Wall clock time and date at job start Tue Mar 31 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47003 * 2 1 4 4 C 1.53003 * 109.46912 * 239.99706 * 2 1 3 5 5 C 1.50700 * 109.46947 * 65.00541 * 4 2 1 6 6 C 1.38262 * 119.98980 * 89.99854 * 5 4 2 7 7 C 1.38227 * 120.05195 * 180.02562 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.25898 * 7 6 5 9 9 C 1.38439 * 119.97325 * 359.41717 * 8 7 6 10 10 F 1.35105 * 120.02463 * 180.29881 * 9 8 7 11 11 C 1.38177 * 119.98534 * 269.97318 * 5 4 2 12 12 C 1.50696 * 109.46972 * 120.00219 * 2 1 3 13 13 O 1.20826 * 120.00529 * 120.00047 * 12 2 1 14 14 O 1.34231 * 119.99750 * 299.99743 * 12 2 1 15 15 C 1.45199 * 117.00037 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47348 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47254 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47108 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00023 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00300 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 89.99846 * 22 20 18 24 24 H 1.48501 * 109.47109 * 210.00023 * 22 20 18 25 25 H 1.48498 * 109.47034 * 329.99970 * 22 20 18 26 26 H 1.09005 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47155 * 300.00054 * 1 2 3 28 28 H 1.09004 * 109.47169 * 60.00580 * 1 2 3 29 29 H 1.08997 * 109.47540 * 304.99804 * 4 2 1 30 30 H 1.09003 * 109.46699 * 185.00198 * 4 2 1 31 31 H 1.07999 * 119.97792 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.98464 * 179.97438 * 7 6 5 33 33 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 34 34 H 1.08000 * 120.01276 * 359.97438 * 11 5 4 35 35 H 1.08996 * 109.47231 * 300.00106 * 15 14 12 36 36 H 1.09003 * 109.47071 * 59.99946 * 15 14 12 37 37 H 1.09004 * 109.46680 * 300.00104 * 16 15 14 38 38 H 1.09003 * 109.47172 * 59.99893 * 16 15 14 39 39 H 1.08996 * 109.47265 * 299.99955 * 17 16 15 40 40 H 1.09003 * 109.47131 * 59.99852 * 17 16 15 41 41 H 0.96994 * 120.00063 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4819 1.0330 -2.9791 7 6 2.1173 1.7481 -4.1045 8 6 0.9094 1.4917 -4.7256 9 6 0.0701 0.5101 -4.2272 10 9 -1.1081 0.2545 -4.8370 11 6 0.4362 -0.2054 -3.0995 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1196 14 8 1.7080 -0.2518 2.4495 15 6 2.2276 -0.9857 3.5896 16 6 1.7554 -0.3192 4.8834 17 6 2.3034 -1.0922 6.0847 18 6 1.8389 -0.4353 7.3590 19 1 1.2148 0.4451 7.3163 20 6 2.2097 -0.9589 8.5793 21 7 1.8039 -0.3860 9.6915 22 14 3.2885 -2.4822 8.6532 23 1 4.7169 -2.0767 8.6728 24 1 2.9753 -3.2513 9.8843 25 1 3.0308 -3.3295 7.4612 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 3.4236 1.2375 -2.4916 32 1 2.7745 2.5106 -4.4959 33 1 0.6228 2.0537 -5.6022 34 1 -0.2198 -0.9684 -2.7073 35 1 1.8642 -2.0127 3.5569 36 1 3.3171 -0.9846 3.5565 37 1 2.1186 0.7080 4.9164 38 1 0.6659 -0.3207 4.9163 39 1 1.9407 -2.1195 6.0519 40 1 3.3930 -1.0903 6.0516 41 1 2.0645 -0.7546 10.5500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253608057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:00 Heat of formation + Delta-G solvation = -152.095421 kcal Electronic energy + Delta-G solvation = -22220.039477 eV Core-core repulsion = 18591.797719 eV Total energy + Delta-G solvation = -3628.241759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87835 -41.70894 -40.19122 -37.99708 -36.10251 -35.92144 -33.86879 -32.04330 -31.48105 -29.45985 -27.85203 -25.85855 -24.35367 -23.63142 -22.54333 -22.07489 -20.95846 -19.03562 -18.75114 -18.01770 -17.77671 -17.34871 -17.28406 -17.05305 -16.57323 -16.29724 -15.96542 -15.24937 -14.88025 -14.80632 -14.74246 -14.41400 -14.14386 -13.86255 -13.75480 -13.57735 -13.18666 -13.05105 -12.85137 -12.64467 -12.59961 -12.22328 -12.12819 -12.03789 -11.97732 -11.91166 -11.76270 -11.40734 -11.36029 -11.27058 -10.77996 -9.89453 -9.62376 -8.30607 -6.35668 0.17849 0.25670 1.14863 1.36503 1.38166 1.49817 1.65871 2.35241 2.63300 3.04406 3.25211 3.47213 3.74804 3.78097 3.92074 3.98303 4.01475 4.03562 4.18706 4.25992 4.30686 4.38859 4.41966 4.62576 4.73666 4.74754 4.80713 4.83203 4.94562 4.95798 5.09601 5.14229 5.18764 5.24340 5.35168 5.40015 5.48341 5.53319 5.56387 5.62422 5.96154 6.25274 6.68311 6.73176 7.28816 8.85873 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.039972 B = 0.002202 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.313729 B =12714.754845 C =12873.620938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 H 0.130 0.870 4 C -0.062 4.062 5 C -0.054 4.054 6 C -0.126 4.126 7 C -0.086 4.086 8 C -0.160 4.160 9 C 0.076 3.924 10 F -0.152 7.152 11 C -0.154 4.154 12 C 0.461 3.539 13 O -0.538 6.538 14 O -0.358 6.358 15 C 0.074 3.926 16 C -0.092 4.092 17 C -0.010 4.010 18 C -0.534 4.534 19 H 0.035 0.965 20 C 0.004 3.996 21 N -0.949 5.949 22 Si 0.950 3.050 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.246 1.246 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 2.721 -32.157 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 H 0.148 0.852 4 C -0.100 4.100 5 C -0.055 4.055 6 C -0.144 4.144 7 C -0.104 4.104 8 C -0.179 4.179 9 C 0.057 3.943 10 F -0.131 7.131 11 C -0.173 4.173 12 C 0.306 3.694 13 O -0.428 6.428 14 O -0.274 6.274 15 C 0.001 3.999 16 C -0.130 4.130 17 C -0.047 4.047 18 C -0.572 4.572 19 H 0.054 0.946 20 C -0.193 4.193 21 N -0.590 5.590 22 Si 0.773 3.227 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.170 1.170 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.588 2.402 -31.986 32.082 hybrid contribution 0.007 -0.707 0.708 1.000 sum 0.595 1.695 -31.278 31.330 Atomic orbital electron populations 1.21879 0.91088 1.03260 1.04188 1.21090 0.99053 1.01445 0.87272 0.85242 1.20451 1.02590 0.98149 0.88770 1.19561 0.93495 0.96522 0.95885 1.21466 1.00642 0.95442 0.96850 1.21343 0.95334 0.99153 0.94548 1.21444 0.95389 0.98421 1.02619 1.17963 0.82978 0.98971 0.94374 1.91479 1.45500 1.93588 1.82535 1.21179 0.98398 1.01972 0.95721 1.24388 0.76749 0.82675 0.85617 1.90646 1.37139 1.27314 1.87726 1.86497 1.69608 1.55920 1.15412 1.23167 0.98930 0.95295 0.82559 1.21315 1.01152 0.99850 0.90687 1.19452 0.96596 0.96187 0.92472 1.21401 1.31757 1.12867 0.91125 0.94642 1.26020 0.97456 1.00736 0.95107 1.70061 1.47646 1.42872 0.98392 0.85655 0.79191 0.79357 0.78450 1.19022 1.20933 1.16971 0.92057 0.91236 0.89508 0.90175 0.89359 0.83461 0.82262 0.83406 0.84304 0.91335 0.91062 0.91820 0.91937 0.95702 0.95715 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.70 71.98 0.63 -1.64 16 2 C -0.07 -1.18 2.82 -11.54 -0.03 -1.21 16 3 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.06 -0.93 4.19 29.85 0.13 -0.81 16 5 C -0.05 -0.71 4.71 -19.87 -0.09 -0.81 16 6 C -0.13 -1.32 9.70 22.27 0.22 -1.11 16 7 C -0.09 -0.78 10.04 22.26 0.22 -0.56 16 8 C -0.16 -1.87 10.03 22.31 0.22 -1.65 16 9 C 0.08 1.18 7.30 22.38 0.16 1.34 16 10 F -0.15 -2.80 17.27 44.97 0.78 -2.02 16 11 C -0.15 -2.22 7.94 22.31 0.18 -2.04 16 12 C 0.46 11.89 7.25 71.23 0.52 12.40 16 13 O -0.54 -16.69 15.67 21.96 0.34 -16.34 16 14 O -0.36 -10.55 10.12 -51.42 -0.52 -11.07 16 15 C 0.07 2.42 5.47 71.98 0.39 2.81 16 16 C -0.09 -3.56 5.53 30.59 0.17 -3.39 16 17 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 18 C -0.53 -30.64 9.66 25.60 0.25 -30.40 16 19 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 20 C 0.00 0.22 5.47 84.65 0.46 0.68 16 21 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 22 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 25 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 28 H 0.09 1.11 6.27 -2.39 -0.01 1.10 16 29 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 30 H 0.09 1.35 7.90 -2.39 -0.02 1.33 16 31 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.14 1.82 8.04 -2.91 -0.02 1.80 16 35 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 36 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 37 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 40 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -69.28 350.57 7.28 -62.01 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.95 Total: 7.44 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 3.54 Total: -26.69 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.18 Total: -27.41 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -69.28 7.28 -62.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253608057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.090 kcal (2) G-P(sol) polarization free energy of solvation -69.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds