Wall clock time and date at job start Tue Mar 31 2020 07:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00056 * 2 1 4 4 H 1.08997 * 109.47012 * 30.00019 * 3 2 1 5 5 C 1.52997 * 109.47290 * 270.00126 * 3 2 1 6 6 C 1.50703 * 109.47126 * 150.00215 * 3 2 1 7 7 O 1.21283 * 119.99854 * 5.00074 * 6 3 2 8 8 N 1.34776 * 119.99773 * 185.00014 * 6 3 2 9 9 C 1.39584 * 119.99545 * 179.97438 * 8 6 3 10 10 N 1.32271 * 119.72915 * 0.02562 * 9 8 6 11 11 C 1.31955 * 121.69162 * 179.70903 * 10 9 8 12 12 C 1.38088 * 120.95362 * 0.53593 * 11 10 9 13 13 C 1.38783 * 119.35398 * 359.47549 * 12 11 10 14 14 C 1.38801 * 118.44449 * 0.25126 * 13 12 11 15 15 O 1.35976 * 120.49468 * 179.97438 * 14 13 12 16 16 C 1.42903 * 117.00045 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47268 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99542 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00130 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46893 * 359.97438 * 22 20 18 24 24 H 1.48489 * 109.47051 * 120.00037 * 22 20 18 25 25 H 1.48502 * 109.47109 * 240.00053 * 22 20 18 26 26 H 1.09003 * 109.47584 * 59.99622 * 1 2 3 27 27 H 1.08999 * 109.47232 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46810 * 300.00100 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00235 * 5 3 2 30 30 H 1.09004 * 109.47181 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.47340 * 299.99863 * 5 3 2 32 32 H 0.96998 * 120.00382 * 0.02562 * 8 6 3 33 33 H 1.08003 * 119.52523 * 180.26451 * 11 10 9 34 34 H 1.08002 * 120.32577 * 179.75677 * 12 11 10 35 35 H 1.07999 * 120.77239 * 180.27565 * 13 12 11 36 36 H 1.08997 * 109.46925 * 300.00077 * 16 15 14 37 37 H 1.08998 * 109.47137 * 59.99668 * 16 15 14 38 38 H 1.08998 * 109.47065 * 300.00411 * 17 16 15 39 39 H 1.09006 * 109.46838 * 60.00226 * 17 16 15 40 40 H 0.97009 * 119.99926 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2044 1.0913 8 7 4.0254 2.4040 0.9223 9 6 5.2556 2.3655 1.5808 10 7 5.7424 1.2071 1.9939 11 6 6.9038 1.1252 2.6151 12 6 7.6549 2.2558 2.8686 13 6 7.1834 3.4932 2.4530 14 6 5.9615 3.5487 1.7971 15 8 5.4598 4.7391 1.3724 16 6 6.2450 5.9042 1.6333 17 6 5.5244 7.1379 1.0860 18 6 6.3521 8.3667 1.3617 19 1 7.2974 8.2767 1.8763 20 6 5.9022 9.6059 0.9581 21 7 4.7504 9.7155 0.3328 22 14 6.9279 11.1291 1.3005 23 1 8.1709 10.7388 2.0133 24 1 7.2789 11.7882 0.0170 25 1 6.1491 12.0710 2.1440 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.2568 1.8016 -1.9563 30 1 2.6614 2.7670 -1.4424 31 1 2.8829 1.0775 -1.9564 32 1 3.6645 3.2513 0.6180 33 1 7.2701 0.1604 2.9337 34 1 8.6023 2.1775 3.3813 35 1 7.7542 4.3917 2.6354 36 1 6.3872 6.0132 2.7085 37 1 7.2153 5.8049 1.1468 38 1 5.3825 7.0287 0.0108 39 1 4.5539 7.2374 1.5723 40 1 4.4340 10.5874 0.0484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263808128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:12 Heat of formation + Delta-G solvation = -97.763195 kcal Electronic energy + Delta-G solvation = -23144.846471 eV Core-core repulsion = 19538.880696 eV Total energy + Delta-G solvation = -3605.965775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10571 -40.71829 -39.21147 -38.50783 -36.02874 -35.43911 -33.13543 -32.76595 -31.98336 -30.21697 -27.71102 -27.16517 -25.88734 -24.56789 -23.77191 -22.66582 -21.36410 -19.74678 -19.01536 -18.54249 -18.05520 -17.48265 -17.19460 -17.14775 -16.60515 -16.47046 -15.91252 -15.80666 -15.66428 -15.19050 -14.79082 -14.41456 -14.32718 -14.13506 -13.72480 -13.58033 -13.38284 -13.27660 -12.81451 -12.77978 -12.76509 -12.43246 -12.16598 -11.89899 -11.71209 -11.61625 -11.40332 -11.28336 -10.79046 -10.60452 -10.42411 -10.12903 -8.88441 -8.24884 -6.36875 0.06522 0.28015 1.42949 1.43754 1.54334 1.56152 1.58121 2.10565 2.44904 2.83622 2.85699 3.10747 3.33806 3.63008 3.84777 3.85515 3.96138 4.03746 4.13466 4.30892 4.34427 4.45656 4.46629 4.54395 4.62927 4.75458 4.76126 4.85427 4.95359 5.12163 5.14595 5.22918 5.32293 5.52248 5.52373 5.74135 5.98105 6.09373 6.19882 6.33489 6.78113 6.90747 7.22216 7.33141 8.87809 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.003518 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.264777 B = 7956.685918 C = 9616.599974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.077 3.923 4 H 0.116 0.884 5 C -0.167 4.167 6 C 0.500 3.500 7 O -0.507 6.507 8 N -0.646 5.646 9 C 0.309 3.691 10 N -0.477 5.477 11 C 0.072 3.928 12 C -0.143 4.143 13 C -0.148 4.148 14 C 0.045 3.955 15 O -0.327 6.327 16 C 0.083 3.917 17 C 0.030 3.970 18 C -0.543 4.543 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.258 1.258 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.430 0.570 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -14.779 1.203 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.015 3.985 4 H 0.134 0.866 5 C -0.225 4.225 6 C 0.286 3.714 7 O -0.378 6.378 8 N -0.296 5.296 9 C 0.077 3.923 10 N -0.193 5.193 11 C -0.084 4.084 12 C -0.163 4.163 13 C -0.175 4.175 14 C -0.006 4.006 15 O -0.241 6.241 16 C 0.009 3.991 17 C -0.007 4.007 18 C -0.581 4.581 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.269 0.731 33 H 0.202 0.798 34 H 0.194 0.806 35 H 0.176 0.824 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.874 -16.336 1.100 16.623 hybrid contribution 0.467 2.309 0.072 2.357 sum -2.407 -14.026 1.172 14.280 Atomic orbital electron populations 1.23124 0.78395 1.04367 1.01549 1.87996 1.22120 1.25827 1.95160 1.21978 0.91401 0.87360 0.97720 0.86608 1.22245 1.04667 1.02152 0.93425 1.21330 0.87308 0.83228 0.79508 1.90762 1.68852 1.30214 1.47953 1.43451 1.17920 1.11793 1.56484 1.17992 0.88544 0.87639 0.98095 1.67670 1.15336 1.23898 1.12366 1.23055 0.89008 1.00646 0.95741 1.22291 1.02509 0.91010 1.00519 1.21923 0.94639 1.01303 0.99614 1.19706 0.95205 0.85745 0.99930 1.86022 1.48682 1.13243 1.76112 1.22971 0.94286 0.81629 1.00248 1.18949 0.95730 0.90349 0.95717 1.21428 1.06335 0.91960 1.38395 0.91178 1.25930 0.96250 1.02676 0.94550 1.70100 1.21293 1.25378 1.39960 0.85334 0.78893 0.78408 0.78030 1.18213 1.20506 1.20520 0.91751 0.88242 0.92886 0.88569 0.89841 0.92463 0.73104 0.79786 0.80586 0.82367 0.91778 0.91776 0.97858 0.97890 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.39 -9.79 9.89 -129.99 -1.29 -11.08 16 3 C 0.08 1.71 3.13 29.85 0.09 1.80 16 4 H 0.12 1.92 7.79 -2.39 -0.02 1.90 16 5 C -0.17 -3.03 9.48 71.98 0.68 -2.35 16 6 C 0.50 15.51 7.14 87.66 0.63 16.14 16 7 O -0.51 -20.06 14.76 15.95 0.24 -19.82 16 8 N -0.65 -19.50 5.35 -308.02 -1.65 -21.15 16 9 C 0.31 10.42 7.45 132.98 0.99 11.41 16 10 N -0.48 -16.27 7.88 -192.58 -1.52 -17.79 16 11 C 0.07 1.86 11.17 84.64 0.95 2.80 16 12 C -0.14 -3.12 10.10 22.36 0.23 -2.90 16 13 C -0.15 -3.98 9.14 22.53 0.21 -3.78 16 14 C 0.04 1.46 6.72 22.70 0.15 1.62 16 15 O -0.33 -11.88 9.39 -93.28 -0.88 -12.75 16 16 C 0.08 3.17 4.70 71.98 0.34 3.51 16 17 C 0.03 1.47 5.34 29.85 0.16 1.63 16 18 C -0.54 -28.57 9.11 25.60 0.23 -28.34 16 19 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -53.47 13.29 21.45 0.28 -53.19 16 22 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 0.70 8.09 -2.38 -0.02 0.68 16 29 H 0.10 1.27 7.87 -2.39 -0.02 1.25 16 30 H 0.08 1.40 7.92 -2.38 -0.02 1.38 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.43 11.27 7.83 -92.71 -0.73 10.54 16 33 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.16 3.78 6.44 -2.91 -0.02 3.76 16 36 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 37 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -73.88 345.10 3.89 -69.99 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.33 Total: 18.45 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.34 Total: 3.82 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -2.88 Total: -92.13 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.92 Total: -43.66 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -73.88 3.89 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263808128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.772 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds