Wall clock time and date at job start Tue Mar 31 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47003 * 2 1 4 4 C 1.53003 * 109.46912 * 239.99706 * 2 1 3 5 5 C 1.50700 * 109.46947 * 65.00541 * 4 2 1 6 6 C 1.38262 * 119.98980 * 89.99854 * 5 4 2 7 7 C 1.38227 * 120.05195 * 180.02562 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.25898 * 7 6 5 9 9 C 1.38439 * 119.97325 * 359.41717 * 8 7 6 10 10 F 1.35105 * 120.02463 * 180.29881 * 9 8 7 11 11 C 1.38177 * 119.98534 * 269.97318 * 5 4 2 12 12 C 1.50696 * 109.46972 * 120.00219 * 2 1 3 13 13 O 1.20826 * 120.00529 * 120.00047 * 12 2 1 14 14 O 1.34231 * 119.99750 * 299.99743 * 12 2 1 15 15 C 1.45199 * 117.00037 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47348 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47254 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47108 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00023 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00300 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 89.99846 * 22 20 18 24 24 H 1.48501 * 109.47109 * 210.00023 * 22 20 18 25 25 H 1.48498 * 109.47034 * 329.99970 * 22 20 18 26 26 H 1.09005 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47155 * 300.00054 * 1 2 3 28 28 H 1.09004 * 109.47169 * 60.00580 * 1 2 3 29 29 H 1.08997 * 109.47540 * 304.99804 * 4 2 1 30 30 H 1.09003 * 109.46699 * 185.00198 * 4 2 1 31 31 H 1.07999 * 119.97792 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.98464 * 179.97438 * 7 6 5 33 33 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 34 34 H 1.08000 * 120.01276 * 359.97438 * 11 5 4 35 35 H 1.08996 * 109.47231 * 300.00106 * 15 14 12 36 36 H 1.09003 * 109.47071 * 59.99946 * 15 14 12 37 37 H 1.09004 * 109.46680 * 300.00104 * 16 15 14 38 38 H 1.09003 * 109.47172 * 59.99893 * 16 15 14 39 39 H 1.08996 * 109.47265 * 299.99955 * 17 16 15 40 40 H 1.09003 * 109.47131 * 59.99852 * 17 16 15 41 41 H 0.96994 * 120.00063 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4819 1.0330 -2.9791 7 6 2.1173 1.7481 -4.1045 8 6 0.9094 1.4917 -4.7256 9 6 0.0701 0.5101 -4.2272 10 9 -1.1081 0.2545 -4.8370 11 6 0.4362 -0.2054 -3.0995 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1196 14 8 1.7080 -0.2518 2.4495 15 6 2.2276 -0.9857 3.5896 16 6 1.7554 -0.3192 4.8834 17 6 2.3034 -1.0922 6.0847 18 6 1.8389 -0.4353 7.3590 19 1 1.2148 0.4451 7.3163 20 6 2.2097 -0.9589 8.5793 21 7 1.8039 -0.3860 9.6915 22 14 3.2885 -2.4822 8.6532 23 1 4.7169 -2.0767 8.6728 24 1 2.9753 -3.2513 9.8843 25 1 3.0308 -3.3295 7.4612 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 3.4236 1.2375 -2.4916 32 1 2.7745 2.5106 -4.4959 33 1 0.6228 2.0537 -5.6022 34 1 -0.2198 -0.9684 -2.7073 35 1 1.8642 -2.0127 3.5569 36 1 3.3171 -0.9846 3.5565 37 1 2.1186 0.7080 4.9164 38 1 0.6659 -0.3207 4.9163 39 1 1.9407 -2.1195 6.0519 40 1 3.3930 -1.0903 6.0516 41 1 2.0645 -0.7546 10.5500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253608057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:01 Heat of formation + Delta-G solvation = -136.271316 kcal Electronic energy + Delta-G solvation = -22219.353293 eV Core-core repulsion = 18591.797719 eV Total energy + Delta-G solvation = -3627.555574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.24557 -40.64142 -39.56641 -36.80919 -35.30759 -34.09006 -31.92830 -31.36046 -30.95295 -27.70453 -27.21331 -24.69601 -23.11916 -22.91696 -21.74996 -20.44252 -19.91078 -17.89639 -17.27166 -16.96696 -16.76657 -16.55175 -16.45693 -16.18135 -15.89722 -14.93330 -14.43511 -14.29995 -13.96179 -13.81794 -13.65750 -13.41372 -12.87588 -12.76045 -12.55238 -12.41206 -12.28949 -12.10615 -11.94246 -11.52404 -11.39901 -11.34232 -11.07329 -10.96739 -10.51208 -10.44191 -10.00427 -9.81784 -9.73987 -9.37002 -9.26619 -9.07311 -8.58329 -6.08499 -4.07647 0.71713 0.77224 2.23112 2.73198 3.17590 3.28489 3.36228 3.39497 3.82393 4.23485 4.32433 4.41453 4.44617 4.60235 4.61206 4.74206 4.83028 4.93602 5.06382 5.24636 5.26479 5.35531 5.43180 5.46227 5.49732 5.54391 5.62899 5.69396 5.77767 5.83862 5.87867 5.92068 6.10201 6.33572 6.36716 6.47180 6.64837 6.78483 7.19092 7.30421 7.70502 7.83582 8.48125 8.95682 9.52934 11.04626 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.039972 B = 0.002202 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.313729 B =12714.754845 C =12873.620938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.111 0.889 4 C -0.069 4.069 5 C -0.049 4.049 6 C -0.125 4.125 7 C -0.088 4.088 8 C -0.159 4.159 9 C 0.099 3.901 10 F -0.140 7.140 11 C -0.148 4.148 12 C 0.462 3.538 13 O -0.513 6.513 14 O -0.353 6.353 15 C 0.065 3.935 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.067 3.933 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 3.088 -30.177 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.129 0.871 4 C -0.107 4.107 5 C -0.049 4.049 6 C -0.144 4.144 7 C -0.106 4.106 8 C -0.178 4.178 9 C 0.080 3.920 10 F -0.119 7.119 11 C -0.167 4.167 12 C 0.304 3.696 13 O -0.402 6.402 14 O -0.270 6.270 15 C -0.008 4.008 16 C -0.139 4.139 17 C -0.048 4.048 18 C -0.560 4.560 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.540 5.540 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.687 2.759 -29.976 30.111 hybrid contribution 0.453 -0.922 0.138 1.036 sum -0.234 1.837 -29.839 29.896 Atomic orbital electron populations 1.21884 0.91825 1.03168 1.03820 1.20968 0.98614 1.00958 0.89155 0.87141 1.20539 1.02792 0.98396 0.88935 1.19649 0.93279 0.95956 0.96015 1.21196 1.00298 0.96096 0.96766 1.21027 0.95485 0.99008 0.95084 1.21174 0.95365 0.98962 1.02250 1.17711 0.82811 0.97817 0.93703 1.91513 1.44751 1.93367 1.82271 1.21109 0.98090 1.01836 0.95647 1.23545 0.77544 0.82944 0.85523 1.90656 1.35870 1.26044 1.87595 1.86500 1.69457 1.55986 1.15008 1.23504 0.98791 0.95587 0.82895 1.21558 1.01587 1.00327 0.90427 1.19522 0.96056 0.95998 0.93240 1.21051 1.32474 1.13761 0.88668 0.90796 1.25022 0.95787 0.97014 0.95637 1.69908 1.45782 1.40729 0.97569 0.86780 0.81111 0.83681 0.77742 1.20207 1.21270 1.18993 0.91928 0.90614 0.90923 0.89570 0.89255 0.85079 0.84882 0.84835 0.84521 0.91553 0.91546 0.91543 0.91512 0.96296 0.96730 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.70 37.16 0.32 -0.94 16 2 C -0.08 -0.73 2.82 -91.77 -0.26 -0.99 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.07 -0.58 4.19 -27.88 -0.12 -0.69 16 5 C -0.05 -0.37 4.71 -104.64 -0.49 -0.86 16 6 C -0.13 -0.83 9.70 -39.58 -0.38 -1.21 16 7 C -0.09 -0.53 10.04 -39.59 -0.40 -0.92 16 8 C -0.16 -1.09 10.03 -39.51 -0.40 -1.48 16 9 C 0.10 0.82 7.30 -39.42 -0.29 0.53 16 10 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 11 C -0.15 -1.15 7.94 -39.51 -0.31 -1.47 16 12 C 0.46 6.30 7.25 36.00 0.26 6.56 16 13 O -0.51 -8.29 15.67 -18.75 -0.29 -8.59 16 14 O -0.35 -5.45 10.12 -39.26 -0.40 -5.85 16 15 C 0.07 1.12 5.47 37.16 0.20 1.32 16 16 C -0.10 -1.99 5.53 -26.73 -0.15 -2.14 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 18 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 19 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 22 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 0.53 6.27 -51.93 -0.33 0.20 16 29 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.14 0.94 8.04 -52.49 -0.42 0.52 16 35 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 36 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -32.02 350.57 -7.97 -39.99 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -6.16 Total: -3.70 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.55 Total: -15.91 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.69 Total: -14.44 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.02 -7.97 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253608057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.282 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds