Wall clock time and date at job start Tue Mar 31 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47144 * 2 1 4 4 C 1.52995 * 109.46836 * 239.99686 * 2 1 3 5 5 O 1.42897 * 109.47354 * 65.00514 * 4 2 1 6 6 C 1.53005 * 109.47071 * 119.99464 * 2 1 3 7 7 N 1.46498 * 109.47252 * 295.00038 * 6 2 1 8 8 C 1.34776 * 119.99899 * 179.97438 * 7 6 2 9 9 O 1.21588 * 119.99828 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00340 * 179.97438 * 8 7 6 11 11 C 1.39942 * 120.00299 * 175.49811 * 10 8 7 12 12 C 1.38961 * 120.03425 * 214.85535 * 11 10 8 13 13 C 1.38159 * 120.06571 * 179.74479 * 12 11 10 14 14 C 1.38164 * 120.13545 * 0.55024 * 13 12 11 15 15 C 1.38904 * 120.07133 * 359.70511 * 14 13 12 16 16 O 1.35752 * 120.03263 * 179.97438 * 15 14 13 17 17 C 1.34835 * 116.99912 * 5.36319 * 16 15 14 18 18 H 1.07992 * 120.00096 * 354.96085 * 17 16 15 19 19 C 1.38652 * 119.99710 * 174.96349 * 17 16 15 20 20 N 1.31560 * 119.99856 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00254 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47519 * 89.99848 * 21 19 17 23 23 H 1.48508 * 109.47383 * 209.99711 * 21 19 17 24 24 H 1.48497 * 109.47207 * 329.99469 * 21 19 17 25 25 C 1.38702 * 120.03665 * 35.12699 * 11 10 8 26 26 H 1.08998 * 109.47641 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47462 * 300.00071 * 1 2 3 28 28 H 1.08996 * 109.47509 * 60.00295 * 1 2 3 29 29 H 1.09011 * 109.46725 * 184.99878 * 4 2 1 30 30 H 1.08994 * 109.47235 * 304.99470 * 4 2 1 31 31 H 0.96692 * 114.00462 * 180.02562 * 5 4 2 32 32 H 1.09008 * 109.46538 * 55.00122 * 6 2 1 33 33 H 1.08994 * 109.46899 * 174.99684 * 6 2 1 34 34 H 0.96996 * 120.00334 * 0.02562 * 7 6 2 35 35 H 0.96997 * 119.99526 * 355.49948 * 10 8 7 36 36 H 1.08002 * 119.96421 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.92641 * 180.27080 * 13 12 11 38 38 H 1.08008 * 119.96195 * 179.72258 * 14 13 12 39 39 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06688 * 359.96231 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4130 6 6 2.0400 -0.7212 1.2494 7 7 1.6524 0.0355 2.4424 8 6 1.9956 -0.4134 3.6660 9 8 2.6272 -1.4461 3.7796 10 7 1.6395 0.2830 4.7637 11 6 1.9128 -0.2297 6.0368 12 6 1.0261 -0.0038 7.0826 13 6 1.2927 -0.5141 8.3385 14 6 2.4465 -1.2406 8.5615 15 6 3.3394 -1.4654 7.5215 16 8 4.4731 -2.1789 7.7415 17 6 4.6193 -2.7351 8.9611 18 1 3.8937 -2.5361 9.7358 19 6 5.7012 -3.5625 9.2204 20 7 5.8441 -4.1049 10.4105 21 14 6.9567 -3.9061 7.8806 22 1 8.0370 -2.8891 7.9419 23 1 7.5376 -5.2580 8.0814 24 1 6.2936 -3.8445 6.5534 25 6 3.0717 -0.9591 6.2574 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 1.9524 -0.3834 -3.2440 32 1 1.6053 -1.7198 1.2953 33 1 3.1262 -0.7994 1.2057 34 1 1.1483 0.8592 2.3518 35 1 1.1938 1.1395 4.6711 36 1 0.1259 0.5681 6.9126 37 1 0.5998 -0.3409 9.1487 38 1 2.6543 -1.6345 9.5455 39 1 6.6012 -4.6835 10.5920 40 1 3.7643 -1.1328 5.4471 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264213622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:14 Heat of formation + Delta-G solvation = -79.125154 kcal Electronic energy + Delta-G solvation = -22788.663219 eV Core-core repulsion = 19183.505650 eV Total energy + Delta-G solvation = -3605.157569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44204 -38.94796 -38.08398 -36.79580 -35.61089 -34.12627 -32.69999 -32.31119 -29.58076 -28.58410 -27.14964 -25.66854 -25.10286 -22.48637 -21.32936 -20.92473 -20.50244 -18.47313 -18.13716 -17.76130 -17.29247 -16.25619 -15.91977 -15.36167 -15.14871 -15.02292 -14.56984 -14.39102 -14.02091 -13.94499 -13.70859 -13.50230 -13.06112 -12.87696 -12.76511 -12.32134 -12.23988 -11.76506 -11.53814 -11.46325 -11.17820 -11.12564 -10.94342 -10.80791 -10.41218 -10.22383 -9.94678 -9.69690 -9.28635 -9.18154 -8.80762 -7.73348 -7.25985 -6.35622 -4.01940 2.04260 2.28470 2.58472 3.26420 3.31438 3.31959 3.50650 3.75387 4.17307 4.31727 4.40816 4.48651 4.56816 4.71679 4.96327 5.02388 5.12703 5.17752 5.18492 5.40758 5.51223 5.55817 5.60597 5.76832 5.81604 5.90949 6.10903 6.16534 6.26223 6.35662 6.46107 6.73894 6.97726 7.13743 7.17431 7.20026 7.38497 7.65336 7.86820 7.98588 8.09528 8.62491 9.00217 9.64106 10.71896 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003214 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.571317 B = 8710.545410 C =10080.126087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.083 3.917 5 O -0.573 6.573 6 C 0.144 3.856 7 N -0.744 5.744 8 C 0.699 3.301 9 O -0.562 6.562 10 N -0.681 5.681 11 C 0.191 3.809 12 C -0.228 4.228 13 C -0.060 4.060 14 C -0.234 4.234 15 C 0.173 3.827 16 O -0.214 6.214 17 C -0.387 4.387 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.881 5.881 21 Si 0.903 3.097 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.257 1.257 25 C -0.186 4.186 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.381 0.619 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.395 0.605 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.664 10.358 -20.601 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.004 3.996 5 O -0.379 6.379 6 C 0.020 3.980 7 N -0.402 5.402 8 C 0.399 3.601 9 O -0.437 6.437 10 N -0.329 5.329 11 C 0.097 3.903 12 C -0.250 4.250 13 C -0.079 4.079 14 C -0.253 4.253 15 C 0.120 3.880 16 O -0.119 6.119 17 C -0.463 4.463 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.519 5.519 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.181 1.181 25 C -0.208 4.208 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.228 0.772 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.229 0.771 35 H 0.237 0.763 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.005 9.561 -20.106 24.408 hybrid contribution 0.283 0.192 -0.783 0.854 sum -9.722 9.753 -20.889 25.020 Atomic orbital electron populations 1.21792 0.93985 1.02329 1.02057 1.21321 0.97359 1.00896 0.92697 0.89730 1.22064 0.98359 0.94108 0.85037 1.86435 1.81642 1.53357 1.16427 1.21090 1.00210 0.94958 0.81790 1.45012 1.61788 1.28890 1.04471 1.15939 0.80279 0.83578 0.80272 1.91012 1.43239 1.24405 1.85052 1.42445 1.63366 1.23362 1.03700 1.16924 0.93417 0.97557 0.82399 1.20315 1.00380 1.10730 0.93547 1.20539 0.96061 0.95720 0.95570 1.21295 0.96893 1.06625 1.00526 1.18872 0.85999 0.90722 0.92379 1.83586 1.33748 1.59116 1.35464 1.20787 1.12086 1.27280 0.86154 0.87535 1.24449 0.97585 0.94848 0.97050 1.69651 1.30793 1.30972 1.20492 0.86210 0.80791 0.77530 0.82664 1.19911 1.20835 1.18087 1.20193 0.98403 1.06366 0.95828 0.92471 0.92636 0.91692 0.93109 0.93081 0.77164 0.91152 0.91233 0.77092 0.76349 0.87251 0.86759 0.84859 0.91120 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.96 37.16 0.33 -0.66 16 2 C -0.10 -0.74 2.66 -90.62 -0.24 -0.98 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.08 0.53 6.43 37.16 0.24 0.77 16 5 O -0.57 -3.89 13.19 -35.23 -0.46 -4.36 16 6 C 0.14 1.36 5.06 -4.04 -0.02 1.34 16 7 N -0.74 -7.57 5.29 -65.22 -0.34 -7.91 16 8 C 0.70 10.56 8.41 -86.92 -0.73 9.83 16 9 O -0.56 -11.40 13.78 5.29 0.07 -11.32 16 10 N -0.68 -9.48 5.34 -14.24 -0.08 -9.56 16 11 C 0.19 3.47 6.30 -83.72 -0.53 2.94 16 12 C -0.23 -3.80 9.96 -39.34 -0.39 -4.20 16 13 C -0.06 -1.09 10.03 -39.64 -0.40 -1.48 16 14 C -0.23 -5.17 9.17 -39.36 -0.36 -5.53 16 15 C 0.17 4.25 6.64 -39.14 -0.26 3.99 16 16 O -0.21 -5.98 8.58 0.03 0.00 -5.98 16 17 C -0.39 -11.27 9.95 30.89 0.31 -10.97 16 18 H 0.11 3.12 5.43 -52.49 -0.29 2.84 16 19 C 0.06 1.84 5.49 -17.52 -0.10 1.75 16 20 N -0.88 -26.01 13.96 55.48 0.77 -25.24 16 21 Si 0.90 22.62 28.62 -169.99 -4.86 17.76 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.19 -4.15 8.64 -39.21 -0.34 -4.49 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.34 7.18 -51.93 -0.37 -0.03 16 28 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 29 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.38 0.97 9.12 45.56 0.42 1.38 16 32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 2.74 7.67 -40.82 -0.31 2.43 16 35 H 0.40 3.83 8.84 -40.82 -0.36 3.47 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.13 3.06 5.63 -52.48 -0.30 2.77 16 39 H 0.28 7.60 8.31 -40.82 -0.34 7.27 16 40 H 0.14 3.20 6.22 -52.48 -0.33 2.87 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -35.45 338.98 -6.74 -42.19 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.46 Total: 7.01 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.49 Total: -7.69 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.35 Total: -42.71 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.39 Total: -21.66 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.86 Total: 17.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.45 -6.74 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264213622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.938 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds