.708 13 C 0.494 3.506 14 O -0.604 6.604 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.125 3.875 18 N -0.711 5.711 19 C 0.600 3.400 20 O -0.560 6.560 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.234 4.234 24 C 0.009 3.991 25 O -0.173 6.173 26 H 0.065 0.935 27 H 0.012 0.988 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.406 0.594 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.414 0.586 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 -0.090 -25.677 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.357 5.357 13 C 0.282 3.718 14 O -0.487 6.487 15 C -0.165 4.165 16 C -0.143 4.143 17 C 0.002 3.998 18 N -0.361 5.361 19 C 0.387 3.613 20 O -0.441 6.441 21 C -0.165 4.165 22 C -0.146 4.146 23 C -0.253 4.253 24 C -0.060 4.060 25 O -0.069 6.069 26 H 0.083 0.917 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.178 0.822 39 H 0.201 0.799 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.405 0.145 -25.345 25.915 hybrid contribution 0.086 -0.039 0.993 0.998 sum 5.491 0.106 -24.352 24.963 Atomic orbital electron populations 1.21893 0.98403 0.99424 0.99504 1.18318 0.91085 0.91890 0.82275 0.98564 1.21569 1.32455 1.13540 0.90840 0.90788 1.25830 0.94929 0.95652 1.02429 1.70054 1.37013 1.24012 1.24566 0.85330 0.77716 0.79197 0.77994 1.20407 1.21038 1.18347 1.46315 1.65233 1.14339 1.09847 1.21479 0.77312 0.87146 0.85900 1.90634 1.53362 1.18596 1.86098 1.21550 1.05077 0.99489 0.90405 1.21369 1.02541 0.98149 0.92290 1.21436 1.02498 0.91852 0.84046 1.45903 1.65773 1.15349 1.09125 1.16743 0.77229 0.85699 0.81592 1.90853 1.51200 1.18235 1.83817 1.21888 1.13651 0.83620 0.97320 1.22276 0.99243 1.01391 0.91644 1.22235 1.07986 0.91935 1.03146 1.25395 0.98927 1.01305 0.80417 1.84074 1.66571 1.21410 1.34836 0.91670 0.96885 0.94080 0.92596 0.75861 0.86124 0.86320 0.91459 0.91306 0.90326 0.90448 0.74924 0.82215 0.79887 0.73086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.27 13.82 2.56 44.25 0.11 13.94 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.62 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 12 N -0.71 -28.32 5.07 -446.10 -2.26 -30.58 16 13 C 0.49 18.39 7.79 87.66 0.68 19.07 16 14 O -0.60 -28.37 15.64 -3.04 -0.05 -28.42 16 15 C -0.13 -2.87 5.70 29.85 0.17 -2.70 16 16 C -0.11 -2.32 4.62 30.59 0.14 -2.18 16 17 C 0.12 2.40 5.67 86.38 0.49 2.89 16 18 N -0.71 -14.31 5.55 -467.09 -2.59 -16.90 16 19 C 0.60 14.32 7.79 86.44 0.67 14.99 16 20 O -0.56 -16.70 16.86 -4.32 -0.07 -16.77 16 21 C -0.11 -2.31 7.13 24.07 0.17 -2.14 16 22 C -0.12 -2.17 10.62 22.39 0.24 -1.93 16 23 C -0.23 -2.58 10.87 22.07 0.24 -2.34 16 24 C 0.01 0.09 12.08 67.10 0.81 0.90 16 25 O -0.17 -2.86 10.40 -5.07 -0.05 -2.92 16 26 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.41 13.36 8.54 -92.71 -0.79 12.56 16 31 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.07 1.64 8.10 -2.38 -0.02 1.63 16 34 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.41 7.16 8.23 -92.71 -0.76 6.40 16 38 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.25 -0.05 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -75.50 349.52 1.83 -73.67 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.49 Total: 23.53 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.07 Total: 6.99 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.61 Total: -99.96 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.17 Total: -48.11 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -75.50 1.83 -73.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194743330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.278 kcal (2) G-P(sol) polarization free energy of solvation -75.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds