Wall clock time and date at job start Tue Mar 31 2020 07:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00056 * 2 1 4 4 H 1.08997 * 109.47012 * 30.00019 * 3 2 1 5 5 C 1.52997 * 109.47290 * 270.00126 * 3 2 1 6 6 C 1.50703 * 109.47126 * 150.00215 * 3 2 1 7 7 O 1.21283 * 119.99854 * 5.00074 * 6 3 2 8 8 N 1.34776 * 119.99773 * 185.00014 * 6 3 2 9 9 C 1.39584 * 119.99545 * 179.97438 * 8 6 3 10 10 N 1.32271 * 119.72915 * 0.02562 * 9 8 6 11 11 C 1.31955 * 121.69162 * 179.70903 * 10 9 8 12 12 C 1.38088 * 120.95362 * 0.53593 * 11 10 9 13 13 C 1.38783 * 119.35398 * 359.47549 * 12 11 10 14 14 C 1.38801 * 118.44449 * 0.25126 * 13 12 11 15 15 O 1.35976 * 120.49468 * 179.97438 * 14 13 12 16 16 C 1.42903 * 117.00045 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47268 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99542 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00130 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46893 * 359.97438 * 22 20 18 24 24 H 1.48489 * 109.47051 * 120.00037 * 22 20 18 25 25 H 1.48502 * 109.47109 * 240.00053 * 22 20 18 26 26 H 1.09003 * 109.47584 * 59.99622 * 1 2 3 27 27 H 1.08999 * 109.47232 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46810 * 300.00100 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00235 * 5 3 2 30 30 H 1.09004 * 109.47181 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.47340 * 299.99863 * 5 3 2 32 32 H 0.96998 * 120.00382 * 0.02562 * 8 6 3 33 33 H 1.08003 * 119.52523 * 180.26451 * 11 10 9 34 34 H 1.08002 * 120.32577 * 179.75677 * 12 11 10 35 35 H 1.07999 * 120.77239 * 180.27565 * 13 12 11 36 36 H 1.08997 * 109.46925 * 300.00077 * 16 15 14 37 37 H 1.08998 * 109.47137 * 59.99668 * 16 15 14 38 38 H 1.08998 * 109.47065 * 300.00411 * 17 16 15 39 39 H 1.09006 * 109.46838 * 60.00226 * 17 16 15 40 40 H 0.97009 * 119.99926 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2044 1.0913 8 7 4.0254 2.4040 0.9223 9 6 5.2556 2.3655 1.5808 10 7 5.7424 1.2071 1.9939 11 6 6.9038 1.1252 2.6151 12 6 7.6549 2.2558 2.8686 13 6 7.1834 3.4932 2.4530 14 6 5.9615 3.5487 1.7971 15 8 5.4598 4.7391 1.3724 16 6 6.2450 5.9042 1.6333 17 6 5.5244 7.1379 1.0860 18 6 6.3521 8.3667 1.3617 19 1 7.2974 8.2767 1.8763 20 6 5.9022 9.6059 0.9581 21 7 4.7504 9.7155 0.3328 22 14 6.9279 11.1291 1.3005 23 1 8.1709 10.7388 2.0133 24 1 7.2789 11.7882 0.0170 25 1 6.1491 12.0710 2.1440 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.2568 1.8016 -1.9563 30 1 2.6614 2.7670 -1.4424 31 1 2.8829 1.0775 -1.9564 32 1 3.6645 3.2513 0.6180 33 1 7.2701 0.1604 2.9337 34 1 8.6023 2.1775 3.3813 35 1 7.7542 4.3917 2.6354 36 1 6.3872 6.0132 2.7085 37 1 7.2153 5.8049 1.1468 38 1 5.3825 7.0287 0.0108 39 1 4.5539 7.2374 1.5723 40 1 4.4340 10.5874 0.0484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263808128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:13 Heat of formation + Delta-G solvation = -76.159985 kcal Electronic energy + Delta-G solvation = -23143.909685 eV Core-core repulsion = 19538.880696 eV Total energy + Delta-G solvation = -3605.028989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93222 -39.58784 -37.96885 -37.48683 -34.81545 -33.49774 -32.15156 -31.46309 -30.44887 -28.98353 -27.02692 -25.47253 -24.79862 -23.22697 -22.66422 -21.05443 -20.21505 -18.53285 -17.65774 -17.47350 -16.57971 -16.20872 -15.98150 -15.84704 -15.55337 -14.87782 -14.75331 -14.63023 -14.57089 -13.96057 -13.64182 -13.40390 -12.90596 -12.84527 -12.57600 -12.43026 -12.05653 -12.03522 -11.93268 -11.39268 -11.06898 -11.03053 -10.71490 -10.69459 -10.27302 -10.07272 -9.92663 -9.77495 -9.41238 -9.22946 -8.97350 -8.54714 -7.67926 -6.20311 -4.25080 1.19650 1.44118 2.59058 2.68054 3.20252 3.27561 3.30490 3.51066 3.68769 3.99828 4.31809 4.33423 4.64222 4.74151 4.79573 4.94432 5.05554 5.09405 5.13187 5.16877 5.26248 5.35031 5.44365 5.46035 5.48355 5.84337 5.88105 5.89154 6.04692 6.17322 6.33164 6.51871 6.59046 6.80503 7.24185 7.32578 7.50130 7.62243 7.83154 8.06163 8.12238 8.34134 8.80315 9.40083 10.91134 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.003518 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.264777 B = 7956.685918 C = 9616.599974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.072 3.928 4 H 0.090 0.910 5 C -0.173 4.173 6 C 0.504 3.496 7 O -0.459 6.459 8 N -0.650 5.650 9 C 0.329 3.671 10 N -0.445 5.445 11 C 0.076 3.924 12 C -0.159 4.159 13 C -0.148 4.148 14 C 0.068 3.932 15 O -0.316 6.316 16 C 0.066 3.934 17 C 0.026 3.974 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.424 0.576 33 H 0.157 0.843 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -14.988 0.446 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.011 3.989 4 H 0.108 0.892 5 C -0.230 4.230 6 C 0.288 3.712 7 O -0.326 6.326 8 N -0.300 5.300 9 C 0.097 3.903 10 N -0.160 5.160 11 C -0.081 4.081 12 C -0.181 4.181 13 C -0.174 4.174 14 C 0.016 3.984 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.011 4.011 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.262 0.738 33 H 0.174 0.826 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.084 -16.550 0.347 17.050 hybrid contribution 0.834 2.495 0.270 2.645 sum -3.250 -14.055 0.617 14.439 Atomic orbital electron populations 1.22890 0.80532 1.03206 1.00180 1.88037 1.19715 1.25066 1.94949 1.21904 0.93131 0.86975 0.96929 0.89225 1.22259 1.03622 1.02453 0.94707 1.20544 0.86346 0.83981 0.80358 1.90805 1.67391 1.28712 1.45741 1.43383 1.18237 1.11436 1.56930 1.17774 0.87749 0.87503 0.97300 1.67622 1.13652 1.23504 1.11180 1.22422 0.89917 0.98736 0.97019 1.21902 1.01577 0.92548 1.02043 1.21614 0.95487 0.99820 1.00505 1.19578 0.93892 0.86706 0.98207 1.86093 1.48535 1.12955 1.75297 1.23399 0.94786 0.82683 0.99935 1.19131 0.96475 0.88078 0.97387 1.20984 1.05810 0.91073 1.38722 0.92287 1.24978 0.95122 0.99208 0.94797 1.69972 1.19481 1.24489 1.38728 0.86430 0.80228 0.82609 0.78131 1.19620 1.20794 1.20802 0.93707 0.89158 0.93746 0.90971 0.90427 0.90975 0.73847 0.82573 0.84746 0.83697 0.92926 0.92919 0.95337 0.95355 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.53 9.89 -55.09 -0.54 -5.08 16 3 C 0.07 0.82 3.13 -27.88 -0.09 0.73 16 4 H 0.09 0.79 7.79 -51.93 -0.40 0.39 16 5 C -0.17 -1.62 9.48 37.16 0.35 -1.27 16 6 C 0.50 7.62 7.14 -10.98 -0.08 7.54 16 7 O -0.46 -8.78 14.76 -14.31 -0.21 -8.99 16 8 N -0.65 -9.57 5.35 -11.29 -0.06 -9.63 16 9 C 0.33 5.51 7.45 -154.43 -1.15 4.36 16 10 N -0.44 -7.61 7.88 -12.22 -0.10 -7.71 16 11 C 0.08 1.04 11.17 -17.55 -0.20 0.85 16 12 C -0.16 -1.99 10.10 -39.44 -0.40 -2.39 16 13 C -0.15 -2.14 9.14 -39.17 -0.36 -2.49 16 14 C 0.07 1.12 6.72 -38.92 -0.26 0.86 16 15 O -0.32 -5.71 9.39 -19.66 -0.18 -5.90 16 16 C 0.07 1.28 4.70 37.16 0.17 1.45 16 17 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 18 C -0.53 -13.93 9.11 -34.44 -0.31 -14.24 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.32 8.09 -51.92 -0.42 -0.10 16 29 H 0.07 0.54 7.87 -51.93 -0.41 0.14 16 30 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.42 5.38 7.83 -40.82 -0.32 5.06 16 33 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.93 6.44 -52.49 -0.34 1.60 16 36 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 37 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -33.36 345.10 -7.24 -40.60 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.59 Total: 1.78 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.47 Total: -1.22 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.58 Total: -41.84 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.94 Total: -19.97 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.36 -7.24 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263808128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.565 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds